Knowledge At the Tip of Your fingers: Clinical Knowledge for Humanity

Project Information

KATY

Grant agreement ID: 101017453

DOI 10.3030/101017453

EC signature date 4 December 2020

Start date 1 January 2021

End date 31 December 2024

Funded under

• SOCIETAL CHALLENGES - Health, demographic change and well-being

Total cost € 8 479 900,00

EU contribution € 8 479 900,00

Coordinated by

UNIVERSITA DEGLI STUDI DI ROMA TOR VERGATA
Italy

Deliverables

Websites, patent fillings, videos etc. (2)

Public project website
Audio-visual material

Audiovisual material

Documents, reports (1)

Position paper

Publications

Conference proceedings (13)

VOWLMap: graph-based ontology alignment visualization and editing

Author(s): Ana Guerreiro, Catia Pesquita, and Daniel Faria
Published in: International Semantic Web Conference (ISWC) 2021: Posters, Demos, and Industry Tracks., Issue Vol-2980, 2021
Publisher: CEUR Workshop Proceedings

Hierarchy of Hybrid Deep Neural Networks for Physical Action Classification by Brain-Computer Interface

Author(s): Kostiantyn Kostiukevych, Yuri Gordienko, Nikita Gordienko, Oleksandr Rokovyi, and Sergii Stirenko
Published in: MoMLeT+DS 2022: 4th International Workshop on Modern Machine Learning Technologies and Data Science, 2023
Publisher: CEUR Workshop Proceedings

HoechstGAN: Virtual Lymphocyte Staining Using Generative Adversarial Networks

Author(s): Georg Wölflein, In Hwa Um, David J Harrison, Ognjen Arandjelović
Published in: 2023
Publisher: arxiv
DOI: 10.48550/arxiv.2210.06909

Extending agreementmakerlight to perform holistic ontology matching

Author(s): Marta Contreiras Silva, Daniel Faria, and Catia Pesquit
Published in: 2022
Publisher: LASIGE, Faculdade de Ciˆencias da Universidade de Lisboa, Portugal

Digital health innovations - Good practice guide for obtaining consent for the use of personal health information for research and innovations

Author(s): Barud, Katarzyna et al.
Published in: CEN Workshop Agreement 17933, 2023
Publisher: CEN

Pattern-Guided Association Rule Mining for Complex Ontology Alignment

Author(s): Beatriz Lima, Daniel Faria, and Catia Pesquita
Published in: International Semantic Web Conference (ISWC) 2021: Posters, Demos, and Industry Tracks, Issue Vol-2980, 2021
Publisher: CEUR Workshop Proceedings

Link Prediction Method in Graph Objects by Auto Encoding in Graph Neural Networks

Author(s): Vladyslav Shlianin, Yuri Gordienko, and Sergii Stirenko1
Published in: 2023
Publisher: CEUR Workshop Proceedings

Matching Multiple Ontologies to Build aKnowledge Graph for Personalized Medicine

Author(s): Marta Contreiras Silva , Daniel Faria, and Catia Pesquit
Published in: 2023
Publisher: LASIGE, Faculdade de Ciˆencias da Universidade de Lisboa, Portugal

Home HCI International 2022 - Late Breaking Papers. Multimodality in Advanced Interaction Environments Conference paperHybrid Convolutional, Recurrent and Attention-Based Architectures of Deep Neural Networks for Classification of Human-Computer Interaction by Electroencephalography

Author(s): Nikita Gordienko, Oleksandr Rokovyi, Yuri Gordienko & Sergii Stirenko
Published in: HCI International 2022 - Late Breaking Papers. Multimodality in Advanced Interaction Environments, 2022, Page(s) 453–468, ISBN 978-3-031-17617-3
Publisher: Springer
DOI: 10.1007/978-3-031-17618-0_32

Hierarchy of Hybrid Deep Neural Networks for Physical Action Classification by Brain-Computer Interface

Author(s): Kostiantyn Kostiukevych, Yuri Gordienko, Nikita Gordienko, Oleksandr Rokovyi, and Sergii Stirenko
Published in: 2022
Publisher: CEUR Workshop Proceedings

Effect of Small Dataset Quality on Deep Neural Network Performance for Lyme Disease Classification

Author(s): Oholtsov, I., Gordienko, Y., Stirenko, S
Published in: Soft Computing for Security Applications. Advances in Intelligent Systems and Computing, Issue vol 1428, 2022, Page(s) 561–573, ISBN 978-981-19-3589-3
Publisher: Springer

Link Prediction Method in Graph Objects by Auto Encoding in Graph Neural Networks

Author(s): Vladyslav Shlianin, Yuri Gordienko, and Sergii Stirenko
Published in: 2022
Publisher: ISSN 1613-0073 CEUR Workshop Proceedings

Matching Multiple Ontologies to Build a Knowledge Graph for Personalized Medicine

Author(s): Marta Contreiras Silva, Daniel Faria, and Catia Pesquit
Published in: 2022
Publisher: LASIGE, Faculdade de Ciencias da Universidade de Lisboa, Portugal

Peer reviewed articles (9)

Whole-Slide Images and Patches of Clear Cell Renal Cell Carcinoma Tissue Sections Counterstained with Hoechst 33342, CD3, and CD8 Using Multiple Immunofluorescence

Author(s): Wölflein, G.; Um, I.H.; Harrison, D.J.; Arandjelović, O.
Published in: Data, Issue 8, 40, 2023, ISSN 2306-5729
Publisher: MDPI
DOI: 10.3390/data8020040

Transcription Factor NFE2L1 Decreases in Glomerulonephropathies after Podocyte Damage

Author(s): Elshani, M.; Um, I.H.; Leung, S.; Reynolds, P.A.; Chapman, A.; Kudsy, M.; Harrison, D.J.
Published in: Cells, Issue 12(17), 2165, 2023, ISSN 2073-4409
Publisher: MDPI
DOI: 10.3390/cells12172165

Unraveling the glycosylated immunopeptidome with HLA-Glyco

Author(s): Bedran, G., Polasky, D.A., Hsiao, Y. et al.
Published in: Nature Communications, Issue 14, 3461, 2023, ISSN 2041-1723
Publisher: Nature Publishing Group

Ontologies and Knowledge Graphs in Oncology Research

Author(s): Silva, Marta Contreiras, Patrícia Eugénio, Daniel Faria, and Catia Pesquita
Published in: Cancers 2022, Issue 14(8), 1906, 2022, ISSN 2072-6694
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cancers14081906

An Overview of Epigenetics in Clear Cell Renal Cell Carcinoma

Author(s): STAMATIKI GRAMMATIKAKI, HECTOR KATIFELIS, AMMAD AHMAD FAROOQI, KONSTANTINOS STRAVODIMOS, MICHALIS V. KARAMOUZIS, KYRIAKOS SOULIOTIS, DIMITRIOS VARVARAS and MARIA GAZOULI
Published in: In Vivo, Issue 37 (1) 1-10, 2023, ISSN 0258-851X
Publisher: International Institute of Anticancer Research
DOI: 10.21873/invivo.13049

The Role of HIF1-related Genes and Non-coding RNAs Expression in Clear Cell Renal Cell Carcinoma

Author(s): STAMATIKI GRAMMATIKAKI, HECTOR KATIFELIS, KONSTANTINOS STRAVODIMOS, EMMANOUIL BAKOLAS, NIKOLAOS KAVANTZAS, DIMITRA GRIGORIADOU, MARIA GAZOULI
Published in: In Vivo, Issue 37 (3) 1103-1110, 2023, ISSN 0258-851X
Publisher: International Institute of Anticancer Research
DOI: 10.21873/invivo.13185

Inflammation and Immunity Gene Expression Patterns and Machine Learning Approaches in Association with Response to Immune-Checkpoint Inhibitors-Based Treatments in Clear-Cell Renal Carcinoma

Author(s): Dovrolis, N.; Katifelis, H.; Grammatikaki, S.; Zakopoulou, R.; Bamias, A.; Karamouzis, M.V.; Souliotis, K.; Gazouli, M.
Published in: Cancers, Issue 15(23), 5637, 2023, ISSN 2072-6694
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cancers15235637

Use of High-Plex Data Reveals Novel Insights into the Tumour Microenvironment of Clear Cell Renal Cell Carcinoma

Author(s): De Filippis R, Wölflein G, Um IH, Caie PD, Warren S, White A, Suen E, To E, Arandjelović O, Harrison DJ
Published in: Cancers, Issue Cancers 14, no. 21: 5387, 2022, ISSN 2072-6694
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cancers14215387

Robustness and Complexity of Directed and Weighted Metabolic Hypergraphs

Author(s): Traversa, P.; Ferraz de Arruda, G.; Vazquez, A.; Moreno, Y.
Published in: Entropy, Issue 25, 1537, 2023, ISSN 1099-4300
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/e25111537

Book chapters (8)

Deep Learning with Metadata Augmentation for Classification of Diabetic Retinopathy Level

Author(s): Shulha, M., Gordienko, Y., Stirenko, S.
Published in: Proceedings of Third International Conference on Sustainable Expert Systems . Lecture Notes in Networks and Systems, 2023, Page(s) 613–630, ISBN 978-981-19-7873-9
Publisher: Springer

Multi-label Classification of Cervix Types with Image Size Optimization for Cervical Cancer Prescreening by Deep Learning

Author(s): Tomko, M., Pavliuchenko, M., Pavliuchenko, I., Gordienko, Y., Stirenko, S.
Published in: Inventive Computation and Information Technologies. Lecture Notes in Networks and Systems, Issue vol 563, 2023, Page(s) 885–902, ISBN 978-981-19-7401-4
Publisher: Springer

Consent and Retrospective Data Collection

Author(s): Anwana, T.O., Barud, K., Cepic, M., Johnson, E., Königseder, M., Wagner, MC
Published in: The Law and Ethics of Data Sharing in Health Sciences, 2023, Page(s) 99–125, ISBN 978-981-99-6539-7
Publisher: Springer
DOI: 10.1007/978-981-99-6540-3_7

Improving U-Net Kidney Glomerulus Segmentation with Fine-Tuning, Dataset Randomization and Augmentations

Author(s): Statkevych, R., Gordienko, Y., Stirenko, S.
Published in: Advances in Computer Science for Engineering and Education. ICCSEEA 2022. Lecture Notes on Data Engineering and Communications Technologies, Issue vol 134, 2022, Page(s) 488–498, ISBN 978-3-031-04811-1
Publisher: Springer
DOI: 10.1007/978-3-031-04812-8_42

Expansion Rate Parametrization and K-Fold Based Inference with U-Net Neural Networks for Multiclass Medical Image Segmentation

Author(s): Statkevych, R., Gordienko, Y., Stirenko, S.
Published in: Artificial Intelligence and Soft Computing. ICAISC 2023. Lecture Notes in Computer Science, Issue vol 14125, 2023, Page(s) 251–262, ISBN 978-3-031-42504-2
Publisher: Springer
DOI: 10.1007/978-3-031-42505-9_22

Implementation of Personalized Medicine by Artificial Intelligence Platform

Author(s): Yakimenko, Y., Stirenko, S., Koroliouk, D., Gordienko, Y., Zanzotto, F.M.
Published in: Soft Computing for Security Applications. Advances in Intelligent Systems and Computing, Issue vol 1428, 2022, Page(s) 597–611, ISBN 978-981-19-3589-3
Publisher: Springer
DOI: 10.1007/978-981-19-3590-9_46

Ensemble Knowledge Distillation for Edge Intelligence in Medical Applications

Author(s): Gordienko, Y. et al.
Published in: Advancements in Knowledge Distillation: Towards New Horizons of Intelligent Systems. Studies in Computational Intelligence, Issue vol 1100, 2023, Page(s) 135–168, ISBN 978-3-031-32094-1
Publisher: Springer
DOI: 10.1007/978-3-031-32095-8_5

Impact of Multimodal Model Complexity on Classification of Diabetic Retinopathy Level

Author(s): Shulha, M., Gordienko, Y., Stirenko, S.
Published in: Computational Intelligence, Data Analytics and Applications. ICCIDA 2022. Lecture Notes in Networks and Systems, Issue vol 643, 2023, Page(s) 168–180, ISBN 978-3-031-27098-7
Publisher: Springer

Other (2)

A comprehensive library of canonical and non-canonical MHC class I antigens for cancer vaccine development

Author(s): Georges Bedran, Tongjie Wang, Dominika Pankanin, et al.
Published in: bioRxiv, 2022
Publisher: bioRxiv
DOI: 10.1101/2022.01.13.475872

Spatial Metabolomics co-registered with Multiplex Phenotyping for the Evaluation of Human Kidney Tissue

Author(s): Greice M Zickuhr, In Hwa Um, Alexander Laird, David J Harrison, Alison L Dickson
Published in: bioRxiv 2023.11.10.566529, 2023
Publisher: bioRxiv
DOI: 10.1101/2023.11.10.566529