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Establishing ERA Chair position in Synthetic Biology at University of Tartu Institute of Technology

Deliverables

Report on the activities of incoming researchers 2

The report will reflect an overview of work progress in TUIT.

Report on the activities of incoming researchers 4

The report will reflect an overview of work progress in TUIT.

Reports on training outcomes 1

Reports presenting the overview about the soft skills training events and their results on annual basis

Reports on training outcomes 2

Reports presenting the overview about the soft skills training events and their results on annual basis.

Report on the activities of incoming researchers 1

The report will reflect an overview of work progress in TUIT.

Dissemination & communication report

Dissemination & communication report

Reports on training outcomes 3

Reports presenting the overview about the soft skills training events and their results on annual basis.

Report on the activities of incoming researchers 5

The report will reflect an overview of work progress in TUIT.

Report on ERA Chair management principles 1

Report about the courses and seminars introducing ERA Chair management principles for the UT staff.

Report on innovative doctoral training courses 1

Report presents the measurable results of training activities of the doctoral students.

Report on ERA Chair management principles 4

Report about the courses and seminars introducing ERA Chair management principles for the UT staff.

Centre for Synthetic Biology Research and Innovation Strategy 1

In month 36 the first version of the Research and Innovation Strategy will be introduced, in month 48 the intermediary and in month 60 the final version of plan will be presented. Report also presents overview of links with stakeholders and industry.

Report on ERA Chair management principles 2

Report about the courses and seminars introducing ERA Chair management principles for the UT staff.

Report on the activities of incoming researchers 3

The report will reflect an overview of work progress in TUIT.

Report on innovative doctoral training courses 2

Report presents the measurable results of training activities of the doctoral students.

Statement about the introduced publications for the reference period.

TUIT will introduce in the reporting tool on the Participant Portal of the project all publications (in the particular field of research) during the three years preceding the start date of the project.

Centre for Synthetic Biology Research and Innovation Strategy 2

In month 36 the first version of the Research and Innovation Strategy will be introduced, in month 48 the intermediary and in month 60 the final version of plan will be presented. Report also presents overview of links with stakeholders and industry.

Annual Advisory Board recommendations 1

A report presenting the recommendations from the Advisory Board for the next 12 months.

Dissemination & communication report 1

Dissemination & communication report.

Report of recruitment process 2

Report presenting detailed recruitment process for ERA Chair holder in M6 and for his / her team in M12.

Annual Advisory Board recommendations 5

A report presenting the recommendations from the Advisory Board for the next 12 months.

Annual Advisory Board recommendations 4

A report presenting the recommendations from the Advisory Board for the next 12 months.

Annual Advisory Board recommendations 3

A report presenting the recommendations from the Advisory Board for the next 12 months

Report on ERA Chair management principles 3

Report about the courses and seminars introducing ERA Chair management principles for the UT staff.

Report of recruitment process 1

Report presenting detailed recruitment process for ERA Chair holder in M6 and for his / her team in M12.

Report on innovative doctoral training courses 3

Report presents the measurable results of training activities of the doctoral students.

Annual Advisory Board recommendations 2

A report presenting the recommendations from the Advisory Board for the next 12 months.

Project Website

A continuously updated project website will provide access to the objectives and results achieved within the project, as well as for promotion of planned events in the frame of UT-CSB (conferences, practical courses, etc.).

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Publications

Benchmarking accuracy and precision of intensity‐based absolute quantification of protein abundances in Saccharomyces cerevisiae

Author(s): Benjamín J. Sánchez, Petri‐Jaan Lahtvee, Kate Campbell, Sergo Kasvandik, Rosemary Yu, Iván Domenzain, Aleksej Zelezniak, Jens Nielsen
Published in: PROTEOMICS, 2021, Page(s) 2000093, ISSN 1615-9853
DOI: 10.1002/pmic.202000093

Cell‐Laden Hydrogels for Multikingdom 3D Printing

Author(s): Trevor G. Johnston, Jacob P. Fillman, Hans Priks, Tobias Butelmann, Tarmo Tamm, Rahul Kumar, Petri‐Jaan Lahtvee, Alshakim Nelson
Published in: Macromolecular Bioscience, Issue 20/8, 2020, Page(s) 2000121, ISSN 1616-5187
DOI: 10.1002/mabi.202000121

C/N ratio and carbon source-dependent lipid production profiling in Rhodotorula toruloides

Author(s): Helberth Júnnior Santos Lopes, Nemailla Bonturi, Eduard Johannes Kerkhoven, Everson Alves Miranda, Petri-Jaan Lahtvee
Published in: Applied Microbiology and Biotechnology, Issue 104/6, 2020, Page(s) 2639-2649, ISSN 0175-7598
DOI: 10.1007/s00253-020-10386-5

Bioenergy Yields from Sequential Bioethanol and Biomethane Production: An Optimized Process Flow

Author(s): Lisandra Rocha-Meneses, Oghenetejiri Frances Otor, Nemailla Bonturi, Kaja Orupõld, Timo Kikas
Published in: Sustainability, Issue 12/1, 2020, Page(s) 272, ISSN 2071-1050
DOI: 10.3390/su12010272

Physical Confinement Impacts Cellular Phenotypes within Living Materials

Author(s): Hans Priks, Tobias Butelmann, Aleksandr Illarionov, Trevor G. Johnston, Christopher Fellin, Tarmo Tamm, Alshakim Nelson, Rahul Kumar, Petri-Jaan Lahtvee
Published in: ACS Applied Bio Materials, Issue 3/7, 2020, Page(s) 4273-4281, ISSN 2576-6422
DOI: 10.1021/acsabm.0c00335

Xylose Metabolism and the Effect of Oxidative Stress on Lipid and Carotenoid Production in Rhodotorula toruloides: Insights for Future Biorefinery

Author(s): Marina Julio Pinheiro, Nemailla Bonturi, Isma Belouah, Everson Alves Miranda, Petri-Jaan Lahtvee
Published in: Frontiers in Bioengineering and Biotechnology, Issue 8, 2020, ISSN 2296-4185
DOI: 10.3389/fbioe.2020.01008

Enhancing Bioenergy Yields from Sequential Bioethanol and Biomethane Production by Means of Solid–Liquid Separation of the Substrates

Author(s): Lisandra Rocha-Meneses, Jorge A Ferreira, Nemailla Bonturi, Kaja Orupõld, Timo Kikas
Published in: Energies, Issue 12/19, 2019, Page(s) 3683, ISSN 1996-1073
DOI: 10.3390/en12193683

Rhodotorula toruloides Single Cell Oil Production Using Eucalyptus urograndis Hemicellulose Hydrolysate as a Carbon Source

Author(s): Helberth Júnnior Santos Lopes, Nemailla Bonturi, Everson Alves Miranda
Published in: Energies, Issue 13/4, 2020, Page(s) 795, ISSN 1996-1073
DOI: 10.3390/en13040795

Adaptation to different types of stress converge on mitochondrial metabolism

Author(s): Petri-Jaan Lahtvee, Rahul Kumar, Björn M. Hallström, Jens Nielsen
Published in: Molecular Biology of the Cell, Issue 27/15, 2016, Page(s) 2505-2514, ISSN 1059-1524
DOI: 10.1091/mbc.e16-03-0187

Microbial oil production in sugarcane bagasse hemicellulosic hydrolysate without nutrient supplementation by a Rhodosporidium toruloides adapted strain

Author(s): Nemailla Bonturi, Aline Crucello, Américo José Carvalho Viana, Everson Alves Miranda
Published in: Process Biochemistry, Issue 57, 2017, Page(s) 16-25, ISSN 1359-5113
DOI: 10.1016/j.procbio.2017.03.007

The yeast osmostress response is carbon source dependent

Author(s): Roja Babazadeh, Petri-Jaan Lahtvee, Caroline B. Adiels, Mattias Goksör, Jens B. Nielsen, Stefan Hohmann
Published in: Scientific Reports, Issue 7/1, 2017, ISSN 2045-2322
DOI: 10.1038/s41598-017-01141-4

Improving the phenotype predictions of a yeast genome‐scale metabolic model by incorporating enzymatic constraints

Author(s): Benjamín J Sánchez, Cheng Zhang, Avlant Nilsson, Petri‐Jaan Lahtvee, Eduard J Kerkhoven, Jens Nielsen
Published in: Molecular Systems Biology, Issue 13/8, 2017, Page(s) 935, ISSN 1744-4292
DOI: 10.15252/msb.20167411

Absolute Quantification of Protein and mRNA Abundances Demonstrate Variability in Gene-Specific Translation Efficiency in Yeast

Author(s): Petri-Jaan Lahtvee, Benjamín J. Sánchez, Agata Smialowska, Sergo Kasvandik, Ibrahim E. Elsemman, Francesco Gatto, Jens Nielsen
Published in: Cell Systems, Issue 4/5, 2017, Page(s) 495-504.e5, ISSN 2405-4712
DOI: 10.1016/j.cels.2017.03.003

Transcriptome analysis of the thermotolerant yeast Kluyveromyces marxianus CCT 7735 under ethanol stress

Author(s): Raphael Hermano Santos Diniz, Juan C. Villada, Mariana Caroline Tocantins Alvim, Pedro Marcus Pereira Vidigal, Nívea Moreira Vieira, Mónica Lamas-Maceiras, María Esperanza Cerdán, María-Isabel González-Siso, Petri-Jaan Lahtvee, Wendel Batista da Silveira
Published in: Applied Microbiology and Biotechnology, Issue 101/18, 2017, Page(s) 6969-6980, ISSN 0175-7598
DOI: 10.1007/s00253-017-8432-0

Characterization of potassium, sodium and their interactions effects in yeasts

Author(s): Aleksandr Illarionov, Petri-Jaan Lahtvee, Rahul Kumar
Published in: bioRxiv, 2020
DOI: 10.1101/2020.10.22.350355

Proteome overabundance enables respiration but limitation onsets carbon overflow

Author(s): Rahul Kumar, Petri-Jaan Lahtvee
Published in: bioRxiv, 2020
DOI: 10.1101/2020.02.20.957662

There are 45 publications uploaded under the continuous reporting data.

Author(s): xx
Published in: 2016

Metabolism Control in 3D Printed Living Materials

Author(s): Tobias Butelmann, Hans Priks, Zoel Parent, Trevor G. Johnston, Tarmo Tamm, Alshakim Nelson, Petri-Jaan Lahtvee, Rahul Kumar
Published in: bioRxiv, 2021, ISSN 0362-4331
DOI: 10.1101/2021.01.15.426505