Soil MIcrobial responses to land use and climatic changes in the Light of Evolution

Project Information

SMILE

Grant agreement ID: 101001608

DOI

10.3030/101001608

EC signature date 17 December 2020

Start date 1 May 2021

End date 30 April 2026

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost

€ 1 688 250,00

EU contribution

€ 1 688 250,00

Coordinated by

STOCKHOLMS UNIVERSITET
Sweden

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Peer reviewed articles (39)

Convergence in simulating global soil organic carbon by structurally different models after data assimilation

Author(s): Feng Tao, Benjamin Z. Houlton, Yuanyuan Huang, Ying‐Ping Wang, Stefano Manzoni, Bernhard Ahrens, Umakant Mishra, Lifen Jiang, Xiaomeng Huang, Yiqi Luo
Published in: Global Change Biology, Issue 30, 2024, ISSN 1354-1013
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/gcb.17297

Priorities, opportunities, and challenges for integrating microorganisms into Earth system models for climate change prediction

Author(s): Lennon J., Abramaoff R., Allison S., Burckhardt R., DeAngelis K., Dunne J., Frey S., Friedlingstein P., Hawkes C., Hungate B., Khurana S., Kivlin S., Levine N., Manzoni Stefano, Martiny A., Martiny J., Nguyen N., Rawat M., Talmy D., Todd-Brown K., Vogt M., Wieder W., and E. Zakem
Published in: mBio, 2024, ISSN 2150-7511
Publisher: American Society for Microbiology
DOI: 10.1128/mbio.00455-24

Effects of compost amendments and experimental drought on grassland soil microbial communities

Author(s): Daniela Guasconi, Gustaf Hugelius, Karina E Clemmensen, Sara A O Cousins, Jaanis Juhanson, Stefano Manzoni, Nina Roth, Petra Fransson
Published in: FEMS Microbiology Letters, Issue 372, 2025, ISSN 1574-6968
Publisher: Oxford University Press (OUP)
DOI: 10.1093/femsle/fnaf108

Mechanisms of soil organic carbon and nitrogen stabilization in mineral associated organic matter – Insights from modelling in phase space

Author(s): Stefano Manzoni, Francesca Cotrufo
Published in: Biogeosciences, 2024, ISSN 1726-4189
Publisher: Copernicus GmbH
DOI: 10.5194/egusphere-2024-1092

Microbial evolution—An under-appreciated driver of soil carbon cycling

Author(s): Elsa Abs, Alexander B. Chase, Stefano Manzoni, Philippe Ciais, Steven D. Allison
Published in: Global Change Biology, 2024, ISSN 1354-1013
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/gcb.17268

Metatranscriptomic markers of fungal growth, respiration and carbon-use efficiency

Author(s): Hasby F. A., Barbi F., Manzoni S., Lindahl B.D.
Published in: FEMS Microbiology Letters, 2021, ISSN 1574-6968
Publisher: Oxford University Press
DOI: 10.1093/femsle/fnab100

Energetic scaling in microbial growth

Author(s): Calabrese S., Chakrawal A., Manzoni S., Van Cappellen P.
Published in: Proceedings of the National Academy of Sciences of the United States of America, 2021, ISSN 1091-6490
Publisher: United States National Academy of Sciences
DOI: 10.1073/pnas.2107668118

Interacting Bioenergetic and Stoichiometric Controls on Microbial Growth

Author(s): Chakrawal, Arjun; Calabrese, Salvatore; Herrmann, Anke M.; Manzoni, Stefano
Published in: Crossref, 2022, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2022.859063

Advances in modelling soil microbial dynamics

Author(s): Stefano Manzoni, Joshua P. Schimel
Published in: Soil Biology and Biochemistry, Issue 197, 2024, Page(s) 109535, ISSN 0038-0717
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.soilbio.2024.109535

Spatial Control of Microbial Pesticide Degradation in Soil: A Model-Based Scenario Analysis

Author(s): Erik Schwarz; Swamini Khurana; Arjun Chakrawal; Luciana Chavez Rodriguez; Johannes Wirsching; Thilo Streck; Stefano Manzoni; Martin Thullner; Holger Pagel
Published in: Crossref, 2022, ISSN 1520-5851
Publisher: American Chemical Society
DOI: 10.1021/acs.est.2c03397

Primary production in subsidized green-brown food webs

Author(s): Yuval Zelnik, Stefano Manzoni, Riccardo Bommarco
Published in: Frontiers in Ecology and Evolution, 2023, ISSN 2296-701X
Publisher: Frontiers Media
DOI: 10.3389/fevo.2023.1106461

The coordination of green–brown food webs and their disruption by anthropogenic nutrient inputs

Author(s): Yuval R. Zelnik; Stefano Manzoni; Riccardo Bommarco
Published in: Crossref, 2022, ISSN 1466-8238
Publisher: Wiley-Blackwell
DOI: 10.1111/geb.13576

Microbial carbon use efficiency promotes global soil carbon storage

Author(s): Feng Tao, Yuanyuan Huang, Bruce A. Hungate, Stefano Manzoni, Serita D. Frey, Michael W. I. Schmidt, Markus Reichstein, Nuno Carvalhais, Philippe Ciais, Lifen Jiang, Johannes Lehmann, Ying-Ping Wang, Benjamin Z. Houlton, Bernhard Ahrens, Umakant Mishra, Gustaf Hugelius, Toby D. Hocking, Xingjie Lu, Zheng Shi, Kostiantyn Viatkin, Ronald Vargas, Yusuf Yigini, Christian Omuto, Ashish A. Malik, Guiller
Published in: Nature, 2023, ISSN 0028-0836
Publisher: Nature Publishing Group
DOI: 10.1038/s41586-023-06042-3

Intracellular Storage Reduces Stoichiometric Imbalances in Soil Microbial Biomass – A Theoretical Exploration

Author(s): Stefano Manzoni; Stefano Manzoni; Yang Ding; Charles Warren; Callum C. Banfield; Michaela A. Dippold; Michaela A. Dippold; Kyle Mason-Jones
Published in: VOLUME=9;ISSN=2296-701X;TITLE=Frontiers in Ecology and Evolution, Issue 3, 2021, ISSN 2296-701X
Publisher: Frontiers Media
DOI: 10.3389/fevo.2021.714134

Vegetation, topography, and soil depth drive microbial community structure in two Swedish grasslands

Author(s): Daniela Guasconi; Jaanis Juhanson; Karina E Clemmensen; Sara A O Cousins; Gustaf Hugelius; Stefano Manzoni; Nina Roth; Petra Fransson
Published in: Crossref, Issue 1, 2023, ISSN 1574-6941
Publisher: Oxford University Press
DOI: 10.1093/femsec/fiad080

Validating laboratory predictions of soil rewetting respiration pulses using field data

Author(s): Xiankun Li, Marleen Pallandt, Dilip Naidu, Johannes Rousk, Gustaf Hugelius, Stefano Manzoni
Published in: Biogeosciences, Issue 22, 2025, Page(s) 2691-2705, ISSN 1726-4189
Publisher: Copernicus GmbH
DOI: 10.5194/bg-22-2691-2025

Community composition and physiological plasticity control microbial carbon storage across natural and experimental soil fertility gradients

Author(s): Orpheus M. Butler, Stefano Manzoni, Charles R. Warren
Published in: ISME Journal, 2023, ISSN 1751-7362
Publisher: Nature Publishing Group
DOI: 10.1038/s41396-023-01527-5

Recovery of Soil Microbial Metabolism After Rewetting Depends on Interacting Environmental Conditions and Changes in Functional Groups and Life History Strategies

Author(s): Xiankun Li, Ainara Leizeaga, Johannes Rousk, Siyuan Zhou, Gustaf Hugelius, Stefano Manzoni
Published in: Global Change Biology, Issue 30, 2025, ISSN 1354-1013
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/gcb.17522

Organic carbon stabilization in temperate paddy fields and adjacent semi-natural forests along a soil age gradient

Author(s): Erik Schwarz, Anna Johansson, Cristina Lerda, John Livsey, Anna Scaini, Daniel Said-Pullicino, Stefano Manzoni
Published in: Geoderma, 2024, ISSN 0016-7061
Publisher: Elsevier BV
DOI: 10.1016/j.geoderma.2024.116825

Decomposition rate as an emergent property of optimal microbial foraging

Author(s): Stefano Manzoni; Arjun Chakrawal; Glenn Ledder
Published in: Crossref, Issue 2, 2023, ISSN 2296-701X
Publisher: Frontiers Media
DOI: 10.3389/fevo.2023.1094269

Microbial storage and its implications for soil ecology

Author(s): Mason-Jones K., Robinson S., Veen G. F. C., Manzoni S., van der Putten W.H.
Published in: ISME Journal, 2021, ISSN 1751-7370
Publisher: Nature Publishing Group
DOI: 10.1038/s41396-021-01110-w

An optimal control problem for resource utilisation by microorganisms

Author(s): Ledder G., Manzoni S.
Published in: International Journal of Mathematical Education in Science and Technology, 2024, ISSN 0020-739X
Publisher: John Wiley & Sons Inc.
DOI: 10.1080/0020739x.2023.2254314

Consistent responses of vegetation gas exchange to elevated atmospheric CO2 emerge from heuristic and optimization models

Author(s): Manzoni S., Fatichi S., Feng X., Katul G. G., Way D., Vico G.
Published in: Biogeosciences, 2022, ISSN 1726-4189
Publisher: Copernicus Publications
DOI: 10.5194/bg-19-4387-2022

Modelling optimal ligninolytic activity during plant litter decomposition

Author(s): Arjun Chakrawal, Björn D. Lindahl, Stefano Manzoni
Published in: New Phytologist, 2024, ISSN 0028-646X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/nph.19572

Interactive effects of microbial functional diversity and carbon availability on decomposition – A theoretical exploration

Author(s): Swamini Khurana; Rose Abramoff; Elisa Bruni; Marta Dondini; Boris Tupek; Bertrand Guenet; Aleksi Lehtonen; Stefano Manzoni
Published in: Crossref, Issue 1, 2023, ISSN 0304-3800
Publisher: Elsevier BV
DOI: 10.1016/j.ecolmodel.2023.110507

Microbial physiology conserves phosphorus across long-term ecosystem development

Author(s): O. M. Butler, S. Manzoni, G. Liang, S. Matsumura, C. R. Warren
Published in: Nature Geoscience, Issue 18, 2025, Page(s) 503-509, ISSN 1752-0894
Publisher: Nature Publishing Group
DOI: 10.1038/s41561-025-01696-2

When and why microbial-explicit soil organic carbon models can be unstable

Author(s): Erik Schwarz, Samia Ghersheen, Salim Belyazid, Stefano Manzoni
Published in: Biogeosciences, 2024, ISSN 1726-4189
Publisher: Copernicus GmbH
DOI: 10.5194/egusphere-2024-348

Emerging multiscale insights on microbial carbon use efficiency in the land carbon cycle

Author(s): Xianjin He, Elsa Abs, Steven D. Allison, Feng Tao, Yuanyuan Huang, Stefano Manzoni, Rose Abramoff, Elisa Bruni, Simon P. K. Bowring, Arjun Chakrawal, Philippe Ciais, Lars Elsgaard, Pierre Friedlingstein, Katerina Georgiou, Gustaf Hugelius, Lasse Busk Holm, Wei Li, Yiqi Luo, Gaëlle Marmasse, Naoise Nunan, Chunjing Qiu, Stephen Sitch, Ying-Ping Wang, Daniel S. Goll
Published in: Nature Communications, Issue 15, 2024, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-024-52160-5

Comparing plant litter molecular diversity assessed from proximate analysis and 13C NMR spectroscopy

Author(s): Arjun Chakrawal, Björn D. Lindahl, Odeta Qafoku, Stefano Manzoni
Published in: Soil Biology and Biochemistry, Issue 197, 2024, Page(s) 109517, ISSN 0038-0717
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.soilbio.2024.109517

Soil organic carbon models need independent time-series validation for reliable prediction

Author(s): Julia Le Noë; Stefano Manzoni; Rose Abramoff; Tobias Bölscher; Elisa Bruni; Rémi Cardinael; Philippe Ciais; Claire Chenu; Hugues Clivot; Delphine Derrien; Fabien Ferchaud; Patricia Garnier; Daniel Goll; Gwenaëlle Lashermes; Manuel Martin; Daniel Rasse; Frédéric Rees; Julien Sainte-Marie; Elodie Salmon; Marcus Schiedung; Josh Schimel; William Wieder; Samuel Abiven; Pierre Barré; Lauric Céci
Published in: 158, Issue 11, 2023, ISSN 2662-4435
Publisher: Nature Portfolio
DOI: 10.1038/s43247-023-00830-5

Temperature controls the relation between soil organic carbon and microbial carbon use efficiency

Author(s): Zhaoyang Luo, Jianning Ren, Stefano Manzoni, Simone Fatichi
Published in: Global Change Biology, Issue 30, 2025, ISSN 1354-1013
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/gcb.17492

Stronger compensatory thermal adaptation of soil microbial respiration with higher substrate availability

Author(s): Lingrui Qu, Chao Wang, Stefano Manzoni, Marina Dacal, Fernando T Maestre, Edith Bai
Published in: The ISME Journal, Issue 18, 2025, ISSN 1751-7362
Publisher: Nature Publishing Group
DOI: 10.1093/ismejo/wrae025

Water limitation regulates positive feedback of increased ecosystem respiration

Author(s): Qin Zhang, Chuixiang Yi, Georgia Destouni, Georg Wohlfahrt, Yakov Kuzyakov, Runze Li, Eric Kutter, Deliang Chen, Max Rietkerk, Stefano Manzoni, Zhenkun Tian, George Hendrey, Wei Fang, Nir Krakauer, Gustaf Hugelius, Jerker Jarsjo, Jianxu Han, Shiguo Xu
Published in: Nature Ecology & Evolution, Issue 8, 2024, Page(s) 1870-1876, ISSN 2397-334X
Publisher: Springer Science and Business Media LLC
DOI: 10.1038/s41559-024-02501-w

Drying intensity and acidity slow down microbial growth recovery after rewetting dry soils

Author(s): Xiankun Li; Ainara Leizeaga; Johannes Rousk; Gustaf Hugelius; Stefano Manzoni
Published in: Crossref, Issue 2, 2023, ISSN 1879-3428
Publisher: Elsevier
DOI: 10.1016/j.soilbio.2023.109115

Reply to “Beyond microbial carbon use efficiency”

Author(s): Feng Tao; Johannes Lehmann; Ying-Ping Wang; Lifen Jiang; Bernhard Ahrens; Kostiantyn Viatkin; Stefano Manzoni; Benjamin Z Houlton; Yuanyuan Huang; Xiaomeng Huang; Yiqi Luo
Published in: National Science Review, Issue 2, 2024, ISSN 2053-714X
Publisher: Oxford University Press
DOI: 10.1093/nsr/nwae058

When dry soil is re-wet trehalose is respired instead of supporting microbial growth

Author(s): Charles Warren, Stefano Manzoni
Published in: Soil Biology and Biochemistry, 2023, ISSN 0038-0717
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.soilbio.2023.109121

The mechanisms underpinning microbial resilience to drying and rewetting – A model analysis

Author(s): Brangarí A. C., Manzoni S., Rousk J.
Published in: Soil Biology and Biochemistry, 2021, ISSN 1879-3428
Publisher: Elsevier
DOI: 10.1016/j.soilbio.2021.108400

Feasibility of Formulating Ecosystem Biogeochemical Models From Established Physical Rules

Author(s): Jinyun Tang, William J. Riley, Stefano Manzoni, Federico Maggi
Published in: Journal of Geophysical Research: Biogeosciences, Issue 129, 2024, ISSN 2169-8953
Publisher: American Geophysical Union (AGU)
DOI: 10.1029/2023jg007674

Dryland productivity under a changing climate

Author(s): Wang, Lixin Jiao, Wenzhe MacBean, Natasha Rulli, Maria Cristina Manzoni, Stefano Vico, Giulia D'Odorico, Paolo
Published in: Nature Climate Change, 2022, ISSN 1758-678X
Publisher: Nature Publishing Group
DOI: 10.1038/s41558-022-01499-y

Other (4)

Time series of soil microbial growth and respiration rates after rewetting of dry soils. Dataset version 1.

Author(s): Xiankun Li, Ainara Leizeaga, Lettice Hicks, Irene Cordero, Jin-Tao Li, Yuqian Tang, Sara Winterfeldt, Albert C. Brangarí, Annelein Meisner, Stefano Manzoni, Johannes Rousk
Published in: 2024
Publisher: Bolin Centre Database
DOI: 10.17043/li-2024-microbial-growth-respiration-1

Numerical stability analysis of an archetypal microbial-explicit soil organic carbon model

Author(s): Erik Schwarz
Published in: 2024
Publisher: Zenodo
DOI: 10.5281/zenodo.12749207

Particulate and mineral associated organic matter from ¹³C and ¹⁵N residue labelling studies from 2002 to 2024. Dataset version 1

Author(s): Stefano Manzoni, Jian Jin, Xinchang Kou, Joanna Ridgeway, Xiaoke Zhang, Francesca Cotrufo
Published in: 2024
Publisher: Bolin Centre Database
DOI: 10.17043/manzoni-2024-residue-stabilization-1

Validating laboratory insights into the drivers of soil rewetting respiration pulses with field measurements

Author(s): Xiankun Li, Marleen Pallandt, Dilip Naidu, Johannes Rousk, Gustaf Hugelius, Stefano Manzoni
Published in: 2025
Publisher: Copernicus GmbH
DOI: 10.5194/egusphere-2024-3324