Quality assessment of long read data in multisample lrRNA-seq experiments with SQANTI-reads
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Author(s):
Netanya Keil, Carolina Monzó, Lauren McIntyre, Ana Conesa
Published in:
Genome Research, 2025, ISSN 1088-9051
Publisher:
Cold Spring Harbor Laboratory
DOI:
10.1101/GR.280021.124
MOSim: bulk and single-cell multilayer regulatory network simulator
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Author(s):
Carolina Monzó, Maider Aguerralde-Martin, Carlos Martínez-Mira, Ángeles Arzalluz-Luque, Ana Conesa, Sonia Tarazona
Published in:
Briefings in Bioinformatics, Issue 26, 2025, ISSN 1467-5463
Publisher:
Oxford University Press (OUP)
DOI:
10.1093/BIB/BBAF110
Notable challenges posed by long-read sequencing for the study of transcriptional diversity and genome annotation
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Author(s):
Carolina Monzó, Adam Frankish, Ana Conesa
Published in:
Genome Research, 2025, ISSN 1088-9051
Publisher:
Cold Spring Harbor Laboratory
DOI:
10.1101/GR.279865.124
Transcriptomics in the era of long-read sequencing
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Author(s):
Carolina Monzó, Tianyuan Liu, Ana Conesa
Published in:
Nature Reviews Genetics, 2025, ISSN 1471-0056
Publisher:
Springer Science and Business Media LLC
DOI:
10.1038/S41576-025-00828-Z