MARINE BIODIVERSITY ASSESSMENT AND PREDICTION ACROSS SPATIAL, TEMPORAL AND HUMAN SCALES

Informations projet

BIOcean5D

N° de convention de subvention: 101059915

DOI

10.3030/101059915

Date de signature de la CE 3 Juin 2022

Date de début 1 Decembre 2022

Date de fin 30 Avril 2027

Financé au titre de

• Food, Bioeconomy Natural Resources, Agriculture and Environment

Coût total

€ 15 449 903,00

Contribution de l’UE

€ 15 449 902,50

Coordonné par

EUROPEAN MOLECULAR BIOLOGY LABORATORY
Germany

CORDIS fournit des liens vers les livrables publics et les publications des projets HORIZON.

Les liens vers les livrables et les publications des projets du 7e PC, ainsi que les liens vers certains types de résultats spécifiques tels que les jeux de données et les logiciels, sont récupérés dynamiquement sur OpenAIRE .

Livrables

Documents, reports (2)

Data management plan

Report that describes all the scientific data outputs produced by each WP, and where they feed in the project. Report should describe as well the data requirements needed for each of the WPs to perform the required analysis, and its sources. The details of data input/output should be described in sufficient depth to maximize the use of the report through the project The obligation to provide the data input/output requirements lies with each WP task leads. This information will be synthesized by EMBL and sent for revision to all partners before submitting the final report.

BIOcean5D sampling Handbook

BIOcean5D Handbook describing the suite of technologies and protocols used for holistic assessment of marine biodiversity and contextual data (virus to mammals; water-sediment-air-soil).Partners involved in WP1 and WP2 will provide their input. EMBL will summarize all the received information, distribute it to consortium for their revision, and finally write the report.

Data sets, microdata, etc (1)

BIOcean5D data hub

BIOcean5D data hub for multi-method and multi-stream biodiversity data. The data hub will employ scalable and secure means of data storage and distribution, simplifying downstream analyses. Due to the large scale and heterogeneous nature of the data, we will invest in and optimize hardware and software specifications of data analysis and management, e.g. scalable high-performance database management systems integrating information from heterogeneous sources. The hub will be used primarily for the internal consortium data dissemination across WPs, before the data can be uploaded to public platforms.

Publications

Peer reviewed articles (58)

Global gradients in species richness of marine plankton functional group

Auteurs: Benedetti F, Gruber N, Vogt M
Publié dans: Journal of Plankton Research, 2023, ISSN 1464-3774
Éditeur: OUP
DOI: 10.1093/plankt/fbad044

BioSamples database: the global hub for sample metadata and multi-omics integration

Auteurs: Dipayan Gupta, Isuru Liyanage, Yasset Perez-Riverol, Enrique Sapena Ventura, Wei Kheng Teh, Tim Van Den Bossche, Senthilnathan Vijayaraja, Amnon Khen, Ugis Sarkans, Tony Burdett, Jeena Rajan
Publié dans: Nucleic Acids Research, Numéro 54, 2026, ISSN 0305-1048
Éditeur: Oxford University Press (OUP)
DOI: 10.1093/NAR/GKAF1133

Integrating eDNA and acoustic-trawl data to provide small pelagic biomass estimates for fish stock assessment

Auteurs: Cristina Claver, Beatriz Sobradillo, Iñaki Mendibil, Oriol Canals, Guillermo Boyra, Leire Ibaibarriaga, Ryan P Kelly, Naiara Rodríguez-Ezpeleta
Publié dans: ICES Journal of Marine Science, Numéro 83, 2026, ISSN 1054-3139
Éditeur: Oxford University Press (OUP)
DOI: 10.1093/ICESJMS/FSAG005

Interplay of structured and random interactions in complex ecosystems dynamics

Auteurs: Martínez, Juan; Barbier, Matthieu; Monte, Silvia
Publié dans: PLOS Computational Biology, Numéro 21(12), 2024, ISSN 1553-7358
Éditeur: PLOS
DOI: 10.1101/2024.11.25.624858

Global climate-change trends detected in indicators of ocean ecology

Auteurs: B. B. Cael, K. Bisson, E. Boss, S. Dutkiewicz, and S. Henson
Publié dans: Nature, 2023, ISSN 1476-4687
Éditeur: Springer Nature
DOI: 10.1038/s41586-023-06321-z

Data on Europe-wide public preferences for plankton-based ecosystem services and marine biodiversity from a series of deliberative monetary valuation workshops

Auteurs: Gilles Jean-Louis, Julian R. Massenberg, Bartosz Bartkowski
Publié dans: Data in Brief, Numéro 60, 2025, ISSN 2352-3409
Éditeur: Elsevier BV
DOI: 10.1016/J.DIB.2025.111488

Stabilization of macroscopic dynamics by fine-grained disorder in many-species ecosystems

Auteurs: Giral Martínez, Juan; de Monte, Silvia; Barbier, Matthieu
Publié dans: Physical Review E, Numéro 112, 2025, ISSN 2470-0053
Éditeur: American Physical Society
DOI: 10.48550/ARXIV.2411.14969

Benchmark of plankton images classification: emphasizing features extraction over classifier complexity

Auteurs: Thelma Panaïotis, Emma Amblard, Guillaume Boniface-Chang, Gabriel Dulac-Arnold, Benjamin Woodward, Jean-Olivier Irisson
Publié dans: Earth System Science Data, Numéro 18, 2026, ISSN 1866-3516
Éditeur: Copernicus GmbH
DOI: 10.5194/ESSD-18-945-2026

A new sampling device for metabarcoding surveillance of port communities and detection of non-indigenous species

Auteurs: Zarcero J. Antich A, Rius M, Wangensteen OS, Turon X
Publié dans: iScience, 2024, ISSN 2589-0042
Éditeur: Cell Press Elsevier Inc.
DOI: 10.1016/j.isci.2023.108588

The Spatiotemporal Variability of Marine Plankton Ecosystem Services at the Regional Scale: A Combined Approach Using a Systematic Review and Network Analysis

Auteurs: Luca Russo, Daniele Bellardini, Raffaella Casotti, Priscilla Licandro, Maria Grazia Mazzocchi, Arantza Murillas, Isabella Percopo, Diana Sarno, Domenico D’Alelio
Publié dans: Sustainability, Numéro 17, 2025, ISSN 2071-1050
Éditeur: MDPI AG
DOI: 10.3390/SU17031182

Metalog: curated and harmonised contextual data for global metagenomics samples

Auteurs: Michael Kuhn, Thomas Sebastian B Schmidt, Pamela Ferretti, Anna Głazek, Shahriyar Mahdi Robbani, Wasiu Akanni, Anthony Fullam, Christian Schudoma, Ela Cetin, Mariam Hassan, Kasimir Noack, Anna Schwarz, Roman Thielemann, Leonie Thomas, Moritz von Stetten, Renato Alves, Anandhi Iyappan, Ece Kartal, Ivan Kel, Marisa I Keller, Oleksandr Maistrenko, Anna Mankowski, Suguru Nishijima, Daniel Podlesny, Jonas Schiller, Sarah Schulz, Thea Van Rossum, Peer Bork
Publié dans: Nucleic Acids Research, Numéro 54, 2025, ISSN 0305-1048
Éditeur: Oxford University Press (OUP)
DOI: 10.1093/NAR/GKAF1118

Innovative and practical tools for monitoring and assessing biodiversity status and impacts of multiple human pressures in marine systems

Auteurs: Angel Borja, Torsten Berg, Hege Gundersen, Anders Gjørwad Hagen, Kasper Hancke, Samuli Korpinen, Miguel C. Leal, Tiziana Luisetti, Iratxe Menchaca, Ciaran Murray, GerJan Piet, Sophie Pitois, Naiara Rodríguez‐Ezpeleta, James E. Sample, Elizabeth Talbot, Ma
Publié dans: Environmental Monitoring and Assessment, Numéro Vol. 196, 2024, ISSN 0167-6369
Éditeur: Springer
DOI: 10.1007/S10661-024-12861-2

Spatio-temporal metabarcoding surveys in ports reveal homogenised communities of non-indigenous species with high genetic diversity and connectivity

Auteurs: J. Zarcero, A. Antich, M. Fernández-Tejedor, C. Palacín, O. S. Wangensteen, M. Rius, X. Turon
Publié dans: Scientific Reports, Numéro 16, 2026, ISSN 2045-2322
Éditeur: Springer Science and Business Media LLC
DOI: 10.1038/S41598-026-49393-3

<scp>ANIS</scp> ‐E: An Atlas of Marine Non‐Indigenous Species in Europe

Auteurs: Clément Violet, Mathieu Chevalier, Amelia Curd, Frédérique Viard
Publié dans: Global Ecology and Biogeography, Numéro 35, 2026, ISSN 1466-822X
Éditeur: Wiley
DOI: 10.1111/GEB.70242

The European Nucleotide Archive in 2025

Auteurs: Yuan David, Ahamed Alisha, Athar Awais, Devaraj Rajkumar, Gupta Dipayan, Haseeb Muhammad, Ihsan Maira, Ivanov Eugene, Kadhirvelu Vishnukumar, Khen Amnon, Kumar Manish, Lathi Ankur, Liyanage Isuru, Meszaros Lili, O’Cathail Colman, Pauperio Joana, Paz Ruben, Pesant Stephane, Rahman Nadim, Rajan Jeena, Tutis Iva, Ventouratou Marianna, Vijayaraja Senthilnathan, Waheed Zahra, Woollard Peter, Burdett Tony, Cochrane Guy, Sarkans Ugis
Publié dans: Nucleic Acids Research, Numéro 54, 2026, ISSN 0305-1048
Éditeur: Oxford University Press (OUP)
DOI: 10.1093/NAR/GKAF1295

Ubiquity of inverted ’gelatinous’ ecosystem pyramids in the global ocean

Auteurs: Lombard Fabien, Guidi Lionel, Manoela C. Brandão, Coelho Luis Pedro, Colin Sébastien, Dolan John Richard, Elineau Amanda, Josep M Gasol, Grondin Pierre Luc, Henry Nicolas, Federico M Ibarbalz, Jalabert Laëtitia, Loreau Michel, Martini Séverinne, Mériguet
Publié dans: bioRxiv, 2024, ISSN 2692-8205
Éditeur: bioRxiv - the preprint server for biology
DOI: 10.1101/2024.02.09.579612

Evolution and stability of social learning in animal migration

Auteurs: Thøger Engelund Knudsen; Brian R. MacKenzie; Uffe Høgsbro Thygesen; Patrizio Mariani
Publié dans: Movement Ecology, Numéro 13:43, 2025, ISSN 2051-3933
Éditeur: Springer Nature
DOI: 10.1186/S40462-025-00564-3

Transportome remodeling of a symbiotic microalga inside a planktonic host

Auteurs: C Juery; A Auladell; Z Füssy; F Chevalier; DP Yee; E Pelletier; E Corre; AE Allen; DJ Richter; J Decelle
Publié dans: The ISME Journal, Numéro Volume 18, Numéro 1, 2024, ISSN 1751-7370
Éditeur: oxford university Press
DOI: 10.1093/ISMEJO/WRAE239

Data Science Journal

Auteurs: Margaret O'Brien; Ruth E. Duerr; Riley Taitingfong; Andrew Martinez; Lourdes Vera; Lydia L. Jennings; Robert R. Downs; Erin Antognoli; Talya Ten Brink; Nicole B. Halmai; Dominique David-Chavez; Stephanie Russo Carroll; Maui Hudson; Pier Luigi Buttigieg
Publié dans: Data Science Journal, Numéro 23: 37, pp. 1–29, 2024, ISSN 1683-1470
Éditeur: Ubiquity Press in partnership with CODATA
DOI: 10.31223/X58408

Indirect Effects of Temperature Drive Gradients in Fish Food Web Properties

Auteurs: Azenor Bideault, Matthieu Barbier, Arnaud Sentis, Michel Loreau, Dominique Gravel
Publié dans: Global Ecology and Biogeography, Numéro 34, 2025, ISSN 1466-822X
Éditeur: Wiley
DOI: 10.1111/GEB.70110

How many independent quantities can be extracted from ocean color?

Auteurs: B. B. Cael, Kelsey Bisson, Emmanuel Boss, Zachary K. Erickson
Publié dans: Limnology and Oceanography Letters, Numéro 8, 2023, ISSN 2378-2242
Éditeur: Wiley
DOI: 10.1002/LOL2.10319

Marine Biodiversity in a Coastal Periphery Revealed by a Community-Based Monitoring Approach Integrating Citizen Science and Environmental DNA Metabarcoding

Auteurs: Daniele Bellardini, Daniele De Luca, Luca Russo, Rosalia Calicchio, Cristina Castracani, Pasquale De Luca, Iole Di Capua, Federica Massimi, Anja Raggio, Alessia Riccardi, Jessica Vannini, Gennaro Attanasio, Paolo Vassallo, Roberto Sandulli, Marco Signore, Emanuela Dattolo, Domenico D′Alelio
Publié dans: Environments, Numéro 12, 2025, ISSN 2076-3298
Éditeur: MDPI AG
DOI: 10.3390/ENVIRONMENTS12120474

Overcoming the disconnect between species interaction networks and biodiversity conservation

Auteurs: Gabriel Dansereau, João Braga, Gentile Francesco Ficetola, Núria Galiana, Dominique Gravel, Luigi Maiorano, José M. Montoya, Louise O’Connor, Laura Pollock, Wilfried Thuiller, Timothée Poisot, Ceres Barros
Publié dans: Trends in Ecology &amp; Evolution, Numéro 40, 2025, ISSN 0169-5347
Éditeur: Elsevier BV
DOI: 10.1016/J.TREE.2025.05.010

A Machine Learning‐Based Dissolved Organic Carbon Climatology

Auteurs: Thelma Panaïotis, Jamie Wilson, BB Cael
Publié dans: Geophysical Research Letters, Numéro 52, 2025, ISSN 0094-8276
Éditeur: American Geophysical Union (AGU)
DOI: 10.1029/2024GL112792

Genome-resolved biogeography of Phaeocystales, cosmopolitan bloom-forming algae

Auteurs: Zoltán Füssy, Robert H. Lampe, Kevin R. Arrigo, Kerrie Barry, Margaret M. Brisbin, Corina P. D. Brussaard, Johan Decelle, Colomban de Vargas, Giacomo R. DiTullio, Liam D. H. Elbourne, Marc E. Frischer, David M. Goodstein, Igor V. Grigoriev, Richard D. Hayes, Adam L. Healey, Chase C. James, Jerry W. Jenkins, Caroline Juery, Manish Kumar, Adam B. Kustka, Florian Maumus, Anna M. G. Novák Vanclová, Miroslav Oborník, Ian T. Paulsen, Ian Probert, Mak A. Saito, Jeremy Schmutz, Tomáš Skalický, Diego Tec-Campos, Hannah Tomelka, Pavlína Věchtová, Pratap Venepally, Brendan Wilson-Mortier, Karsten Zengler, Hong Zheng, Andrew E. Allen
Publié dans: Nature Communications, Numéro 16, 2025, ISSN 2041-1723
Éditeur: Springer Science and Business Media LLC
DOI: 10.1038/S41467-025-63565-1

Phytoplankton Dynamics in Subtropical Gyres: New Insights Into Biomass and Physiology From 25 Years of Satellite Observations

Auteurs: Chiara Volta, Marco Bellacicco, Xiaogang Xing, Guo Yang, Salvatore Marullo
Publié dans: Geophysical Research Letters, Numéro 52, 2025, ISSN 0094-8276
Éditeur: American Geophysical Union (AGU)
DOI: 10.1029/2024GL111817

The European Nucleotide Archive in 2023

Auteurs: David Yuan; Alisha Ahamed; Josephine Burgin; Carla Cummins; Rajkumar Devraj; Khadim Gueye; Dipayan Gupta; Vikas Gupta; Muhammad Haseeb; Maira Ihsan; Eugene Ivanov; Suran Jayathilaka; Vishnukumar Balavenkataraman Kadhirvelu; Manish Kumar; Ankur Lathi; Rasko Leinonen; Jasmine McKinnon; Lili Meszaros; Colman O’Cathail; Dennis Ouma; Joana Paupério; Stephane Pesant; Nadim Rahman; Gabriele Rinck; Sandeep Selvakumar; Swati Suman; Yanisa Sunthornyotin; Marianna Ventouratou; Senthilnathan Vijayaraja; Zahra Waheed; Peter Woollard; Ahmad Zyoud; Tony Burdett; Guy Cochrane
Publié dans: Nucleic Acids Research, 2023, ISSN 1362-4962
Éditeur: Oxford University Press
DOI: 10.1093/NAR/GKAD1067

Spatiotemporal changes of pelagic food webs investigated by environmental DNA metabarcoding and connectivity analysis

Auteurs: Daniele Bellardini, Luca Russo, Viviana Di Tuccio, Daniele De Luca, Gabriele Del Gaizo, Gianpaolo Zampicinini, Florian Kokoszka, Vincenzo Botte, Francesco Colloca, Fabio Conversano, Pasquale De Luca, Daniele Iudicone, Francesca Margiotta, Simona Saviano,
Publié dans: Philosophical transactions B, Numéro Vol. 379, 2024, ISSN 0962-8436
Éditeur: The Royal Society publishing
DOI: 10.1098/RSTB.2023.0178

Mapping Topic Evolution across the 40-Year-Old Long-Term Ecological Research MareChiara Site in the Gulf of Naples, Italy

Auteurs: Luca Russo; Carola Murano; Domenico D’Alelio
Publié dans: Oceans, Numéro 2024,5,591–610, 2024, ISSN 2673-1924
Éditeur: MDPI
DOI: 10.3390/OCEANS5030034

Ecosystems

Auteurs: Beñat Iglesias, Maite Louzao, Izaskun Preciado, Maysa Ito, Joan Giménez, Lucía López-López, Paula Méndez-Fernandez, Tiphaine Chouvelon, Paco Bustamante, Jérôme Spitz, Xavier Corrales, Eider Andonegi, Aitor Lekanda, Javier Franco, Guillermo Boyra, María Sa
Publié dans: Ecosystems, 2025, ISSN 1432-9840
Éditeur: Springer Nature
DOI: 10.1007/S10021-025-00990-9

The European Nucleotide Archive in 2024

Auteurs: Colman O’Cathail; Alisha Ahamed; Josephine Burgin; Carla Cummins; Rajkumar Devaraj; Khadim Gueye; Dipayan Gupta; Vikas Gupta; Muhammad Haseeb; Maira Ihsan; Eugene Ivanov; Suran Jayathilaka; Vishnukumar Kadhirvelu; Manish Kumar; Ankur Lathi; Rasko Leinonen; Jasmine McKinnon; Lili Meszaros; Joana Pauperio; Stephane Pesant; Nadim Rahman; Gabriele Rinck; Sandeep Selvakumar; Swati Suman; Yanisa Sunthornyotin; Marianna Ventouratou; Zahra Waheed; Peter Woollard; David Yuan; Ahmad Zyoud; Tony Burdett; Guy Cochrane
Publié dans: Nucleic Acids Research, Numéro Volume 53, Numéro D1, 6 January 2025, Pages D49–D55,, 2024, ISSN 1362-4962
Éditeur: wOxford University Press
DOI: 10.1093/NAR/GKAE975

Diel and tidal rhythms drive fish acoustic communities in a European kelp forest

Auteurs: Marine Ethève, Pierre Thiriet, Gaëlle Legras, Philippe Lenfant, François Bourrin, Lucia Di Iorio
Publié dans: BMC Ecology and Evolution, Numéro 26, 2026, ISSN 2730-7182
Éditeur: Springer Science and Business Media LLC
DOI: 10.1186/S12862-026-02521-Z

Quantitative imaging datasets of surface micro- to mesoplankton communities and microplastic across the Pacific and North Atlantic oceans from the Tara Pacific expedition

Auteurs: Mériguet, Zoé; Bourdin, Guillaume; Kristan, Nathaniel; Jalabert, Laetitia; Bun, Olivier; Picheral, Marc; Caray-Counil, Louis; Maury, Juliette; Pedrotti, Maria-Luiza; Elineau, Amanda; Paz-Garcia, David A.; Karp-Boss, Lee; Gorsky, Gaby; Lombard, Fabien; the Tara Pacific Consortium Coordinators team
Publié dans: Earth System Science Data, 2025, ISSN 1866-3516
Éditeur: Göttingen: Copernicus Publications
DOI: 10.5194/ESSD-17-2761-2025

Spatio-temporal larval abundance dynamics of a depleted Baltic Sea herring ecotype

Auteurs: Henn Ojaveer; Bastian Huwer; Dorte Bekkevold; Heli Einberg; Lotte Worsøe Clausen; Brian R MacKenzie
Publié dans: ICES Journal of Marine Science, Numéro Vol. 81, Numéro 8, 1594–1606, 2024, ISSN 1095-9289
Éditeur: Oxford University Press / International Council for the Exploration of the Sea
DOI: 10.1093/ICESJMS/FSAE102

Genetic Sex and Origin Identification Suggests Differential Migration of Male and Female Atlantic Bluefin Tuna (Thunnus thynnus) in the Northeast Atlantic

Auteurs: Brodin, Tomas; Cardinale, Massimiliano; Casini, Michele; Hellström, Gustav; Lundberg, Petter; Sundelöf, Andreas
Publié dans: Evolutionary Applications, Numéro 17:e70009, 2024, ISSN 1752-4571
Éditeur: John Wiley & Sons Ltd.
DOI: 10.1111/EVA.70009

Earth Science Data Repositories: Implementing the CARE Principles

Auteurs: Margaret O’Brien, Ruth Duerr, Riley Taitingfong, Andrew Martinez, Lourdes Vera, Lydia L. Jennings, Robert R. Downs, Erin Antognoli, Talya Ten Brink, Nicole B. Halmai, Dominique David-Chavez, Stephanie Russo Carroll, Maui Hudson, Pier Luigi Buttigieg
Publié dans: Data Science Journal, Numéro 23, 2024, ISSN 1683-1470
Éditeur: Ubiquity Press, Ltd.
DOI: 10.5334/DSJ-2024-037

Zoom into a twilight zone: a biodiversity survey of the Dohrn Canyon (Mediterranean sea) through environmental DNA metabarcoding

Auteurs: Luca Russo; Daniele Bellardini; Daniele De Luca; Gabriele Del Gaizo; Gianpaolo Zampicinini; Pietro Battaglia; Gianluca Liguori; Pasquale De Luca; Domenico D’Alelio
Publié dans: Community Ecology, Numéro Volume 25, pages 403–411, 2024, ISSN 1588-2756
Éditeur: Springer Nature
DOI: 10.1007/S42974-024-00207-4

Transportome remodeling of a symbiotic microalga inside a planktonic host

Auteurs: C Juery, A Auladell, View ORCID ProfileZ Füssy, F Chevalier, DP Yee, View ORCID ProfileE Pelletier, E Corre, AE Allen, DJ Richter, J Decelle
Publié dans: bioRxiv, 2024, ISSN 2692-8205
Éditeur: Cold Spring Harbor Laboratory
DOI: 10.1101/2024.06.01.596945

The NEREA Augmented Observatory: an integrative approach to marine coastal ecology

Auteurs: Lucia Campese; Luca Russo; Maria Abagnale; Adriana Alberti; Giancarlo Bachi; Cecilia Balestra; Daniele Bellardini; Angela Buondonno; Ulisse Cardini; Ylenia Carotenuto; Giovanni Checcucci; Maria Luisa Chiusano; Isabella D’Ambra; Giuliana d’Ippolito; Iole Di Capua; Vincenzo Donnarumma; Angelo Fontana; Marta Furia; Denisse Galarza-Verkovitch; Roberto Gallia; Karine Labadie; Serena Leone; Priscilla Licandro; Antonio Longo; Maira Maselli; Louise Merquiol; Carola Murano; Pedro H. Oliveira; Augusto Passarelli; Isabella Percopo; Aude Perdereau; Roberta Piredda; Francesca Raffini; Vittoria Roncalli; Hans-Joachim Ruscheweyh; Ennio Russo; Maria Saggiomo; Chiara Santinelli; Diana Sarno; Shinichi Sunagawa; Ferdinando Tramontano; Anna Chiara Trano; Marco Uttieri; Patrick Wincker; Gianpaolo Zampicinini; Raffaella Casotti; Fabio Conversano; Domenico D’Alelio; Daniele Iudicone; Francesca Margiotta; Marina Montresor
Publié dans: Scientific Data, Numéro 11, Article number: 989 (2024), 2024, ISSN 2052-4463
Éditeur: Springer Nature
DOI: 10.1038/S41597-024-03787-Y

Topics and trends in marine ecosystem services research over the long term

Auteurs: Luca Russo, Hélène Gomes, Arantza Murillas, Domenico D'Alelio
Publié dans: Environmental and Sustainability Indicators, Numéro 28, 2025, ISSN 2665-9727
Éditeur: Elsevier BV
DOI: 10.1016/J.INDIC.2025.100885

Nematode metabarcoding as an alternative to conventional benthic macrofauna monitoring of fish farming

Auteurs: Ngoc-Loi Nguyen, Tristan Cordier, Adrià Antich, Fabrizio Frontalini, Justyna Falkowska, Joanna Pawłowska, Jan Pawłowski
Publié dans: Marine Pollution Bulletin, Numéro 228, 2026, ISSN 0025-326X
Éditeur: Elsevier BV
DOI: 10.1016/J.MARPOLBUL.2026.119673

Valuing marine plankton: a review of ecosystem services and disservices and an expert assessment of the potential of area-based protection

Auteurs: Eva Wanek, Oscar Julian Esteban-Cantillo, Sacha Bourgeois-Gironde
Publié dans: Frontiers in Marine Science, Numéro 12, 2025, ISSN 2296-7745
Éditeur: Frontiers Media SA
DOI: 10.3389/FMARS.2025.1607996

Interactive effects of multiple stressors in coastal ecosystems

Auteurs: Shubham Krishna, Carsten Lemmen, Serra Örey, Jennifer Rehren, Julien Di Pane, Moritz Mathis, Miriam Püts, Sascha Hokamp, Himansu Kesari Pradhan, Matthias Hasenbein, Jürgen Scheffran, Kai W. Wirtz
Publié dans: Frontiers in Marine Science, Numéro 11, 2025, ISSN 2296-7745
Éditeur: Frontiers Media SA
DOI: 10.3389/FMARS.2024.1481734

Six key policy recommendations to advocate for marine conservation that matches the ocean’s dynamism

Auteurs: Esteban-Cantillo, Oscar; Abreu, André; Bourgeois-Gironde, Sacha; Wanek, Eva; Gurchani, Umer; Eveillard, Damien; Casati, Roberto
Publié dans: npj Ocean Sustainability, Numéro 4(50), 2025, ISSN 2731-426X
Éditeur: Nature Publishing Group (a division of Springer Nature)
DOI: 10.1038/S44183-025-00151-4

Biomass‐to‐volume ratio as a central continuous functional trait for marine zooplankton

Auteurs: Lemoine, Julie; Ayata, Sakina-Dorothée; Jaspers, Cornelia; Lombard, Fabien
Publié dans: Limnology and Oceanography, Numéro 9999, 2025, 1–15, 2025, ISSN 1939-5590
Éditeur: the Association for the Sciences of Limnology and Oceanography (ASLO) in partnership with John Wiley & Sons.
DOI: 10.1002/LNO.70171

CEPHALOPOD, a package to standardize marine habitat‐modelling practices and enhance inter‐comparability across biological observations

Auteurs: Alexandre Schickele, Corentin Clerc, Fabio Benedetti, Daniele De Angelis, Urs Hofmann Elizondo, Matthias Münnich, Jean‐Olivier Irisson, Meike Vogt
Publié dans: Methods in Ecology and Evolution, Numéro 16, 2025, ISSN 2041-210X
Éditeur: Wiley
DOI: 10.1111/2041-210X.70040

Developing and testing a new Ecological Quality Status index based on marine nematode metabarcoding: A proof of concept

Auteurs: Fabrizio Frontalini; Mattia Greco; Federica Semprucci; Kristina Cermakova; Thomas Merzi; Jan Pawlowski
Publié dans: Chemosphere, Numéro 370 (2025) 143992, 2024, ISSN 1879-1298
Éditeur: Elsevier
DOI: 10.1016/J.CHEMOSPHERE.2024.143992

Sea level rise: A plea for taking the viewpoint of the ocean

Auteurs: Roberto Casati, Augustin Portier, Clément Astruc Delor, Bernadette Baird-Zars, Christophe Cerino, Oscar Julian Esteban-Cantillo, Damien Eveillard, Stefano Malatesta, Marcella Schmidt di Friedberg
Publié dans: Marine Policy, Numéro 185, 2026, ISSN 0308-597X
Éditeur: Elsevier BV
DOI: 10.1016/J.MARPOL.2025.106972

The Spatial Distribution of Copepod Functional Traits in a Highly Anthropized Mediterranean Coastal Marine Region

Auteurs: Daniele Bellardini; Jessica Vannini; Luca Russo; Angela Buondonno; Maria Saggiomo; Paolo Vassallo; Maria Grazia Mazzocchi; Domenico D’Alelio; Priscilla Licandro
Publié dans: Environments, Numéro 11(6), 113, 2024, ISSN 2076-3298
Éditeur: MDPI
DOI: 10.3390/ENVIRONMENTS11060113

Predicting silky shark distribution in the eastern tropical Atlantic Ocean using fisheries dependent data

Auteurs: Leire Lopetegui-Eguren, Haritz Arrizabalaga, Hilario Murua, Nerea Lezama-Ochoa, Shane Griffiths, Jon Lopez, Jon Ruiz Gondra, Philippe S. Sabarros, María Lourdes Ramos Alonso, Maria José Juan-Jordá
Publié dans: Biodiversity and Conservation, Numéro 35, 2026, ISSN 0960-3115
Éditeur: Springer Science and Business Media LLC
DOI: 10.1007/S10531-026-03295-Y

Monothalamous foraminifera are useful bioindicators for DNA-based benthic monitoring of North Sea offshore platforms

Auteurs: Ngoc-Loi Nguyen, Fabrizio Frontalini, Vincent M.P. Bouchet, Kristina Cermakova, Thomas Merzi, Jan Pawłowski
Publié dans: Marine Environmental Research, Numéro 213, 2026, ISSN 0141-1136
Éditeur: Elsevier BV
DOI: 10.1016/J.MARENVRES.2025.107608

Realised Thermal Niches in Marine Ectotherms Are Shaped by Ontogeny and Trophic Interactions

Auteurs: Morell, Alaia; Shin, Yunne‐jai; Barrier, Nicolas; Travers-Trolet, Morgane; Ernande, Bruno
Publié dans: Ecology Letters, Numéro Volume27, Numéro11, 2024, ISSN 1461-0248
Éditeur: Wiley
DOI: 10.1111/ELE.70017

Bridging the gap between marine science and policy: communicating for an informed society and decision-making

Auteurs: Angel Borja, Julie Bremner, Kathrin Kopke, Sigi Gruber, Martin Alessandrini, Alice Estrela, Erasmia Kastanidi, Miguel C. Leal, María C. Uyarra, Michael Elliott
Publié dans: Frontiers in Communication, Numéro 10, 2025, ISSN 2297-900X
Éditeur: Frontiers Media SA
DOI: 10.3389/FCOMM.2025.1641970

Emergent Relationships Between the Functional Diversity of Marine Planktonic Copepods and Ecosystem Functioning in the Global Ocean

Auteurs: Fabio Benedetti, Jonas Wydler, Corentin Clerc, Nielja Knecht, Meike Vogt
Publié dans: Global Change Biology, Numéro 31, 2025, ISSN 1354-1013
Éditeur: Wiley
DOI: 10.1111/GCB.70094

Physiology and metabolism of eukaryotic microalgae involved in aquatic photosymbioses

Auteurs: Yee, Daniel; Juery, Caroline; Toullec, Gaëlle; Catacora-Grundy, Andrea; Lekieffre, Charlotte; Wangpraseurt, Daniel; Decelle, Johan
Publié dans: New Phytologist, Numéro 247: 71–89, 2025, ISSN 1469-8137
Éditeur: Wiley-Blackwell
DOI: 10.1111/NPH.70190

Unveiling the link between phytoplankton molecular physiology and biogeochemical cycling via genome-scale modeling

Auteurs: Régimbeau, Antoine; Aumont, Olivier; Bowler, Chris; Guidi, Lionel; Jackson, George; Karsenti, Eric; Mémery, Laurent; Tagliabue, Alessandro; Eveillard, Damien
Publié dans: Science Advances, Numéro vol. 11, No 23, 2025, ISSN 2375-2548
Éditeur: Science Advances
DOI: 10.1126/SCIADV.ADQ3593

Why do oceans shelter fewer species than land? A review on the role of sinking, dispersal and body size

Auteurs: Chust, Guillem; Alonso-Sáez, Laura; Villarino, Ernesto; Chave, Jerome; Rodriguez-Ezpeleta, Naiara; Arevalo, Elorri; Righetti, Damiano; Irigoien, Xabier
Publié dans: Oikos, Numéro vol. 2025, issue 12, 2025, ISSN 0030-1299
Éditeur: Wiley-Blackwell on behalf of the Nordic Society Oikos.
DOI: 10.5281/ZENODO.17292696

Effects of Mesozooplankton Growth and Reproduction on Plankton and Organic Carbon Dynamics in a Marine Biogeochemical Model

Auteurs: Clerc, Corentin; Bopp, Laurent; Benedetti, Fabio; Knecht, Nielja; Vogt, Meike; Aumont, Olivier
Publié dans: Global Biogeochemical Cycles, Numéro Volume38, Numéro9, 2024, ISSN 1944-9224
Éditeur: Wiley / American Geophysical Union (AGU)
DOI: 10.22541/ESSOAR.170983160.00886471/V1

Other (4)

Supplementary results from Spatiotemporal changes of pelagic food webs investigated by environmental DNA metabarcoding and connectivity analysis

Auteurs: Bellardini, Daniele; Russo, Luca; Di Tuccio, Viviana; De Luca, Daniele; Del Gaizo, Gabriele; Zampicinini, Gianpaolo; Kokoszka, Florian; Botte, Vincenzo; Colloca, Francesco; Conversano, Fabio; De Luca, Pasquale; Iudicone, Daniele; Margiotta, Francesca; Saviano, Simona; Vassallo, Paolo; Cianelli, Daniela; D’Alelio, Domenico
Publié dans: 2024
DOI: 10.6084/M9.FIGSHARE.26068036

Dynamic Ocean, Dynamic Solutions

Auteurs: Eveillard, Damien; Casati, Roberto; Bourgeois-Gironde, Sacha; Wanek, Eva; Esteban-Cantillo, Oscar Julian; Gurchani, Umer; ABREU DE ALMEIDA, Andre
Publié dans: 2024
Éditeur: Zenodo
DOI: 10.5281/ZENODO.13992053

Ratifying and Implementing the High Seas (BBNJ) Treaty

Auteurs: ABREU DE ALMEIDA, Andre
Publié dans: 2025
Éditeur: Zenodo
DOI: 10.5281/ZENODO.14605814

Blue Carbon: Navigating Risks and responsabilities in Geoengineeting solutions

Auteurs: ABREU DE ALMEIDA, Andre; Alessandrini, Martin
Publié dans: 2025
Éditeur: Zenodo
DOI: 10.5281/ZENODO.17105219

Book chapters (1)

Networks: The Visual Language of Complexity In: Stich, M., Carballido-Landeira, J. (eds) Nonlinear Dynamics for Biological Systems .

Auteurs: Vidiella, B., Duran-Nebreda, S., Valverde, S.
Publié dans: 2025
Éditeur: SEMA SIMAI Springer Series
DOI: 10.1007/978-3-031-99044-1_6

Thesis and dissertations (1)

Marine Plankton Diversity Across Latitudes: Linking Function and Climate Responses

Auteurs: Dominic Eriksson
Publié dans: 2026
Éditeur: ETH Research Collection
DOI: 10.3929/ETHZ-C-000797434