European Virus Archive goes global

Livrables

Documents, reports (34)

Guidelines for licensing and collaborating with industry

Guidelines for licensing and collaborating with industry.

Viral database

To include >2,500 qualified viral strains during the 4 years of the project following a yearly programme, in accordance with the following criteria: (i) ≥50% of QCS1 and QCS2 strains; <25% of QCS5 strains.

Protocols for inactivation of RG4 viruses

Validated protocols for inactivation of RG4 viruses

SOPs for virus storage

SOPs for sample stabilization under ambient temperatures and for long term storage Updates will be delivered at M36, M48.

Cell collection

To include > 10 new bat / rodent / interferon deficient cell lines.

Yearly Progress Report on Transfer of knowledge Activities

Yearly Progress Report on Transfer of knowledge Activities, including meetings proceedings and upcoming communication plan. Updates will be delivered at M24, M36, M48.

Protocols for viruses isolation

To propose standardised protocols allowing to increase the sensitivity of virus isolation Updates will be delivered at M24, M36, M48.

Report on ethical issues by EEAB

Report on ethical issues by EEAB. Updates will be delivered at M24, M36, M48.

List of protocols to rescue viruses

To produce a list of viruses and standardised protocol for rescuing replicative virus from inactivated samples. One update will be delivered at M48.

Specialized culture platform

To produce an automated culture platform operating in BSL3 environment for both mosquito and vertebrate cell lines.

Yearly communication and dissemination tools, including vulgarization material

Yearly communication and dissemination tools, including vulgarization material. Updates will be delivered at M24, M36, M48.

WP5 Final Report

WP2 Final Results

Protocol for virus FTA cards production

Protocol for virus FTA cards made available through EVA Portal

FTA cards assays protocols

Availability of assays through EVA

Cooperation agreements

Implementation of cooperation agreements with institutions from endemic areas to organize local staff training and material exchanges Updates will be delivered at M36, M48.

WP7 Final Results

WP8 final Results

WP8 final Results.

Assessment of the genome-sequencing quality

Procedure for the post-sequencing genome analysis and quality control Updates will be delivered at M36, M48.

Networking report

Report on the connections and formalized agreements between EVAg and other EU-funded projects and other Institutions for sharing viral strains and related products. Updates will be delivered at M36, M48

Inclusion of viruses in the EVAg DB arising from partnership with non-EVA European institutions

Inclusion of viruses in the EVAg DB arising from partnership with non-EVA European institutions. Updates will be delivered at M36, M48.

List of available vertebrate and invertebrate in vivo systems

List of available vertebrate and invertebrate in vivo systems and corresponding offered facility accesses for using these systems among the partners Updates will be delivered at M24, M36, M48.

Procedures to back-up collection of material

Backup global securing system of the collection Updates will be delivered at M36, M48.

WP4 Final Results

Catalogue of mouse models

Mouse model and GP model of SFTS and Oropuche virus.

Abstract of publication on nucleic acid extraction efficiencies

Peer reviewed manuscript on the relative nucleic acid extraction efficiencies from different specimen matrices (using synthetic RNA)

WP6 Final Results

WP6 Final Results.

Protocol for mosquito infection

Establishment of a passage-model for mosquito-borne viruses. One update will be delivered at M48.

List of specific viruses

Characterization of the viruses defined in Milestones “List of newly, in the course of the project, isolated viruses which will be characterized in terms of their ability to use various invertebrate hosts as vectors” at M24 in terms of their ability to use various invertebrate hosts as vectors One update will be delivered at M48.

Cost-effective NGS sequencing protocols

Providing cost-effective NGS sequencing protocols that fulfil abovementioned quality criteria for RNA virus sequencing

New protocols on NGS techniques

NGS innovative technical tools for sequencing viruses of the collection Updates will be delivered at M24, M36, M48.

WP3 Final Results

WP3 Final Results.

Procedures for viruses inactivation and viruses removal in biological samples

Producing procedures for (i) virus inactivation, (ii) virus removal, (iii) virus inactivation in fixed biological specimens, (iv) viral inactivation of clinical specimens, (v) gamma irradiation Updates will be delivered at M24, M36, M48.

Protocol for isolation of vector-borne viruses

Isolation attempts performed for the viruses defined in Milestone “List of vector-borne viruses identified as candidates for isolation attempts using in vivo invertebrate models” One update will be delivered at M48.

Websites, patent fillings, videos etc. (4)

Final Release of the EVAg compatible Software for sample management

Final Release of the EVAg compatible Software for sample management.

EVAg PORTAL user's private area available online

EVA PORTAL user's private area available online.

E Training material

E Training material. One update will be delivered at M48.

Updated version of the EVAg Website available online

Updated version of the EVAg Website available online.

Demonstrators, pilots, prototypes (2)

Online genome sequencing database-update

Periodically updated database of genome sequences and alignments of selected virus families accessible through public WEB-site Updates will be delivered at M24, M36, M48.

Specialized platform for recombinant proteins production

Operational platforms for proteins and antibodies production

Other (6)

Signature of agreements with related national structures of non-EU partners to organize local financial support

Signature of agreements with related national structures of non-EU partners to organize local financial support. Updates will be delivered at M24, M36, M48.

PCR SOPs updated catalogue

PCR SOPs and synthetic positive controls in catalogue. Day of outbreak + Week 3 max.

Database of epidemic viruses

Epidemic viruses are characterised and available via EVAg database. Day of outbreak + Week 8

Documented updated catalogue

SOPs with amended documentation and optional inhibition control in catalogue. Day of outbreak + Week 8

Antigens and protocols in EVAg catalogue

Antigens and protocols in EVAg catalogue. Day of outbreak + Week 12

Signature of agreements with CDC and other international health organization to formalize links with EVAg

Signature of agreements with CDC and other international health organization to formalize links with EVAg. Updates will be delivered at M24, M36, M48.

Publications

Peer reviewed articles (30)

Detection of Seoul virus in wild brown rats ( Rattus norvegicus ) from pig farms in Northern England

Auteurs: Ellen G Murphy, Nicola J Williams, Malcolm Bennett, Daisy Jennings, Julian Chantrey, Lorraine M McElhinney
Publié dans: Veterinary Record, 184/17, 2019, Page(s) 525-525, ISSN 0042-4900
Éditeur: British Veterinary Association
DOI: 10.1136/vr.105249

Hydroxychloroquine use against SARS-CoV-2 infection in non-human primates

Auteurs: Pauline Maisonnasse, Jérémie Guedj, Vanessa Contreras, Sylvie Behillil, Caroline Solas, Romain Marlin, Thibaut Naninck, Andres Pizzorno, Julien Lemaitre, Antonio Gonçalves, Nidhal Kahlaoui, Olivier Terrier, Raphael Ho Tsong Fang, Vincent Enouf, Nathalie Dereuddre-Bosquet, Angela Brisebarre, Franck Touret, Catherine Chapon, Bruno Hoen, Bruno Lina, Manuel Rosa Calatrava, Sylvie van der Werf, Xavi
Publié dans: Nature, 585/7826, 2020, Page(s) 584-587, ISSN 0028-0836
Éditeur: Nature Publishing Group
DOI: 10.1038/s41586-020-2558-4

International external quality assessment for SARS-CoV-2 molecular detection and survey on clinical laboratory preparedness during the COVID-19 pandemic, April/May 2020

Auteurs: Veerle Matheeussen, Victor M Corman, Oliver Donoso Mantke, Elaine McCulloch, Christine Lammens, Herman Goossens, Daniela Niemeyer, Paul S Wallace, Paul Klapper, Hubert GM Niesters, Christian Drosten, Margareta Ieven
Publié dans: Eurosurveillance, 25/27, 2020, ISSN 1560-7917
Éditeur: ECDC
DOI: 10.2807/1560-7917.es.2020.25.27.2001223

Comparative analyses of SARS-CoV-2 binding (IgG, IgM, IgA) and neutralizing antibodies from human serum samples

Auteurs: Livia Mazzini, Donata Martinuzzi, Inesa Hyseni, Linda Benincasa, Eleonora Molesti, Elisa Casa, Giulia Lapini, Pietro Piu, Claudia Maria Trombetta, Serena Marchi, Ilaria Razzano, Alessandro Manenti, Emanuele Montomoli
Publié dans: Journal of Immunological Methods, 489, 2021, Page(s) 112937, ISSN 0022-1759
Éditeur: Elsevier BV
DOI: 10.1016/j.jim.2020.112937

Comparison of commercial realtime reverse transcription PCR assays for the detection of SARS-CoV-2

Auteurs: Zsófia Iglói, Margareta leven, Zain Abdel-Karem Abou-Nouar, Babette Weller, Veerle Matheeussen, Jasmine Coppens, Marion Koopmans, Richard Molenkamp
Publié dans: Journal of Clinical Virology, 129, 2020, Page(s) 104510, ISSN 1386-6532
Éditeur: Elsevier BV
DOI: 10.1016/j.jcv.2020.104510

Molecular Epidemiology and Evolution of European Bat Lyssavirus 2

Auteurs: Lorraine McElhinney, Denise Marston, Emma Wise, Conrad Freuling, Hervé Bourhy, Reto Zanoni, Torfinn Moldal, Engbert Kooi, Antonie Neubauer-Juric, Tiina Nokireki, Thomas Müller, Anthony Fooks
Publié dans: International Journal of Molecular Sciences, 19/1, 2018, Page(s) 156, ISSN 1422-0067
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms19010156

Toscana, West Nile, Usutu and tick-borne encephalitis viruses: external quality assessment for molecular detection of emerging neurotropic viruses in Europe, 2017

Auteurs: Chantal Reusken, Cecile Baronti, Ramona Mögling, Anna Papa, Katrin Leitmeyer, Remi N Charrel
Publié dans: Eurosurveillance, 24/50, 2019, ISSN 1560-7917
Éditeur: ECDC
DOI: 10.2807/1560-7917.es.2019.24.50.1900051

On-target versus off-target effects of drugs inhibiting the replication of SARS-CoV-2

Auteurs: Allan Sauvat, Fabiola Ciccosanti, Francesca Colavita, Martina Di Rienzo, Concetta Castilletti, Maria Rosaria Capobianchi, Oliver Kepp, Laurence Zitvogel, Gian Maria Fimia, Mauro Piacentini, Guido Kroemer
Publié dans: Cell Death & Disease, 11/8, 2020, ISSN 2041-4889
Éditeur: Nature Publishing Group
DOI: 10.1038/s41419-020-02842-x

Delayed Interferon Type 1-Induced Antiviral State Is a Potential Factor for Hemorrhagic Fever With Renal Syndrome Severity

Auteurs: Katarina Resman Rus, Miša Korva, Petra Bogovič, Emil Pal, Franc Strle, Tatjana Avšič-Županc
Publié dans: The Journal of Infectious Diseases, 217/6, 2017, Page(s) 926-932, ISSN 0022-1899
Éditeur: University of Chicago Press
DOI: 10.1093/infdis/jix650

Domain Organization and Evolution of the Highly Divergent 5′ Coding Region of Genomes of Arteriviruses, Including the Novel Possum Nidovirus

Auteurs: Anastasia Gulyaeva, Magdalena Dunowska, Erik Hoogendoorn, Julia Giles, Dmitry Samborskiy, Alexander E. Gorbalenya
Publié dans: Journal of Virology, 91/6, 2017, Page(s) e02096-16, ISSN 0022-538X
Éditeur: American Society for Microbiology
DOI: 10.1128/JVI.02096-16

50 years of the International Committee on Taxonomy of Viruses: progress and prospects

Auteurs: Michael J. Adams, Elliot J. Lefkowitz, Andrew M. Q. King, Balázs Harrach, Robert L. Harrison, Nick J. Knowles, Andrew M. Kropinski, Mart Krupovic, Jens H. Kuhn, Arcady R. Mushegian, Max L. Nibert, Sead Sabanadzovic, Hélène Sanfaçon, Stuart G. Siddell, Peter Simmonds, Arvind Varsani, Francisco Murilo Zerbini, Richard J. Orton, Donald B. Smith, Alexander E. Gorbalenya, Andrew J. Davison
Publié dans: Archives of Virology, 162/5, 2017, Page(s) 1441-1446, ISSN 0304-8608
Éditeur: Springer Verlag
DOI: 10.1007/s00705-016-3215-y

Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2017)

Auteurs: Michael J. Adams, Elliot J. Lefkowitz, Andrew M. Q. King, Balázs Harrach, Robert L. Harrison, Nick J. Knowles, Andrew M. Kropinski, Mart Krupovic, Jens H. Kuhn, Arcady R. Mushegian, Max Nibert, Sead Sabanadzovic, Hélène Sanfaçon, Stuart G. Siddell, Peter Simmonds, Arvind Varsani, Francisco Murilo Zerbini, Alexander E. Gorbalenya, Andrew J. Davison
Publié dans: Archives of Virology, 162/8, 2017, Page(s) 2505-2538, ISSN 0304-8608
Éditeur: Springer Verlag
DOI: 10.1007/s00705-017-3358-5

Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2018)

Auteurs: Andrew M. Q. King, Elliot J. Lefkowitz, Arcady R. Mushegian, Michael J. Adams, Bas E. Dutilh, Alexander E. Gorbalenya, Balázs Harrach, Robert L. Harrison, Sandra Junglen, Nick J. Knowles, Andrew M. Kropinski, Mart Krupovic, Jens H. Kuhn, Max L. Nibert, Luisa Rubino, Sead Sabanadzovic, Hélène Sanfaçon, Stuart G. Siddell, Peter Simmonds, Arvind Varsani, Francisco Murilo Zerbini, Andrew J. Daviso
Publié dans: Archives of Virology, 2018, ISSN 0304-8608
Éditeur: Springer Verlag
DOI: 10.1007/s00705-018-3847-1

Virus taxonomy in the age of metagenomics

Auteurs: Peter Simmonds, Mike J. Adams, Mária Benkő, Mya Breitbart, J. Rodney Brister, Eric B. Carstens, Andrew J. Davison, Eric Delwart, Alexander E. Gorbalenya, Balázs Harrach, Roger Hull, Andrew M.Q. King, Eugene V. Koonin, Mart Krupovic, Jens H. Kuhn, Elliot J. Lefkowitz, Max L. Nibert, Richard Orton, Marilyn J. Roossinck, Sead Sabanadzovic, Matthew B. Sullivan, Curtis A. Suttle, Robert B. Tesh, Ren
Publié dans: Nature Reviews Microbiology, 15/3, 2017, Page(s) 161-168, ISSN 1740-1526
Éditeur: Nature Publishing Group
DOI: 10.1038/nrmicro.2016.177

Human Zika infection induces a reduction of IFN-γ producing CD4 T-cells and a parallel expansion of effector Vδ2 T-cells

Auteurs: Eleonora Cimini, Concetta Castilletti, Alessandra Sacchi, Rita Casetti, Veronica Bordoni, Antonella Romanelli, Federica Turchi, Federico Martini, Nicola Tumino, Emanuele Nicastri, Angela Corpolongo, Antonino Di Caro, Gary Kobinger, Alimuddin Zumla, Maria Rosaria Capobianchi, Giuseppe Ippolito, Chiara Agrati
Publié dans: Scientific Reports, 7/1, 2017, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-017-06536-x

Direct evidence for an expanded circulation area of the recently identified Balkan virus (Sandfly fever Naples virus species) in several countries of the Balkan archipelago

Auteurs: Nazli Ayhan, Bulent Alten, Vladimir Ivovic, Vit Dvořák, Franjo Martinkovic, Jasmin Omeragic, Jovana Stefanovska, Dusan Petric, Slavica Vaselek, Devrim Baymak, Ozge E. Kasap, Petr Volf, Remi N. Charrel
Publié dans: Parasites & Vectors, 10/1, 2017, ISSN 1756-3305
Éditeur: BioMed Central
DOI: 10.1186/s13071-017-2334-y

Yellow fever in a traveller returning from Suriname to the Netherlands, March 2017

Auteurs: Marjan Wouthuyzen-Bakker, Marjolein Knoester, Aad P van den Berg, Corine H GeurtsvanKessel, Marion PG Koopmans, Coretta Van Leer-Buter, Bob Oude Velthuis, Suzan D Pas, Wilhelmina LM Ruijs, Jonas Schmidt-Chanasit, Stephen GS Vreden, Tjip S van der Werf, Chantal BEM Reusken, Wouter FW Bierman
Publié dans: Eurosurveillance, 22/11, 2017, ISSN 1025-496X
Éditeur: Centre Europeen pour la Surveillance Epidemiologique du SIDA
DOI: 10.2807/1560-7917.ES.2017.22.11.30488

New reverse genetics and transfection methods to rescue arboviruses in mosquito cells

Auteurs: Thérèse Atieh, Antoine Nougairède, Raphaëlle Klitting, Fabien Aubry, Anna-Bella Failloux, Xavier de Lamballerie, Stéphane Priet
Publié dans: Scientific Reports, 7/1, 2017, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-017-14522-6

“ISA-Lation” of Single-Stranded Positive-Sense RNA Viruses from Non-Infectious Clinical/Animal Samples

Auteurs: Fabien Aubry, Antoine Nougairède, Lauriane de Fabritus, Géraldine Piorkowski, Ernest A. Gould, Xavier de Lamballerie
Publié dans: PLOS ONE, 10/9, 2015, Page(s) e0138703, ISSN 1932-6203
Éditeur: Public Library of Science
DOI: 10.1371/journal.pone.0138703

First detection of European bat lyssavirus type 2 (EBLV-2) in Norway

Auteurs: Torfinn Moldal, Turid Vikøren, Florence Cliquet, Denise A. Marston, Jeroen van der Kooij, Knut Madslien, Irene Ørpetveit
Publié dans: BMC Veterinary Research, 13/1, 2017, ISSN 1746-6148
Éditeur: BioMed Central
DOI: 10.1186/s12917-017-1135-z

Phylogenetic analysis of a newfound bat-borne hantavirus supports a laurasiatherian host association for ancestral mammalian hantaviruses

Auteurs: Peter T. Witkowski, Jan F. Drexler, René Kallies, Martina Ličková, Silvia Bokorová, Gael D. Mananga, Tomáš Szemes, Eric M. Leroy, Detlev H. Krüger, Christian Drosten, Boris Klempa
Publié dans: Infection, Genetics and Evolution, 41, 2016, Page(s) 113-119, ISSN 1567-1348
Éditeur: Elsevier BV
DOI: 10.1016/j.meegid.2016.03.036

Isolation, full genomic characterization and neutralization-based human seroprevalence of Medjerda Valley virus, a novel sandfly-borne phlebovirus belonging to the Salehabad virus complex in northern Tunisia

Auteurs: Laurence Bichaud, Morgan Seston, Xavier De Lamballerie, Cigdem Alkan, Sonia Sakhria, Rémi N. Charrel, Wasfi Fares, Géraldine Piorkowski, Sulaf Alwassouf, Elyes Zhioua, Khalil Dachraoui, Mohamed Mensi
Publié dans: Journal of General Virology, 97/3, 2016, Page(s) 602-610, ISSN 0022-1317
Éditeur: Society for General Microbiology
DOI: 10.1099/jgv.0.000389

Background review for diagnostic test development for Zika virus infection

Auteurs: Rémi N Charrel, Isabelle Leparc-Goffart, Suzan Pas, Xavier de Lamballerie, Marion Koopmans, Chantal Reusken
Publié dans: Bulletin of the World Health Organization, 94/8, 2016, Page(s) 574-584D, ISSN 0042-9686
Éditeur: World Health Organization
DOI: 10.2471/BLT.16.171207

Utilisation of ISA Reverse Genetics and Large-Scale Random Codon Re-Encoding to Produce Attenuated Strains of Tick-Borne Encephalitis Virus within Days

Auteurs: Lauriane de Fabritus, Antoine Nougairède, Fabien Aubry, Ernest A. Gould, Xavier de Lamballerie
Publié dans: PLOS ONE, 11/8, 2016, Page(s) e0159564, ISSN 1932-6203
Éditeur: Public Library of Science
DOI: 10.1371/journal.pone.0159564

Clinical comparison, standardization and optimization of Zika virus molecular detection

Auteurs: Victor M. Corman, Andrea Rasche, Cecile Baronti, Souhaib Aldabbagh, Daniel Cadar, Chantal B.E.M. Reusken, Suzan D. Pas, Abraham Goorhuis, Janke Schinkel, Richard Molenkamp, Beate M. Kuemmerer, Tobias Bleicker, Sebastian Brünink, Monika Eschbach-Bludau, Anna M. Eis-Hübinger, Marion P. Koopmans, Jonas Schmidt-Chanasit, Martin P. Grobusch, Xavier de Lamballerie, Christian Drosten, Jan Felix Drexler
Publié dans: Bulletin of the World Health Organization, 2016, ISSN 0042-9686
Éditeur: World Health Organization
DOI: 10.2471/BLT.16.175950

Neutralization-based seroprevalence of Toscana virus and sandfly fever Sicilian virus in dogs and cats from Portugal

Auteurs: Sulaf Alwassouf, Carla Maia, Nazli Ayhan, Monica Coimbra​, Jose Manuel Cristovao​, Herve Richet​, Laurence Bichaud​, Lenea Campino​, Remi N. Charrel​
Publié dans: Journal of General Virology, 97/11, 2016, Page(s) 2816-2823, ISSN 0022-1317
Éditeur: Society for General Microbiology
DOI: 10.1099/jgv.0.000592

Compartmentalized Replication of SARS-Cov-2 in Upper vs. Lower Respiratory Tract Assessed by Whole Genome Quasispecies Analysis

Auteurs: Martina Rueca, Barbara Bartolini, Cesare Ernesto Maria Gruber, Antonio Piralla, Fausto Baldanti, Emanuela Giombini, Francesco Messina, Luisa Marchioni, Giuseppe Ippolito, Antonino Di Caro, Maria Rosaria Capobianchi
Publié dans: Microorganisms, 8/9, 2020, Page(s) 1302, ISSN 2076-2607
Éditeur: MDPI
DOI: 10.3390/microorganisms8091302

Detection of 2019 novel coronavirus (2019-nCoV) by real-time RT-PCR

Auteurs: Victor M Corman, Olfert Landt, Marco Kaiser, Richard Molenkamp, Adam Meijer, Daniel KW Chu, Tobias Bleicker, Sebastian Brünink, Julia Schneider, Marie Luisa Schmidt, Daphne GJC Mulders, Bart L Haagmans, Bas van der Veer, Sharon van den Brink, Lisa Wijsman, Gabriel Goderski, Jean-Louis Romette, Joanna Ellis, Maria Zambon, Malik Peiris, Herman Goossens, Chantal Reusken, Marion PG Koopmans, Christia
Publié dans: Eurosurveillance, 25/3, 2020, ISSN 1560-7917
Éditeur: ECDC
DOI: 10.2807/1560-7917.es.2020.25.3.2000045

Detection of Usutu virus infection in wild birds in the United Kingdom, 2020

Auteurs: Arran J Folly, Becki Lawson, Fabian ZX Lean, Fiona McCracken, Simon Spiro, Shinto K John, Joseph P Heaver, Katharina Seilern-Moy, Nic Masters, Luis M Hernández-Triana, L Paul Phipps, Alejandro Nuñez, Anthony R Fooks, Andrew A Cunningham, Nicholas Johnson, Lorraine M McElhinney
Publié dans: Eurosurveillance, 25/41, 2020, ISSN 1560-7917
Éditeur: ECDC
DOI: 10.2807/1560-7917.es.2020.25.41.2001732

Identification of phlebotomine sand flies (Diptera: Psychodidae) from leishmaniasis endemic areas in southeastern Mexico using DNA barcoding

Auteurs: Adebiyi A. Adeniran, Nadia A. Fernández‐Santos, Jorge J. Rodríguez‐Rojas, Nancy Treviño‐Garza, Heron Huerta‐Jiménez, Pedro C. Mis‐Ávila, Wilbert A. Pérez‐Pech, Luis M. Hernández‐Triana, Mario A. Rodríguez‐Pérez
Publié dans: Ecology and Evolution, 9/23, 2019, Page(s) 13543-13554, ISSN 2045-7758
Éditeur: John Wiley and Sons Ltd
DOI: 10.1002/ece3.5811

Other (1)

A planarian nidovirus expands the limits of RNA genome size

Auteurs: Saberi, A., Gulyaeva, A.A., Brubacher, J.L., Newmark, P.A., A. E. Gorbalenya
Publié dans: BioRxiv, 2018
Éditeur: BioRxiv
DOI: 10.1101/299776

Non-peer reviewed articles (8)

Genetic analysis of a rabies virus host shift event reveals within-host viral dynamics in a new host

Auteurs: Denise A Marston, Daniel L Horton, Javier Nunez, Richard J Ellis, Richard J Orton, Nicholas Johnson, Ashley C Banyard, Lorraine M McElhinney, Conrad M Freuling, Müge Fırat, Nil Ünal, Thomas Müller, Xavier de Lamballerie, Anthony R Fooks
Publié dans: Virus Evolution, 3/2, 2017, ISSN 2057-1577
Éditeur: europe pmc
DOI: 10.1093/ve/vex038

External quality assessment study for ebolavirus PCR-diagnostic promotes international preparedness during the 2014 – 2016 Ebola outbreak in West Africa

Auteurs: Heinz Ellerbrok, Sonja Jacobsen, Pranav Patel, Toni Rieger, Markus Eickmann, Stephan Becker, Stephan Günther, Dhamari Naidoo, Livia Schrick, Kathrin Keeren, Angelina Targosz, Anette Teichmann, Pierre Formenty, Matthias Niedrig
Publié dans: PLOS Neglected Tropical Diseases, 11/5, 2017, Page(s) e0005570, ISSN 1935-2735
Éditeur: PLOS
DOI: 10.1371/journal.pntd.0005570

Phlebotomine sand fly–borne pathogens in the Mediterranean Basin: Human leishmaniasis and phlebovirus infections

Auteurs: Martina Moriconi, Gianluca Rugna, Mattia Calzolari, Romeo Bellini, Alessandro Albieri, Paola Angelini, Roberto Cagarelli, Maria P. Landini, Remi N. Charrel, Stefania Varani
Publié dans: PLOS Neglected Tropical Diseases, 11/8, 2017, Page(s) e0005660, ISSN 1935-2735
Éditeur: europe pmc
DOI: 10.1371/journal.pntd.0005660

Complete Genomic Sequence of Canine Distemper Virus from an Ethiopian Wolf

Auteurs: Denise A. Marston, Jemma Watson, Emma L. Wise, Richard J. Ellis, Eric Bedin, Girma Ayalew, Muktar Abute, Xavier de Lamballerie, Anthony R. Fooks, Claudio Sillero-Zubiri, Ashley C. Banyard
Publié dans: Genome Announcements, 5/29, 2017, Page(s) e00621-17, ISSN 2169-8287
Éditeur: europe pmc
DOI: 10.1128/genomeA.00621-17

Full-Length Genome Sequence of a Chikungunya Virus Isolate from the 2017 Autochthonous Outbreak, Lazio Region, Italy

Auteurs: Fabrizio Carletti, Patrizia Marsella, Francesca Colavita, Silvia Meschi, Eleonora Lalle, Licia Bordi, Domenico Di Lallo, Vincenzo Panella, Antonino Di Caro, Emanuele Nicastri, Paola Scognamiglio, Simone Lanini, Francesco Vairo, Maria R. Capobianchi, Giuseppe Ippolito, Concetta Castilletti
Publié dans: Genome Announcements, 5/49, 2017, Page(s) e01306-17, ISSN 2169-8287
Éditeur: Europe PMC
DOI: 10.1128/genomeA.01306-17

Isolation and sequencing of Dashli virus, a novel Sicilian-like virus in sandflies from Iran; genetic and phylogenetic evidence for the creation of one novel species within the Phlebovirus genus in the Phenuiviridae family

Auteurs: Cigdem Alkan, Vahideh Moin Vaziri, Nazli Ayhan, Mehdi Badakhshan, Laurence Bichaud, Nourina Rahbarian, Ezat-Aldin Javadian, Bulent Alten, Xavier de Lamballerie, Remi N. Charrel
Publié dans: PLOS Neglected Tropical Diseases, 11/12, 2017, Page(s) e0005978, ISSN 1935-2735
Éditeur: europe pmc
DOI: 10.1371/journal.pntd.0005978

Complete Genome Sequences of Six South African Rabies Viruses: TABLE 1 

Auteurs: Claude Sabeta, Baby Phahladira, Denise A. Marston, Emma L. Wise, Richard J. Ellis, Anthony R. Fooks
Publié dans: Genome Announcements, 3/5, 2015, Page(s) e01085-15, ISSN 2169-8287
Éditeur: Genome Announcements
DOI: 10.1128/genomeA.01085-15

Complete Coding Sequences of Two Dengue Virus Type 2 Strains Isolated from an Outbreak in Burkina Faso in 2016

Auteurs: Cécile Baronti, Géraldine Piorkowski, Franck Touret, Rémi Charrel, Xavier de Lamballerie, Antoine Nougairede
Publié dans: Genome Announcements, 5/17, 2017, Page(s) e00209-17, ISSN 2169-8287
Éditeur: Genome Announcements
DOI: 10.1128/genomeA.00209-17