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A Genetic View of Influenza Infection

Publications

Cell composition analysis of bulk genomics using single-cell data

Author(s): Amit Frishberg, Naama Peshes-Yaloz, Ofir Cohn, Diana Rosentul, Yael Steuerman, Liran Valadarsky, Gal Yankovitz, Michal Mandelboim, Fuad A. Iraqi, Ido Amit, Lior Mayo, Eran Bacharach, Irit Gat-Viks
Published in: Nature Methods, Issue 16/4, 2019, Page(s) 327-332, ISSN 1548-7091
Publisher: Nature Publishing Group
DOI: 10.1038/s41592-019-0355-5

Predicting Phenotypic Diversity from Molecular and Genetic Data

Author(s): Tom Harel, Naama Peshes-Yaloz, Eran Bacharach, Irit Gat-Viks
Published in: Genetics, Issue 213/1, 2019, Page(s) 297-311, ISSN 1943-2631
Publisher: Oxford academics
DOI: 10.1534/genetics.119.302463

ImmQuant: a user-friendly tool for inferring immune cell-type composition from gene-expression data

Author(s): Amit Frishberg, Avital Brodt, Yael Steuerman, Irit Gat-Viks
Published in: Bioinformatics, Issue 32/24, 2016, Page(s) 3842-3843, ISSN 1367-4803
Publisher: Oxford University Press
DOI: 10.1093/bioinformatics/btw535

POEM: Identifying Joint Additive Effects on Regulatory Circuits

Author(s): Maya Botzman, Aharon Nachshon, Avital Brodt, Irit Gat-Viks
Published in: Frontiers in Genetics, Issue 7, 2016, ISSN 1664-8021
Publisher: Frontiers Media
DOI: 10.3389/fgene.2016.00048

Exploiting Gene-Expression Deconvolution to Probe the Genetics of the Immune System

Author(s): Yael Steuerman, Irit Gat-Viks
Published in: PLOS Computational Biology, Issue 12/4, 2016, Page(s) e1004856, ISSN 1553-7358
Publisher: PLoS Comput Biol.
DOI: 10.1371/journal.pcbi.1004856

Dissection of Influenza Infection In Vivo by Single-Cell RNA Sequencing

Author(s): Yael Steuerman, Merav Cohen, Naama Peshes-Yaloz, Liran Valadarsky, Ofir Cohn, Eyal David, Amit Frishberg, Lior Mayo, Eran Bacharach, Ido Amit, Irit Gat-Viks
Published in: Cell Systems, Issue 6/6, 2018, Page(s) 679-691.e4, ISSN 2405-4712
Publisher: Cell
DOI: 10.1016/j.cels.2018.05.008

An integrative model of cardiometabolic traits identifies two types of metabolic syndrome

Author(s): Amit Frishberg, Inge van den Munckhof, Rob ter Horst, Kiki Schraa, Leo AB Joosten, Joost HW Rutten, Adrian C Iancu, Ioana M Dregoesc, Bogdan A Tigu, Mihai G Netea, Niels P Riksen, Irit Gat-Viks
Published in: eLife, Issue 10, 2021, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.7554/elife.61710

Inferring cellular heterogeneity of associations from single cell genomics

Author(s): Maya Levy, Amit Frishberg, Irit Gat-Viks
Published in: Bioinformatics, Issue 36/11, 2020, Page(s) 3466-3473, ISSN 1367-4803
Publisher: Oxford University Press
DOI: 10.1093/bioinformatics/btaa151

Exploring Neural Networks and Related Visualization Techniques in Gene Expression Data

Author(s): Roni Wilentzik Müller, Irit Gat-Viks
Published in: Frontiers in Genetics, Issue 11, 2020, ISSN 1664-8021
Publisher: Frontiers Media
DOI: 10.3389/fgene.2020.00402

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