Livrables
Clearence of Ethics issues according to the Ethics requirements
Scientific publications reportReport on scientific publications from WP1 – WP5
Final project reportReport on project activities and results
Dissemination and outreach planTargeted plan for dissemination and outreach activity As suggested in the proposal UC will lead the deliverable
draft period reportdraft first Periodic report to be delivered before the MTR
Final Dissemination reportAnnual report of dissemination activities As suggested in the proposal UC will lead the deliverable
Progress reportFirst progress report
Report on workshopsTraining description and evaluation As suggested in the proposal TCD will lead the deliverable
ATLANTIS project HiPOP websiteReport on content of the EU-USA ATLANTIS project portal
Report on conferenceReport on scientific results with emphasis on the project outcomes As suggested in the proposal UC will lead the deliverable
Report on potential exascale architecturesEvaluation of HPC architectures for exascale using lattice QCD kernels As suggested in the proposal JUELICH will lead the deliverable
Year-3 Dissemination reportAnnual report of dissemination activities As suggested in the proposal UC will lead the deliverable
Protein/DNA interactions explored by molecular simulationInvestigation of the effect of in vivo post-translational modifications (PTMs) on the interaction between platinated DNA- formed in cells undergoing anticancer treatment of cisplatin – and its target protein HMGB1.
Algorithms for suspension hydrodynamicsReport on pseudo-spectral and Lattice Boltzmann algorithms for suspension hydrodynamics
Year-1 Dissemination reportAnnual report of dissemination activities As suggested in the proposal UC will lead the deliverable
Lattice Boltzmann AlgorithmsReport on the effect of thermal fluctuations in multiphase fluids
Turbulence models in LBMReport on the adaptation of LBM codes to model turbulence using LE/testing on accelerators
Report on HPC architecture and technology trendsMarket analysis of trends for HPC architectures and technologies As suggested in the proposal JUELICH will lead the deliverable
Continuum model for population geneticsDescription of the process of development a hybrid approach that, while retaining the features of the continuum Fisher approach, it can allow to quantitatively study genetics evolution.
Report on shared coursesAssessment of educational effectiveness node-shared courses As suggested in the proposal TCD will lead the deliverable
Hadron spectrum and resonancesPublications on Hadron spectrum and resonance parameters As suggested in the proposal TCD will lead the deliverable
Year-2 Dissemination reportAnnual report of dissemination activities As suggested in the proposal UC will lead the deliverable
String Breaking from Lattice QCD with up, down and strange sea quarksDescription of testing of the code, application for computer time at ICHEC in Ireland, and analysis of string breaking.
Hybrid Monte-Carlo algorithmsReport on the parallelized and optimized algorithms to explore rare events in hydrodynamics
Report on Ph.D. awardsList of Ph.D. awarded thesis
Career Development Plan (CDP)CDP on the career path of each ESR
Implementation of adaptive resolution schemes and AMBER-based force
Supervisory boardSupervisory board for the Network
Domain decomposition (DD) algorithmPrototype asynchronous algebraic DD for preconditioning communication-avoiding Krylov-subspace methods
Deflation algorithmPrototype deflation-based method incorporating multilevel representation of the deflation subspace
Nucleon structure and BSM physicsResults and publication on nucleon and BSM observables
Quantum Mechanics (QM)/Molecular mechanics (MM) codesOptimization of selected QM/MM codes for scaling on BlueGene/Q
Time-like form factorsPreliminary results on time-like form factors As suggested in the proposal DESY will lead the deliverable
New approaches for disconnected diagramsPublication of results of disconnected graphs for nucleon structure As suggested in the proposal DESY will lead the deliverable
QCD algorithmsScalability of deflation-based methods in large-scale QCD computations
Kick-off meeting and SB meeting at CyIReport on the event. Stakeholder meeting for project kick-off
Multigrid algorithmsPrototype asynchronous algebraic multigrid for preconditioning communication-avoiding Krylov-subspace methods
Report on LBM codesPublication on improvement of LBM
Multilevel methodsPublication on convergence behaviour of asynchronous multilevel methods
Project training portalAssembly of training material for the portal maintained at CyI
GPCRs and SMIsPublication of mosquito GPCRs and SMIs As suggested in the proposal ICL will lead the deliverable
Project dissemination materialShowcase for students and the general public As suggested in the proposal UC will lead the deliverable
MTRMidterm review meeting
Further development of QM/MM codes for exascaleDevelopment of new parallel strategies for multiscale QM/MM molecular dynamics algorithms suitable for exascale machines. As suggested in the proposal IBM will lead the deliverable
EJD project website
Publications
Auteurs:
Calore, E., Gabbana, A., Kraus, J., Schifano, S. F. and Tripiccione, R.
Publié dans:
Concurrency and Computation: Practice and Experience, Numéro 28, 2016, Page(s) 3485–3502, ISSN 1532-0626
Éditeur:
John Wiley & Sons Inc.
DOI:
10.1002/cpe.3862
Auteurs:
Alexandrou, C., Bacchio, S., Finkenrath, J., Frommer, A., Kahl, K., and Rottmann, M.
Publié dans:
Physical Review D, Numéro 94, 2016, Page(s) 114509, ISSN 2470-0010
Éditeur:
American Physical Society
DOI:
10.1103/physrevd.94.114509
Auteurs:
Calore, E., Gabbana, A., Kraus, J., Pellegrini, E., Schifano, S. and Tripiccione, R.
Publié dans:
Parallel Computing, Numéro 58, 2016, Page(s) 1 - 24, ISSN 0167-8191
Éditeur:
Elsevier BV
DOI:
10.1016/j.parco.2016.08.005
Auteurs:
Liu, L., Bacchio, S., Dimopoulos, P., Finkenrath, J., Frezzotti, R., Helmes, C., Jost, C., Knippschild, B., Kostrzewa, B., Liu, H., Ottnad, K., Petschlies, M., Urbach, C. & Werner, M.
Publié dans:
Physical Review D, Numéro 10.1103/PhysRevD.96.054516, 2017, ISSN 1824-8039
Éditeur:
American Physical Society
Auteurs:
Constantia Alexandrou, Krzysztof Cichy, Martha Constantinou, Kyriakos Hadjiyiannakou, Karl Jansen, Aurora Scapellato, Fernanda Steffens
Publié dans:
Physical Review D, Numéro 99/11, 2019, ISSN 2470-0010
Éditeur:
American Physical Society
DOI:
10.1103/PhysRevD.99.114504
Auteurs:
C. Alexandrou, S. Bacchio, P. Dimopoulos, J. Finkenrath, R. Frezzotti, K. Jansen, B. Kostrzewa, M. Mangin-Brinet, F. Sanfilippo, S. Simula, C. Urbach, U. Wenger
Publié dans:
Physical Review D, Numéro 97/1, 2018, ISSN 2470-0010
Éditeur:
American Physical Society
DOI:
10.1103/PhysRevD.97.014508
Auteurs:
Salvatore Calì, Francesco Knechtli, Tomasz Korzec, Haralambos Panagopoulos
Publié dans:
EPJ Web of Conferences, Numéro 175, 2018, Page(s) 10002, ISSN 2100-014X
Éditeur:
EDP Sciences
DOI:
10.1051/epjconf/201817510002
Auteurs:
Enrico Calore, Alessandro Gabbana, Sebastiano Schifano, Raffaele Tripiccione
Publié dans:
Journal of Low Power Electronics and Applications, Numéro 8/2, 2018, Page(s) 18, ISSN 2079-9268
Éditeur:
Multidisciplinary Digital Publishing Institute (MDPI)
DOI:
10.3390/jlpea8020018
Auteurs:
Constantia Alexandrou, Simone Bacchio, Krzysztof Cichy, Martha Constantinou, Kyriakos Hadjiyiannakou, Karl Jansen, Giannis Koutsou, Aurora Scapellato, Fernanda Steffens
Publié dans:
EPJ Web of Conferences, Numéro 175, 2018, Page(s) 14008, ISSN 2100-014X
Éditeur:
EDP Sciences
DOI:
10.1051/epjconf/201817514008
Auteurs:
Claudio Bonati, Salvatore Calì, Massimo D’Elia, Michele Mesiti, Francesco Negro, Andrea Rucci, Francesco Sanfilippo
Publié dans:
Physical Review D, Numéro 98/5, 2018, ISSN 2470-0010
Éditeur:
American Physical Society
DOI:
10.1103/PhysRevD.98.054501
Auteurs:
Constantia Alexandrou, Krzysztof Cichy, Martha Constantinou, Kyriakos Hadjiyiannakou, Karl Jansen, Haralambos Panagopoulos, Aurora Scapellato, Fernanda Steffens
Publié dans:
EPJ Web of Conferences, Numéro 175, 2018, Page(s) 06021, ISSN 2100-014X
Éditeur:
EDP Sciences
DOI:
10.1051/epjconf/201817506021
Auteurs:
Constantia Alexandrou, Simone Bacchio, Panagiotis Charalambous, Petros Dimopoulos, Jacob Finkenrath, Roberto Frezzotti, Kyriakos Hadjiyiannakou, Karl Jansen, Giannis Koutsou, Bartosz Kostrzewa, Mariane Mangin-Brinet, Giancarlo Rossi, Silvano Simula, Carsten Urbach
Publié dans:
Physical Review D, Numéro 98/5, 2018, ISSN 2470-0010
Éditeur:
American Physical Society
DOI:
10.1103/PhysRevD.98.054518
Auteurs:
Constantia Alexandrou, Krzysztof Cichy, Martha Constantinou, Karl Jansen, Aurora Scapellato, Fernanda Steffens
Publié dans:
Physical Review D, Numéro 98/9, 2018, ISSN 2470-0010
Éditeur:
American Physical Sciences
DOI:
10.1103/PhysRevD.98.091503
Auteurs:
G. Margazoglou, L. Biferale, R. Grauer, K. Jansen, D. Mesterházy, T. Rosenow, R. Tripiccione
Publié dans:
Physical Review E, Numéro 99/5, 2019, ISSN 2470-0045
Éditeur:
American Physical Society
DOI:
10.1103/physreve.99.053303
Auteurs:
Simone Bacchio, Constantia Alexandrou, Jacob Finkerath
Publié dans:
EPJ Web of Conferences, Numéro 175, 2018, Page(s) 02002, ISSN 2100-014X
Éditeur:
EDP Sciences
DOI:
10.1051/epjconf/201817502002
Auteurs:
E Calore, A Gabbana, SF Schifano, R Tripiccione
Publié dans:
The International Journal of High Performance Computing Applications, Numéro 33/1, 2017, Page(s) 124-139, ISSN 1094-3420
Éditeur:
SAGE Publications
DOI:
10.1177/1094342017703771
Auteurs:
X. Xue, M. Sbragaglia, L. Biferale, F. Toschi
Publié dans:
Physical Review E, Numéro 98/1, 2018, ISSN 2470-0045
Éditeur:
American Physical Society
DOI:
10.1103/PhysRevE.98.012802
Auteurs:
Constantia Alexandrou, Luka Leskovec, Stefan Meinel, John Negele, Srijit Paul, Marcus Petschlies, Andrew Pochinsky, Gumaro Rendon, Sergey Syritsyn
Publié dans:
Physical Review D, Numéro 98/7, 2018, ISSN 2470-0010
Éditeur:
American Physical Society
DOI:
10.1103/PhysRevD.98.074502
Auteurs:
Calore, E.; Gabbana, A.; Schifano, S. F.; Tripiccione, R.
Publié dans:
Journal of Low Power Electronics and Applications, Numéro 7, 2018, ISSN 2079-9268
Éditeur:
Multidisciplinary Digital Publishing Institute (MDPI)
DOI:
10.3233/978-1-61499-843-3-733
Auteurs:
Jacob Finkenrath, Constantia Alexandrou, Simone Bacchio, Panagiotis Charalambous, Petros Dimopoulos, Roberto Frezzotti, Karl Jansen, Bartosz Kostrzewa, Giancarlo Rossi, Carsten Urbach
Publié dans:
EPJ Web of Conferences, Numéro 175, 2018, Page(s) 02003, ISSN 2100-014X
Éditeur:
EDP Sciences
DOI:
10.1051/epjconf/201817502003
Auteurs:
John Bulava, Ben Hörz, Francesco Knechtli, Vanessa Koch, Graham Moir, Colin Morningstar, Mike Peardon
Publié dans:
Physics Letters B, Numéro 793, 2019, Page(s) 493-498, ISSN 0370-2693
Éditeur:
Elsevier BV
DOI:
10.1016/j.physletb.2019.05.018
Auteurs:
A. Gabbana, M. Mendoza, S. Succi, R. Tripiccione
Publié dans:
Physical Review E, Numéro 96/2, 2017, ISSN 2470-0045
Éditeur:
American Physical Society
DOI:
10.1103/PhysRevE.96.023305
Auteurs:
Lasse Ebener, Georgios Margazoglou, Jan Friedrich, Luca Biferale, Rainer Grauer
Publié dans:
Chaos: An Interdisciplinary Journal of Nonlinear Science, Numéro 29/6, 2019, Page(s) 063102, ISSN 1054-1500
Éditeur:
American Institute of Physics
DOI:
10.1063/1.5085119
Auteurs:
A. Gabbana, M. Mendoza, S. Succi, R. Tripiccione
Publié dans:
Computers & Fluids, Numéro 172, 2018, Page(s) 644-650, ISSN 0045-7930
Éditeur:
Pergamon Press Ltd.
DOI:
10.1016/j.compfluid.2018.02.020
Auteurs:
A. Gabbana, D. Simeoni, S. Succi, R. Tripiccione
Publié dans:
Physical Review E, Numéro 99/5, 2019, ISSN 2470-0045
Éditeur:
American Physical Society
DOI:
10.1103/PhysRevE.99.052126
Auteurs:
F. Milan, M. Sbragaglia, L. Biferale, F. Toschi
Publié dans:
The European Physical Journal E, Numéro 41/1, 2018, ISSN 1292-8941
Éditeur:
Springer Verlag
DOI:
10.1140/epje/i2018-11613-0
Auteurs:
A. Gabbana, M. Polini, S. Succi, R. Tripiccione, F. M. D. Pellegrino
Publié dans:
Physical Review Letters, Numéro 121/23, 2018, ISSN 0031-9007
Éditeur:
American Physical Society
DOI:
10.1103/PhysRevLett.121.236602
Auteurs:
Claudio Bonati, Salvatore Calì, Massimo D’Elia, Michele Mesiti, Francesco Negro, Andrea Rucci, Francesco Sanfilippo
Publié dans:
EPJ Web of Conferences, Numéro 175, 2018, Page(s) 12008, ISSN 2100-014X
Éditeur:
EDP Sciences
DOI:
10.1051/epjconf/201817512008
Auteurs:
Constantia Alexandrou, Simone Bacchio, Jacob Finkenrath
Publié dans:
Computer Physics Communications, Numéro 236, 2019, Page(s) 51-64, ISSN 0010-4655
Éditeur:
Elsevier BV
DOI:
10.1016/j.cpc.2018.10.013
Auteurs:
Constantia Alexandrou, Krzysztof Cichy, Martha Constantinou, Karl Jansen, Aurora Scapellato, Fernanda Steffens
Publié dans:
Physical Review Letters, Numéro 121/11, 2018, ISSN 0031-9007
Éditeur:
American Physical Society
DOI:
10.1103/PhysRevLett.121.112001
Auteurs:
Jan Friedrich, Georgios Margazoglou, Luca Biferale, Rainer Grauer
Publié dans:
Physical Review E, Numéro 98/2, 2018, ISSN 2470-0045
Éditeur:
American Physical Society
DOI:
10.1103/PhysRevE.98.023104
Auteurs:
Thomas Tarenzi, Vania Calandrini, Raffaello Potestio, Paolo Carloni
Publié dans:
Journal of Chemical Theory and Computation, Numéro 15/3, 2019, Page(s) 2101-2109, ISSN 1549-9618
Éditeur:
American Chemical Society
DOI:
10.1021/acs.jctc.9b00040
Auteurs:
Thomas Tarenzi, Vania Calandrini, Raffaello Potestio, Alejandro Giorgetti, Paolo Carloni
Publié dans:
Journal of Chemical Theory and Computation, Numéro 13/11, 2017, Page(s) 5647-5657, ISSN 1549-9618
Éditeur:
American Chemical Society
DOI:
10.1021/acs.jctc.7b00508
Auteurs:
Enrico Calore, Alessandro Gabbana, Sebastiano Fabio Schifano, Raffaele Tripiccione
Publié dans:
Concurrency and Computation: Practice and Experience, 2017, Page(s) e4143, ISSN 1532-0626
Éditeur:
John Wiley & Sons Inc.
DOI:
10.1002/cpe.4143
Auteurs:
A. Gabbana, M. Mendoza, S. Succi, R. Tripiccione
Publié dans:
Physical Review E, Numéro 95/5, 2017, ISSN 2470-0045
Éditeur:
American Physical Society
DOI:
10.1103/PhysRevE.95.053304
Auteurs:
Leskovec, L., Alexandrou, C., Koutsou, G., Meinel, S., Negele, J. W., Paul, S., Petschlies, M.,
Pochinsky, A., Rendon, G. and Syritsyn, S.
Publié dans:
Proceedings of Science (LATTICE2016), 2016, Page(s) 159, ISSN 1824-8039
Éditeur:
SISA (Scuola Internazionale Superiore di Studi Avanzati)
Auteurs:
Bacchio, S., Alexandrou, C., Finkenrath, J., Frommer, A., Kahl, K. and Rottmann, M.
Publié dans:
Proceedings of Science (LATTICE2016), 2016, Page(s) 259, ISSN 1824-8039
Éditeur:
SISA (Scuola Internazionale Superiore di Studi Avanzati)
Auteurs:
Tomasz Korzec, Francesco Knechtli, Salvatore Cali, Björn Leder, Graham Moir
Publié dans:
Proceedings of 34th annual International Symposium on Lattice Field Theory — PoS(LATTICE2016), 2017, Page(s) 126
Éditeur:
Sissa Medialab
DOI:
10.22323/1.256.0126
Auteurs:
Enrico Calore, Alessandro Gabbana, Sebastiano Fabio Schifano, Raffaele Tripiccione
Publié dans:
Parallel Processing and Applied Mathematics - 12th International Conference, PPAM 2017, Lublin, Poland, September 10-13, 2017, Revised Selected Papers, Part I, Numéro 10777, 2018, Page(s) 519-530, ISBN 978-3-319-78023-8
Éditeur:
Springer International Publishing
DOI:
10.1007/978-3-319-78024-5_45
Auteurs:
V. Koch, J. Bulava, B. Hörz, F. Knechtli, G. Moir, C. Morningstar and M. Peardon
Publié dans:
2018
Éditeur:
Cornell University
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