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Animal cell types across evolutionary timescales: from regulatory characters to cell phylogenies

Project description

Evolutionary origins and diversification of animal cell types

Animals develop from a single cell ancestor through processes that involve transition to multicellularity. Understanding how different cell types originate and specialise over time is essential for explaining animal evolution. This diversification relies on changes in genetic and regulatory programmes. The ERC-funded CELL-SYSTEMATICS project will use Cnidaria, such as sea anemones, as a model system to study how cell types evolve. By integrating single cell analysis, functional genomics and advanced computational tools, the project will delineate how genes shape cell identity and reveal how new cell types arise. Comparative analysis of cells across species will help build a new framework for understanding the origin and diversification of animal cell types.

Objective

Cell types are the basic constituents of animal multicellularity, with each type defined by a gene regulatory program that specifies cell function and structure. Thus, understanding cell type diversity is key to explaining animal adaptation and evolution. However, despite recent advances in the molecular characterization of cell types, the phylogenetic relationships between animal cell types remain obscuremainly because we do not understand how the different elements of a cell type identity program (e.g. transcription factors and regulatory sequences) change over time and how these changes translate into cellular novelties.

This project will bridge the gap between cell type micro- and macroevolution, focusing on Cnidaria as a model to study cell type evolutionary processes. We will measure and compare cell identity characters across divergent timescales: from intraspecies variation between sea anemone populations, to cross-species comparisons within Cnidaria, to cross-phyla cell phylogenies. By combining single-cell and functional genomics experiments with advanced computational methods, we will: (i) build whole-organism genotypephenotype maps at cellular resolution, to explain the genetic basis of cell type evolution; (ii) model the evolutionary processes underlying the diversification, novelty, and functional adaptation of cell types across the cnidarian phylum; and (iii) study the evolutionary conservation and divergence rates of cell type regulatory characters to resolve the phylogenetic relationships between animal cell types (e.g. neurons, gland, epidermal, and sensory cells).

The expected results will offer a multi-level, quantitative, and phylogenetic perspective on animal cell types, allowing us to test long-standing hypotheses about cell type evolution. Our novel comparative framework will lay the foundations of cell systematics and provide transformative insights into a fundamental question in biology: how do cell types originate and diversify?

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HORIZON-ERC - HORIZON ERC Grants

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Call for proposal

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(opens in new window) ERC-2024-COG

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Host institution

FUNDACIO CENTRE DE REGULACIO GENOMICA
Net EU contribution

Net EU financial contribution. The sum of money that the participant receives, deducted by the EU contribution to its linked third party. It considers the distribution of the EU financial contribution between direct beneficiaries of the project and other types of participants, like third-party participants.

€ 1 999 960,00
Address
CARRER DOCTOR AIGUADER 88
08003 Barcelona
Spain

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Region
Este Cataluña Barcelona
Activity type
Research Organisations
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Total cost

The total costs incurred by this organisation to participate in the project, including direct and indirect costs. This amount is a subset of the overall project budget.

€ 1 999 960,00

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