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The role of structural variation in adaptive radiation

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Career Development Plan (opens in new window)

Through delivery of StrucRadiation and with help from the host lab and institution, I will refine my project management skills, and gain insight into further development I may need in future academic endeavors. I will seek support and advice on project implementation and financial management of StrucRadiation from the Research Services and Career Development department at UNIVIE. I will take the opportunity to attend training events offered by the host institution, including “Development of externally funded project”, “Project Management” and “ERC project proposal writing”.During the course of StrucRadiation, I will deliver regular oral presentations on my work and scientific areas of research pertinent to StrucRadiation. I will present at lab meetings, journal clubs, departmental seminars and international conferences, and will take advantage of the vibrant network of leading centers in evolutionary biology across Vienna, EvolVienna (http://www.evolvienna.at), which will improve my networking skills and provide me with a wider forum in which to develop my communication skills. I will take advantage of the courses the host institution offers, such as “Teaching in higher education” and “Public Engagement”, and I will liaise with the Communication Department at UNIVIE to receive assistance with communication tools such as writing press releases. I will contribute to the teaching program of Prof. Paun at UNIVIE, with a guest lecture each year on structural variation and adaptive radiation, and I will contribute to practical courses dealing with on RNA-seq and structural variation. Finally, I will gain mentorship experience co-supervising undergraduate and graduate students in the group, especially those working with comparative genomics. Importantly, I will co-supervise together with Prof. Paun a PhD student (Teerna Khastgir, start of PhD Oct 2021) that works on population genomic analyses in New Caledonian Diospyros.

Communication, Dissemination & Outreach Plan (opens in new window)

Over the course of StrucRadiation, I will disseminate results at a variety of conferences to obtain feedback, increase the visibility of the research, and connect with other groups internationally to share expertise. I will give oral presentations at generalist audience conferences including ESEB and SMBE, and I will target more specialist conferences such as the International Congress on Transposable Elements. I will use Twitter during conferences (where appropriate) to increase my visibility and that of my research by using conference hashtags. Outside of conferences, I will post regular updates about StrucRadiation on Twitter and other platforms such as ResearchGate. Alongside conferences, I will disseminate results of StrucRadiation among the scientific community in Vienna by organising symposia in IBC and EvolVienna, inviting local speakers for constructive feedback on the project and helping to foster closer collaborative links across local departments. I will develop accessible material incorporating elements of StrucRadiation in the wider scope of issues in the public interest, such as the climate crisis, and participate in forums such as „BE OPEN – Science and Society Festival‟, Pint of Science Austria annual science festival, and European Researcher‟s Night, Lange Nacht der Forschung. I will use channels such as Twitter posts and press releases to raise awareness of my participation in these events, seeking out help from the Corporate Communications Unit at UNIVIE to do so.

Data Management Plan (opens in new window)

To enable an early and wide sharing of results, I will make appropriate use of preprint servers such as bioRxiv, and upon publication of results I will target Open Access journals. In line with FAIR principles, data collected will be digitized, organized, and, where appropriate, included as supplementary material with relevant published research. All raw sequence data will be stored in publicly accessible repositories including EMBL-EBI ENA and NCBI, and will be referenced in relevant preprints and publications. Consistent with the goals of reproducible and open research, I will store documented, versioned code in a GitHub repository under the GNU general public license version 3. I will archive code used to run analyses on Zenodo, and cite the versioned DOI in the manuscripts.

Publications

Ecological divergence is marked by species specific plastic gene expression and distinct rhizosphere among sibling allopolyploid marsh orchids (Dactylorhiza) (opens in new window)

Author(s): View ORCID ProfileKatie Emelianova, Anna-Sophie Hawranek, View ORCID ProfileMimmi C. Eriksson, View ORCID ProfileThomas M. Wolfe, View ORCID ProfileOvidiu Paun
Published in: biorxiv, 2024
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/2024.04.24.590886v2

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