Overcoming the frontiers of biomolecular studies on human history and adaptation using palaeoproteomics

Assessing the Potential of Ancient Protein Sequences in the Study of Hominid Evolution

Auteurs: Ioannis Patramanis, Laurits Skov, Enrico Cappellini, Fernando Racimo
Publié dans: Genome Biology and Evolution, Numéro 18, 2026, ISSN 1759-6653
Éditeur: Oxford University Press
DOI: 10.1093/gbe/evag035

Phylogenetic Signal in Primate Tooth Enamel Proteins and its Relevance for Paleoproteomics

Auteurs: Ricardo Fong-Zazueta, Johanna Krueger, David M Alba, Xènia Aymerich, Robin M D Beck, Enrico Cappellini, Guillermo Carrillo-Martin, Omar Cirilli, Nathan Clark, Omar E Cornejo, Kyle Kai-How Farh, Luis Ferrández-Peral, David Juan, Joanna L Kelley, Lukas F K Kuderna, Jordan Little, Joseph D Orkin, Ryan S Paterson, Harvinder Pawar, Tomas Marques-Bonet, Esther Lizano
Publié dans: Genome Biology and Evolution, Numéro 17, 2025, ISSN 1759-6653
Éditeur: Oxford University Press
DOI: 10.1093/gbe/evaf007

The Japanese Archipelago sheltered cave lions, not tigers, during the Late Pleistocene

Auteurs: Xin Sun, Lanhui Peng, Takumi Tsutaya, Qigao Jiangzuo, Yoshikazu Hasegawa, Yuxin Hou, Yu Han, Yan Zhuang, Nuno Filipe Gomes Martins, Jazmin Ramos Madrigal, Alberto J. Taurozzi, Meaghan Mackie, Gaudry Trochė, Jesper V. Olsen, Enrico Cappellini, Stephen J. O’Brien, M. Thomas P. Gilbert, Nobuyuki Yamaguchi, Shu-Jin Luo
Publié dans: Proceedings of the National Academy of Sciences, Numéro 123, 2026, Page(s) e2523901123, ISSN 0027-8424
Éditeur: National Academy of Sciences
DOI: 10.1073/pnas.2523901123

Results from an Australopithecus africanus dental enamel fragment confirm the potential of palaeoproteomics for South African Plio-Pleistocene fossil sites

Auteurs: Palesa P. Madupe, Fazeelah Munir, Marc Dickinson, Alberto J. Taurozzi, Meaghan Mackie, Mirriam Tawane, Catherine Mollereau, Nomawethu Hlazo, Kirsty Penkman, Lauren Schroeder, Clément Zanolli, Jesper V. Olsen, Rebecca R. Ackermann, Enrico Cappellini
Publié dans: South African Journal of Science, Numéro 121, 2025, ISSN 1996-7489
Éditeur: Academy of Science of South Africa
DOI: 10.17159/sajs.2025/18571

Enamel proteins reveal biological sex and genetic variability in southern African <i>Paranthropus</i>

Auteurs: Palesa P. Madupe, Claire Koenig, Ioannis Patramanis, Patrick L. Rüther, Nomawethu Hlazo, Meaghan Mackie, Mirriam Tawane, Johanna Krueger, Alberto J. Taurozzi, Gaudry Troché, Job Kibii, Robyn Pickering, Marc R. Dickinson, Yonatan Sahle, Dipuo Kgotleng, Charles Musiba, Fredrick Manthi, Liam Bell, Michelle DuPlessis, Catherine Gilbert, Bernhard Zipfel, Lukas F. K. Kuderna, Esther Lizano, Frido Welk
Publié dans: Science, Numéro 388, 2025, Page(s) 969-973, ISSN 0036-8075
Éditeur: American Association for the Advancement of Science
DOI: 10.1126/science.adt9539

Geometric morphometrics and paleoproteomics enlighten the paleodiversity of Pongo

Auteurs: Jülide Kubat, Ryan Paterson, Ioannis Patramanis, Graeme Barker, Fabrice Demeter, Arnaud Filoux, Ottmar Kullmer, Meaghan Mackie, Tomas Marques-Bonet, Nguyen Thi Mai Huong, Nguyen Anh Tuan, Sytha Pheng, Jessica Rippengal, Friedemann Schrenk, Viengkeo Souksavatdy, Lim Tze Tshen, Athiwat Wattanapituksakul, Wei Wang, Clément Zanolli, Enrico Cappellini, Anne-Marie Bacon
Publié dans: PLOS ONE, Numéro 18, 2024, Page(s) e0291308, ISSN 1932-6203
Éditeur: Public Library of Science
DOI: 10.1371/journal.pone.0291308

PaleoProPhyler: a reproducible pipeline for phylogenetic inference using ancient proteins

Auteurs: Ioannis Patramanis, Jazmín Ramos-Madrigal, Enrico Cappellini, Fernando Racimo
Publié dans: Peer Community Journal, Numéro 3, 2023, ISSN 2804-3871
Éditeur: PCI
DOI: 10.24072/pcjournal.344

SPIN enables high throughput species identification of archaeological bone by proteomics

Auteurs: Patrick Leopold Rüther, Immanuel Mirnes Husic, Pernille Bangsgaard, Kristian Murphy Gregersen, Pernille Pantmann, Milena Carvalho, Ricardo Miguel Godinho, Lukas Friedl, João Cascalheira, Alberto John Taurozzi, Marie Louise Schjellerup Jørkov, Michael M. Benedetti, Jonathan Haws, Nuno Bicho, Frido Welker, Enrico Cappellini & Jesper Velgaard Olsen
Publié dans: nature communications, Numéro 13, 2022, Page(s) Article number: 2458, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-022-30097-x

Phylogenetically informative proteins from an Early Miocene rhinocerotid

Auteurs: Ryan S. Paterson, Meaghan Mackie, Alessio Capobianco, Nicola S. Heckeberg, Danielle Fraser, Beatrice Demarchi, Fazeelah Munir, Ioannis Patramanis, Jazmín Ramos-Madrigal, Shanlin Liu, Abigail D. Ramsøe, Marc R. Dickinson, Chloë Baldreki, Marisa Gilbert, Raffaele Sardella, Luca Bellucci, Gabriele Scorrano, Michela Leonardi, Andrea Manica, Fernando Racimo, Eske Willerslev, Kirsty E. H. Penkman, Je
Publié dans: Nature, Numéro 643, 2025, Page(s) 719-724, ISSN 0028-0836
Éditeur: Nature Publishing Group
DOI: 10.1038/s41586-025-09231-4

Deep-time phylogenetic inference by paleoproteomic analysis of dental enamel

Auteurs: Alberto J. Taurozzi, Patrick L. Rüther, Ioannis Patramanis, Claire Koenig, Ryan Sinclair Paterson, Palesa P. Madupe, Florian Simon Harking, Frido Welker, Meaghan Mackie, Jazmín Ramos-Madrigal, Jesper V. Olsen, Enrico Cappellini
Publié dans: Nature Protocols, Numéro 19, 2024, Page(s) 2085-2116, ISSN 1754-2189
Éditeur: Nature Publishing Group
DOI: 10.1038/s41596-024-00975-3

Automated High-Throughput Biological Sex Identification from Archeological Human Dental Enamel Using Targeted Proteomics

Auteurs: Claire Koenig, Patricia Bortel, Ryan S. Paterson, Barbara Rendl, Palesa P. Madupe, Gaudry B. Troché, Nuno Vibe Hermann, Marina Martínez de Pinillos, María Martinón-Torres, Sandra Mularczyk, Marie Louise Schjellerup Jørkov, Christopher Gerner, Fabian Kanz, Ana Martinez-Val, Enrico Cappellini, Jesper V. Olsen
Publié dans: Journal of Proteome Research, Numéro 23, 2024, Page(s) 5107-5121, ISSN 1535-3893
Éditeur: American Chemical Society
DOI: 10.1021/acs.jproteome.4c00557

A male Denisovan mandible from Pleistocene Taiwan

Auteurs: Takumi Tsutaya, Rikai Sawafuji, Alberto J. Taurozzi, Zandra Fagernäs, Ioannis Patramanis, Gaudry Troché, Meaghan Mackie, Takashi Gakuhari, Hiroki Oota, Cheng-Hsiu Tsai, Jesper V. Olsen, Yousuke Kaifu, Chun-Hsiang Chang, Enrico Cappellini, Frido Welker
Publié dans: Science, Numéro 388, 2025, Page(s) 176-180, ISSN 0036-8075
Éditeur: American Association for the Advancement of Science
DOI: 10.1126/science.ads3888

Human‐like enamel growth in <i>Homo naledi</i>

Auteurs: Patrick Mahoney, Gina McFarlane, Alberto J. Taurozzi, Palesa P. Madupe, Mackie C. O'Hara, Keneiloe Molopyane, Enrico Cappellini, John Hawks, Matthew M. Skinner, Lee Berger
Publié dans: American Journal of Biological Anthropology, Numéro 184, 2024, ISSN 2641-4597
Éditeur: John Wiley & Sons
DOI: 10.1002/ajpa.24893

Enamel proteins reveal biological sex and genetic variability within southern African Paranthropus

Auteurs: Palesa P. Madupe, Claire Koenig, Ioannis Patramanis, Patrick L. Rüther, Nomawethu Hlazo, Meaghan Mackie, Mirriam Tawane, Johanna Krueger, Alberto J. Taurozzi, Gaudry Troché, Job Kibii, Robyn Pickering, Marc Dickinson, Yonatan Sahle, Dipuo Kgotleng, Charles Musiba, Fredrick Manthi, Liam Bell, Michelle DuPlessis, Catherine Gilbert, Bernhard Zipfel, Lukas F. K. Kuderna, Esther Lizano, Frido Welker,
Publié dans: bioRxiv, Numéro 2023.07.03.547326, 2023
Éditeur: bioRxiv.org
DOI: 10.1101/2023.07.03.547326

Automated high-throughput biological sex identification from archaeological human dental enamel using targeted proteomics

Auteurs: Claire Koenig, Patricia Bortel, Ryan S. Paterson, Barbara Rendl, Palesa P. Madupe, Gaudry B. Troché, Nuno Vibe Hermann, Marina Martínez de Pinillos, María Martinón-Torres, Sandra Mularczyk, Marie Louise Schjellerup Jørkov, Christopher Gerner, Fabian Kanz, Ana Martinez-Val, Enrico Cappellini, Jesper V. Olsen
Publié dans: bioRxiv, 2024
Éditeur: bioRxiv.org
DOI: 10.1101/2024.02.20.581140

Preliminary palaeoproteomic insights into the Plio-Pleistocene australopiths from South Africa

Auteurs: Madupe, Palesa; Rüther, Patrick Leopold; Hlazo, Nomawethu; Mackie, Meaghan; Patramanis, Ioannis; Taurozzi, Alberto; Tawane, Mirriam; Schroeder, Lauren; Racimo, Fernando; Zanolli, Clément; Olsen, Jesper; Ackermann, Rebecca; Cappellini, Enrico
Publié dans: https://www.eshe.eu/pastmeeting/2022/, Numéro 1, 2023
Éditeur: HAL open Science
DOI: 10.48738/2022.iss2.809

Preliminary palaeoproteomic insights into the Plio-Pleistocene australopiths from South Africa

Auteurs: Madupe, Palesa; Rüther, Patrick Leopold; Hlazo, Nomawethu; Mackie, Meaghan; Patramanis, Ioannis; Taurozzi, Alberto; Tawane, Mirriam; Schroeder, Lauren; Racimo, Fernando; Zanolli, Clément; Olsen, Jesper; Ackermann, Rebecca; Cappellini, Enrico
Publié dans: 12th Annual Meeting of the European Society for the Study of Human Evolution Abstracts Tübingen, 22-24 September 2022, Numéro Vol. 2022 No. 2 (2022): PaleoAnthropology - Published Oct 27, 2022, 2022, Page(s) 530, ISSN 1545-0031
Éditeur: Paleoanthropology Society & European Society for the study of Human Evolution

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Overcoming the frontiers of biomolecular studies on human history and adaptation using palaeoproteomics

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