Publications Other (6) The interplay between developmental stage and environment determines the adaptive effect of a natural transposable element insertion Author(s): Miriam Merenciano, Josefa Gonzalez Published in: bioRxiv, 2022 Publisher: CSHL DOI: 10.1101/2022.02.09.479730 Basal and stress-induced expression changes consistent with water loss reduction explain desiccation tolerance of natural Drosophila melanogaster populations Author(s): Vivien Horváth, Sara Guirao-Rico, Judit Salces-Ortiz, Gabriel E. Rech, Llewellyn Green, Eugenio Aprea, Mirco Rodeghiero, Gianfranco Anfora, Josefa González Published in: 2022 Publisher: Cold Spring Harbour Laboratory DOI: 10.1101/2022.03.21.485105 Population-scale long-read sequencing uncovers transposable elements contributing to gene expression variation and associated with adaptive signatures in Drosophila melanogaster Author(s): Gabriel E. Rech, Santiago Radío, Sara Guirao-Rico, Laura Aguilera, Vivien Horvath, Llewellyn Green, Hannah Lindstadt, Véronique Jamilloux, Hadi Quesneville, Josefa González Published in: bioRxiv, 2021 Publisher: CSHL DOI: 10.1101/2021.10.08.463646 Genomic analysis of European Drosophila populations reveals longitudinal structure and continent-wide selection Author(s): Martin Kapun, Maite Garazi Barron Aduriz, Fabian Staubach, Jorge Vieira, Darren Obbard, Clement Goubert, Omar Rota Stabelli, Maaria Kankare, Annabelle Haudry, R. Axel W. Wiberg, Lena Waidele, Iryna Kozeretska, Elena Pasyukova, Volker Loeschcke, Marta Pascual, Cristina P Vieira, Svitlana Serga, Catherine Montchamp-Moreau, Jessica Abbott, Patricia Gibert, Damiano Porcelli, Nico Published in: bioRxiv, 2018 Publisher: Cold Spring Harbor Laboratory DOI: 10.1101/313759 Broad geographic sampling reveals predictable and pervasive seasonal adaptation in Drosophila Author(s): Heather Machado, Alan O. Bergland, Ryan Taylor, Susanne Tilk, Emily Behrman, Kelly Dyer, Daniel Fabian, Thomas Flatt, Josefa Gonzalez, Talia Karasov, Iryna Kozeretska, Brian P. Lazzaro, Thomas Merritt, John Pool, Katherine O'Brien, Subhash Rajpurohit, Paula Roy, Stephen Schaeffer, Svitlana Serga, Paul Schmidt, Dmitri Petrov Published in: bioRxiv, 2018 Publisher: Cold Spring Harbor Laboratory DOI: 10.1101/337543 Natural variation in copper tolerance in Drosophila melanogaster is shaped by transcriptional and physiological changes in the gut Author(s): Llewellyn Green, Santiago Radio, Gabriel E. Rech, Judit Salces-Ortiz, Josefa González Published in: bioRxiv, 2021 Publisher: CSHL DOI: 10.1101/2021.07.12.452058 Thesis dissertations (3) Deciphering the molecular and phenotypic effects of a Drosophila melanogaster transposable element located in a unique insertional cluster Author(s): Miriam Merenciano Published in: 2020 Publisher: Universitat de Barcelona Identification of environmental variables in Drosophila melanogaster natural populations Author(s): María Bogaerts Márquez Published in: 2021 Publisher: Universitat Pompeu Fabra Unravelling the role of transposable elements in the eukaryotic stress response Author(s): Vivien Horvath Published in: 2020 Publisher: Universitat Pompeu Fabra Peer reviewed articles (23) T-lex3: an accurate tool to genotype and estimate population frequencies of transposable elements using the latest short-read whole genome sequencing data Author(s): María Bogaerts-Márquez, Maite G Barrón, Anna-Sophie Fiston-Lavier, Pol Vendrell-Mir, Raúl Castanera, Josep M Casacuberta, Josefa González Published in: Bioinformatics, 2019, ISSN 1367-4803 Publisher: Oxford University Press DOI: 10.1093/bioinformatics/btz727 Temperature, rainfall and wind variables underlie environmental adaptation in natural populations of Drosophila melanogaster Author(s): María Bogaerts‐Márquez, Sara Guirao‐Rico, Mathieu Gautier, Josefa González Published in: Molecular Ecology, Issue 30/4, 2021, Page(s) 938-954, ISSN 0962-1083 Publisher: Blackwell Publishing Inc. DOI: 10.1111/mec.15783 A benchmark of transposon insertion detection tools using real data Author(s): Pol Vendrell-Mir, Fabio Barteri, Miriam Merenciano, Josefa González, Josep M. Casacuberta, Raúl Castanera Published in: Mobile DNA, Issue 10/1, 2019, ISSN 1759-8753 Publisher: BioMed Central DOI: 10.1186/s13100-019-0197-9 Benchmarking the performance of Pool-seq SNP callers using simulated and real sequencing data Author(s): Sara Guirao-Rico, Josefa González Published in: Molecular Ecology Resources, 2021, ISSN 1755-0998 Publisher: Wiley Online DOI: 10.1111/1755-0998.13343 Diverse families of transposable elements affect the transcriptional regulation of stress-response genes in Drosophila melanogaster Author(s): José Luis Villanueva-Cañas, Vivien Horvath, Laura Aguilera, Josefa González Published in: Nucleic Acids Research, 2019, ISSN 0305-1048 Publisher: Oxford University Press DOI: 10.1093/nar/gkz490 Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA Viruses Author(s): Martin Kapun, Maite G Barrón, Fabian Staubach, Darren J Obbard, R Axel W Wiberg, Jorge Vieira, Clément Goubert, Omar Rota-Stabelli, Maaria Kankare, María Bogaerts-Márquez, Annabelle Haudry, Lena Waidele, Iryna Kozeretska, Elena G Pasyukova, Volker Loeschcke, Marta Pascual, Cristina P Vieira, Svitlana Serga, Catherine Montchamp-Moreau, Jessica Abbott, Patricia Gibert, Damiano Porcelli, Nico Pos Published in: Molecular Biology and Evolution, Issue 37/9, 2020, Page(s) 2661-2678, ISSN 0737-4038 Publisher: Oxford University Press DOI: 10.1093/molbev/msaa120 Drosophila Evolution over Space and Time (DEST) - A New Population Genomics Resource Author(s): Martin Kapun, Joaquin C B Nunez, María Bogaerts-Márquez, Jesús Murga-Moreno, Margot Paris, Joseph Outten, Marta Coronado-Zamora, Courtney Tern, Omar Rota-Stabelli, Maria P García Guerreiro, Sònia Casillas, Dorcas J Orengo, Eva Puerma, Maaria Kankare, Lino Ometto, Volker Loeschcke, Banu S Onder, Jessica K Abbott, Stephen W Schaeffer, Subhash Rajpurohit, Emily L Behrman, Mads Published in: Molecular Biology and Evolution, 2021, ISSN 1537-1719 Publisher: Oxford University Press DOI: 10.1093/molbev/msab259 The discovery, distribution and diversity of DNA viruses associated with Drosophila melanogaster in Europe Author(s): Megan A. Wallace; Kelsey A. Coffman; Clément Gilbert; Sanjana Ravindran; Gregory F. Albery; Jessica K. Abbott; Eliza Argyridou; Paola Bellosta; Paola Bellosta; Andrea J. Betancourt; Hervé Colinet; Katarina Eric; Amanda Glaser-Schmitt; Sonja Grath; Mihailo Jelić; Maaria Kankare; Iryna Kozeretska; Volker Loeschcke; Catherine Montchamp-Moreau; Lino Ometto; Banu Sebnem Onder; Dorcas J. Orengo; John Published in: Virus Evolution, Issue 8, 2021, ISSN 2057-1577 Publisher: Oxford University Press DOI: 10.1093/ve/veab031 Identifying chromosomal subpopulations based on their recombination histories advances the study of the genetic basis of phenotypic traits. Author(s): Carlos Ruiz-Arenas; Alejandro Cáceres; Marcos Lamelas López; Dolors Pelegrí-Sisó; Josefa González; Juan R. González Published in: Genome Research, Issue 5, 2020, ISSN 1549-5469 Publisher: CSHLP DOI: 10.1101/gr.258301.119 Revisiting the Relationship between Transposable Elements and the Eukaryotic Stress Response Author(s): Vivien Horváth, Miriam Merenciano, Josefa González Published in: Trends in Genetics, Issue 33/11, 2017, Page(s) 832-841, ISSN 0168-9525 Publisher: Elsevier BV DOI: 10.1016/j.tig.2017.08.007 Beyond SNPs: how to detect selection on transposable element insertions Author(s): José Luis Villanueva-Cañas, Gabriel E. Rech, Maria Angeles Rodriguez de Cara, Josefa González Published in: Methods in Ecology and Evolution, Issue 8/6, 2017, Page(s) 728-737, ISSN 2041-210X Publisher: John Wiley and Sons Inc. DOI: 10.1111/2041-210X.12781 Stress affects the epigenetic marks added by natural transposable element insertions in Drosophila melanogaster Author(s): Lain Guio, Cristina Vieira, Josefa González Published in: Scientific Reports, Issue 8/1, 2018, ISSN 2045-2322 Publisher: Nature Publishing Group DOI: 10.1038/s41598-018-30491-w Genome-wide patterns of local adaptation in Western European Drosophila melanogaster natural populations Author(s): Lidia Mateo, Gabriel E. Rech, Josefa González Published in: Scientific Reports, Issue 8/1, 2018, ISSN 2045-2322 Publisher: Nature Publishing Group DOI: 10.1038/s41598-018-34267-0 Evolutionary insights from large scale resequencing datasets in Drosophila melanogaster Author(s): Sara Guirao-Rico, Josefa González Published in: Current Opinion in Insect Science, Issue 31, 2019, Page(s) 70-76, ISSN 2214-5745 Publisher: Elsevier BV DOI: 10.1016/j.cois.2018.11.002 Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila Author(s): Gabriel E. Rech, María Bogaerts-Márquez, Maite G. Barrón, Miriam Merenciano, José Luis Villanueva-Cañas, Vivien Horváth, Anna-Sophie Fiston-Lavier, Isabelle Luyten, Sandeep Venkataram, Hadi Quesneville, Dmitri A. Petrov, Josefa González Published in: PLOS Genetics, Issue 15/2, 2019, Page(s) e1007900, ISSN 1553-7404 Publisher: Public Library of Sciences DOI: 10.1371/journal.pgen.1007900 Population-specific dynamics and selection patterns of transposable element insertions in European natural populations Author(s): Emmanuelle Lerat, Clément Goubert, Sara Guirao-Rico, Miriam Merenciano, Anne-Béatrice Dufour, Cristina Vieira, Josefa González Published in: Molecular Ecology, 2019, ISSN 0962-1083 Publisher: Blackwell Publishing Inc. DOI: 10.1111/mec.14963 Transposable Elements Contribute to the Adaptation of Arabidopsis thaliana Author(s): Zi-Wen Li, Xing-Hui Hou, Jia-Fu Chen, Yong-Chao Xu, Qiong Wu, Josefa González, Ya-Long Guo Published in: Genome Biology and Evolution, Issue 10/8, 2018, Page(s) 2140-2150, ISSN 1759-6653 Publisher: Oxford University Press DOI: 10.1093/gbe/evy171 A unique cluster of roo insertions in the promoter region of a stress response gene in Drosophila melanogaster Author(s): Miriam Merenciano, Camillo Iacometti, Josefa González Published in: Mobile DNA, Issue 10/1, 2019, ISSN 1759-8753 Publisher: BioMed Central DOI: 10.1186/s13100-019-0152-9 Transposable elements contribute to the genomic response to insecticides in Drosophila melanogaster Author(s): Judit Salces-Ortiz, Carlos Vargas-Chavez, Lain Guio, Gabriel E. Rech, Josefa González Published in: Philosophical Transactions of the Royal Society B: Biological Sciences, Issue 375/1795, 2020, Page(s) 20190341, ISSN 0962-8436 Publisher: Royal Society of London DOI: 10.1098/rstb.2019.0341 TE Hub: A community-oriented space for sharing and connecting tools, data, resources, and methods for transposable element annotation. Author(s): The TE Hub Consortium; Tyler A. Elliott; Tony Heitkam; Robert Hubley; Hadi Quesneville; Alexander Suh; Travis J. Wheeler Published in: Mobile DNA, Issue 7, 2021, ISSN 1759-8753 Publisher: BioMed Central DOI: 10.1186/s13100-021-00244-0 Regulatory regions in natural transposable element insertions drive interindividual differences in response to immune challenges in Drosophila Author(s): Anna Ullastres, Miriam Merenciano, Josefa González Published in: Genome Biology, 2021, ISSN 1465-6906 Publisher: Biomed Central DOI: 10.1186/s13059-021-02471-3 Broad geographic sampling reveals the shared basis and environmental correlates of seasonal adaptation in Drosophila . Author(s): Heather E. Machado; Alan O. Bergland; Ryan W. Taylor; Susanne Tilk; Emily L. Behrman; Kelly A. Dyer; Daniel K. Fabian; Thomas Flatt; Josefa González; Talia L. Karasov; Bernard Y. Kim; Iryna Kozeretska; Brian P. Lazzaro; Thomas J.S. Merritt; John E. Pool; Katherine R. O'Brien; Subhash Rajpurohit; Paula R. Roy; Stephen W. Schaeffer; Svitlana Serga; Paul S. Schmidt; Dmitri A. Petrov Published in: eLife, Issue 10, 2021, ISSN 2050-084X Publisher: eLife Sciences Publications DOI: 10.17863/cam.73315 Polymorphic Inversions Underlie the Shared Genetic Susceptibility of Obesity-Related Diseases Author(s): Juan R. González; Carlos Ruiz-Arenas; Alejandro Cáceres; Ignasi Moran; Marcos López-Sánchez; Lorena Alonso; Ignacio Tolosana; Marta Guindo-Martínez; Josep M. Mercader; Tõnu Esko; David Torrents; David Torrents; Josefa González; Luis A. Pérez-Jurado Published in: The American Journal of Human Genetics, Issue 3, 2020, ISSN 0002-9297 Publisher: University of Chicago Press DOI: 10.1016/j.ajhg.2020.04.017 Book chapters (1) New Insights on the Evolution of Genome Content: Population Dynamics of Transposable Elements in Flies and Humans Author(s): Lain Guio, Josefa González Published in: Methods in Molecular Biology, 2019 Publisher: Springer Nature DOI: 10.1007/978-1-4939-9074-0_16 Searching for OpenAIRE data... 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