Proteolytic processing in plant stress signal transduction and responses to abiotic stress and pathogen attack

MANTI: Automated Annotation of Protein N-Termini for Rapid Interpretation of N-Terminome Data Sets

Author(s): Fatih Demir, Jayachandran N. Kizhakkedathu, Markus M. Rinschen, Pitter F. Huesgen
Published in: Analytical Chemistry, Issue 93/13, 2021, Page(s) 5596-5605, ISSN 0003-2700
Publisher: American Chemical Society
DOI: 10.1021/acs.analchem.1c00310

Abundance of metalloprotease FtsH12 modulates chloroplast development in Arabidopsis thaliana

Author(s): Kati Mielke, Raik Wagner, Laxmi S Mishra, Fatih Demir, Andreas Perrar, Pitter F Huesgen, Christiane Funk
Published in: Journal of Experimental Botany, Issue online early, 2020, Page(s) 1-18, ISSN 0022-0957
Publisher: Oxford University Press
DOI: 10.1093/jxb/eraa550

Cutting the line: manipulation of plant immunity by bacterial type III effector proteases

Author(s): Brian C Mooney, Melissa Mantz, Emmanuelle Graciet, Pitter F Huesgen
Published in: Journal of Experimental Botany, Issue 72/9, 2021, Page(s) 3395-3409, ISSN 0022-0957
Publisher: Oxford University Press
DOI: 10.1093/jxb/erab095

N-Degradomic Analysis Reveals a Proteolytic Network Processing the Podocyte Cytoskeleton

Author(s): Markus M. Rinschen, Ann-Kathrin Hoppe, Florian Grahammer, Martin Kann, Linus A. Völker, Eva-Maria Schurek, Julie Binz, Martin Höhne, Fatih Demir, Milena Malisic, Tobias B. Huber, Christine Kurschat, Jayachandran N. Kizhakkedathu, Bernhard Schermer, Pitter F. Huesgen, Thomas Benzing
Published in: Journal of the American Society of Nephrology, Issue 28/10, 2017, Page(s) 2867-2878, ISSN 1046-6673
Publisher: Lippincott Williams & Wilkins Ltd.
DOI: 10.1681/ASN.2016101119

Quantitative proteomics in plant protease substrate identification

Author(s): Fatih Demir, Stefan Niedermaier, Joji Grace Villamor, Pitter Florian Huesgen
Published in: New Phytologist, Issue 218/3, 2018, Page(s) 936-943, ISSN 0028-646X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/nph.14587

Positional proteomics for identification of secreted proteoforms released by site-specific processing of membrane proteins

Author(s): Stefan Niedermaier, Pitter F. Huesgen
Published in: Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, Issue 1867, 2018, ISSN 1570-9639
Publisher: Elsevier BV
DOI: 10.1016/j.bbapap.2018.09.004

New beginnings and new ends – Methods for large-scale characterization of protein termini and their use in plant biology

Author(s): Andreas Perrar, Nico Dissmeyer, Pitter F Huesgen
Published in: Journal of Experimental Botany, Issue 70, 2019, Page(s) 2021-2038, ISSN 0022-0957
Publisher: Oxford University Press
DOI: 10.1093/jxb/erz104

A fungal substrate mimicking molecule suppresses plant immunity via an inter-kingdom conserved motif

Author(s): Johana C. Misas Villamil, André N. Mueller, Fatih Demir, Ute Meyer, Bilal Ökmen, Jan Schulze Hüynck, Marlen Breuer, Helen Dauben, Joe Win, Pitter F. Huesgen, Gunther Doehlemann
Published in: Nature Communications, Issue 10/1, 2019, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-019-09472-8

DEG10 contributes to mitochondrial proteostasis, root growth, and seed yield in Arabidopsis

Author(s): Catharina V Huber, Barbara D Jakobs, Laxmi S Mishra, Stefan Niedermaier, Marc Stift, Gudrun Winter, Iwona Adamska, Christiane Funk, Pitter F Huesgen, Dietmar Funck
Published in: Journal of Experimental Botany, Issue 70, 2019, Page(s) 5423-5436, ISSN 0022-0957
Publisher: Oxford University Press
DOI: 10.1093/jxb/erz294

Sensitive Determination of Proteolytic Proteoforms in Limited Microscale Proteome Samples

Author(s): Samuel S. H. Weng, Fatih Demir, Enes K. Ergin, Sabrina Dirnberger, Anuli Uzozie, Domenic Tuscher, Lorenz Nierves, Janice Tsui, Pitter F. Huesgen, Philipp F. Lange
Published in: Molecular & Cellular Proteomics, Issue 18/11, 2019, Page(s) 2335-2347, ISSN 1535-9476
Publisher: American Society for Biochemistry and Molecular Biology Inc.
DOI: 10.1074/mcp.TIR119.001560

Photoprotective Acclimation of the Arabidopsis thaliana Leaf Proteome to Fluctuating Light

Author(s): Stefan Niedermaier, Trang Schneider, Marc-Oliver Bahl, Shizue Matsubara, Pitter F. Huesgen
Published in: Frontiers in Genetics, Issue 11, 2020, ISSN 1664-8021
Publisher: Frontiers Media
DOI: 10.3389/fgene.2020.00154

ExteNDing Proteome Coverage with Legumain as a Highly Specific Digestion Protease

Author(s): Wai Tuck Soh, Fatih Demir, Elfriede Dall, Andreas Perrar, Sven O. Dahms, Maithreyan Kuppusamy, Hans Brandstetter, Pitter F. Huesgen
Published in: Analytical Chemistry, Issue 92/4, 2020, Page(s) 2961-2971, ISSN 0003-2700
Publisher: American Chemical Society
DOI: 10.1021/acs.analchem.9b03604

Structural and functional studies of Arabidopsis thaliana legumain beta reveal isoform specific mechanisms of activation and substrate recognition

Author(s): Elfriede Dall, Florian B. Zauner, Wai Tuck Soh, Fatih Demir, Sven O. Dahms, Chiara Cabrele, Pitter F. Huesgen, Hans Brandstetter
Published in: Journal of Biological Chemistry, Issue 295/37, 2020, Page(s) 13047-13064, ISSN 0021-9258
Publisher: American Society for Biochemistry and Molecular Biology Inc.
DOI: 10.1074/jbc.ra120.014478

Profiling of Protein N-Termini and Their Modifications in Complex Samples

Author(s): Fatih Demir, Stefan Niedermaier, Jayachandran N. Kizhakkedathu, Pitter F. Huesgen
Published in: Methods in Molecular Biology, Issue volume 1574, 2017, Page(s) 35-50, ISBN 978-1-4939-6850-3
Publisher: Springer New York
DOI: 10.1007/978-1-4939-6850-3_4

Das maßgeschneiderte Proteom: Proteinmodifikation durch Proteolyse

Author(s): Fatih Demir, Andreas Perrar, Pitter F. Huesgen
Published in: BIOspektrum, Issue 25/1, 2019, Page(s) 41-44, ISSN 0947-0867
Publisher: Spektrum Akademischer Verlag GmbH
DOI: 10.1007/s12268-019-1003-4

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