IMPROVE: a feature model to predict neoepitope immunogenicity through broad-scale validation of T-cell recognition
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Author(s):
Annie Borch, Ibel Carri, Birkir Reynisson, Heli M. Garcia Alvarez, Kamilla K. Munk, Alessandro Montemurro, Nikolaj Pagh Kristensen, Siri A. Tvingsholm, Jeppe Sejerø Holm, Christina Heeke, Keith Henry Moss, Ulla Kring Hansen, Anna-Lisa Schaap-Johansen, Frederik Otzen Bagger, Vinicius Araujo Barbosa de Lima, Kristoffer S. Rohrberg, Samuel A. Funt, Marco Donia, Inge Marie Svane, Ulrik Lassen, Carolina Barra, Morten Nielsen, Sine Reker Hadrup
Published in:
Frontiers in Immunology, Issue 15, 2024, ISSN 1664-3224
Publisher:
Frontiers Media SA
DOI:
10.3389/fimmu.2024.1360281
Simultaneous analysis of pMHC binding and reactivity unveils virus-specific CD8 T cell immunity to a concise epitope set
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Author(s):
Nikolaj Pagh Kristensen, Edoardo Dionisio, Amalie Kai Bentzen, Tripti Tamhane, Janine Sophie Kemming, Grigorii Nos, Lasse Frank Voss, Ulla Kring Hansen, Georg Michael Lauer, Sine Reker Hadrup
Published in:
Science Advances, Issue 10, 2024, ISSN 2375-2548
Publisher:
American Association for the Advancement of Science (AAAS)
DOI:
10.1126/sciadv.adm8951
Clonal driver neoantigen loss under EGFR TKI and immune selection pressures
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Author(s):
Maise Al Bakir; James L. Reading; Samuel Gamble; Rachel Rosenthal; Imran Uddin; Andrew Rowan; Joanna Przewrocka; Amber Rogers; Yien Ning Sophia Wong; Amalie K. Bentzen; Selvaraju Veeriah; Sophia Ward; Aaron T. Garnett; Paula Kalavakur; Carlos Martínez-Ruiz; Clare Puttick; Ariana Huebner; Daniel E. Cook; David A. Moore; Chris Abbosh; Crispin T. Hiley; Cristina Naceur-Lombardelli; Thomas B. K. Watkins; Marina Petkovic; Roland F. Schwarz; Felipe Gálvez-Cancino; Kevin Litchfield; Peter Meldgaard; Boe Sandahl Sorensen; Line Bille Madsen; Dirk Jäger; Martin D. Forster; Tobias Arkenau; Clara Domingo-Vila; Timothy I. M. Tree; Mohammad Kadivar; Sine Reker Hadrup; Benny Chain; Sergio A. Quezada; Nicholas McGranahan; Charles Swanton
Published in:
Nature, Issue 8065, 2025, ISSN 2375-2548
Publisher:
Nature
DOI:
10.25418/CRICK.28760819.V1