The industrialization, urbanization and centralization of modern societies have led to rising demands of energy and resources, accompanied by the production of large and persistent amounts of biodegradable waste and wastewater streams. These waste streams need to be managed, treated, reused, or disposed adequately to decrease the detrimental effects on the surrounding environment and human health. European Union (EU) directives, United Nations sustainable development goals, and an increasing number of individual citizens are advocating for a systematic change towards resource recovery schemes. Transforming waste and wastewater into renewable energy, clean water and add-value products achieves these goals with a threefold benefit by reducing environmental impact, offsetting raw materials demands and promoting circular bioeconomy markets. As part of this mission, the EU Best Available Techniques reference documents on Industrial Emissions (Directive 2010/75/EU) recommends energy-producing anaerobic biotechnologies for the treatment of biodegradable waste streams. Anaerobic biotechnologies are a mixed-culture microbial-mediated process that transforms biodegradable organic compounds into renewable energy in the form of methane-rich biogas or add-value compounds such as volatile fatty acids that can be used to produce bioplastics. To promote the widespread adoption of anaerobic biotechnologies for the valorization of biodegradable waste streams, the objective of this action was to quantify the distinctive role of beneficial microbes to improve the performance, robustness, and economic feasibility of anaerobic biotechnologies. To this aim, the action identified process-critical microorganisms to produce add-value compounds from anaerobic fermentation from food waste and sewage sludge, and their relationship towards process optimization laying the foundations to develop and improve microbial management strategies.