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Are HPV vaccines ‘evolution-proof’? Multilevel evolutionary ecology of human oncoviruses

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Treating symptomatic infections and the co-evolution of virulence and drug resistance

Author(s): Samuel Alizon
Published in: Peer Community Journal, 1, 2021, Page(s) e47, ISSN 2804-3871
Publisher: Centre Mersenne
DOI: 10.24072/pcjournal.38

Reconstructing contact network structure and cross-immunity patterns from multiple infection histories

Author(s): Christian Selinger, Samuel Alizon
Published in: PLOS Computational Biology, 17/9, 2021, Page(s) e1009375, ISSN 1553-7358
Publisher: PLoS
DOI: 10.1371/journal.pcbi.1009375

HPV cervical infections and serological status in vaccinated and unvaccinated women

Author(s): Carmen Lía Murall, Bastien Reyné, Christian Selinger, Claire Bernat, Vanina Boué, Sophie Grasset, Soraya Groc, Massilva Rahmoun, Noemi Bender, Marine Bonneau, Vincent Foulongne, Christelle Graf, Eric Picot, Marie-Christine Picot, Vincent Tribout, Tim Waterboer, Ignacio G Bravo, Jacques Reynes, Michel Segondy, Nathalie Boulle, Samuel Alizon
Published in: Vaccine, 38/51, 2020, Page(s) 8167-8174, ISSN 0264-410X
Publisher: Elsevier BV
DOI: 10.1016/j.vaccine.2020.10.078

Cytokine response following perturbation of the cervicovaginal milieu during HPV genital infection

Author(s): Christian Selinger, Massilva Rahmoun, Carmen Lia Murall, Claire Bernat, Vanina Boué, Marine Bonneau, Christelle Graf, Sophie Grasset, Soraya Groc, Jacques Reynes, Christophe Hirtz, Nathalie Jacobs, Samuel Alizon
Published in: Immunologic Research, 69/3, 2021, Page(s) 255-263, ISSN 0257-277X
Publisher: Humana Press, Inc.
DOI: 10.1007/s12026-021-09196-2

Reconciling Pasteur and Darwin to control infectious diseases

Author(s): Samuel Alizon, Pierre-Olivier Méthot
Published in: PLOS Biology, 16/1, 2018, Page(s) e2003815, ISSN 1545-7885
Publisher: Public Library of Science
DOI: 10.1371/journal.pbio.2003815

Why Human Papillomavirus Acute Infections Matter

Author(s): Samuel Alizon, Carmen Murall, Ignacio Bravo
Published in: Viruses, 9/12, 2017, Page(s) 293, ISSN 1999-4915
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v9100293

Coevolution of virulence and immunosuppression in multiple infections

Author(s): Tsukushi Kamiya, Nicole Mideo, Samuel Alizon
Published in: Journal of Evolutionary Biology, 31/7, 2018, Page(s) 995-1005, ISSN 1010-061X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/jeb.13280

Epithelial stratification shapes infection dynamics

Author(s): Carmen Lía Murall, Robert Jackson, Ingeborg Zehbe, Nathalie Boulle, Michel Segondy, Samuel Alizon
Published in: PLOS Computational Biology, 15/1, 2019, Page(s) e1006646, ISSN 1553-7358
Publisher: Public Library of Science
DOI: 10.1371/journal.pcbi.1006646

Modelling the evolution of viral oncogenesis

Author(s): Carmen Lía Murall, Samuel Alizon
Published in: Philosophical Transactions of the Royal Society B: Biological Sciences, 374/1773, 2019, Page(s) 20180302, ISSN 0962-8436
Publisher: Royal Society of London
DOI: 10.1098/rstb.2018.0302

Natural history, dynamics, and ecology of human papillomaviruses in genital infections of young women: protocol of the PAPCLEAR cohort study

Author(s): Carmen Lía Murall, Massilva Rahmoun, Christian Selinger, Monique Baldellou, Claire Bernat, Marine Bonneau, Vanina Boué, Mathilde Buisson, Guillaume Christophe, Giuseppe D’Auria, Florence De Taroni, Vincent Foulongne, Rémy Froissart, Christelle Graf, Sophie Grasset, Soraya Groc, Christophe Hirtz, Audrey Jaussent, Julie Lajoie, Frédérique Lorcy, Eric Picot, Marie-Christine Picot, Jacques Rave
Published in: BMJ Open, 9/6, 2019, Page(s) e025129, ISSN 2044-6055
Publisher: BMJ Publishing Group
DOI: 10.1136/bmjopen-2018-025129

Detecting within-host interactions from genotype combination prevalence data

Author(s): Samuel Alizon, Carmen Lía Murall, Emma Saulnier, Mircea T. Sofonea
Published in: Epidemics, 29, 2019, Page(s) 100349, ISSN 1755-4365
Publisher: Elsevier BV
DOI: 10.1016/j.epidem.2019.100349

Episome partitioning and symmetric cell divisions: Quantifying the role of random events in the persistence of HPV infections

Author(s): Thomas Beneteau, Christian Selinger, Mircea T. Sofonea, Samuel Alizon
Published in: PLOS Computational Biology, 17/9, 2021, Page(s) e1009352, ISSN 1553-7358
Publisher: PLoS
DOI: 10.1371/journal.pcbi.1009352

Invasions of Host-Associated Microbiome Networks

Author(s): C.L. Murall, J.L. Abbate, M. Puelma Touzel, E. Allen-Vercoe, S. Alizon, R. Froissart, K. McCann
Published in: Advances in Ecological Modeling, 57, 2017, Page(s) 201-281
Publisher: Elsevier
DOI: 10.1016/bs.aecr.2016.11.002