Laying the Biological, Computational and Architectural Foundations for Human Cell Lineage Discovery

Project Information

LineageDiscovery

Grant agreement ID: 670535

DOI 10.3030/670535

Project closed

EC signature date 7 August 2015

Start date 1 September 2015

End date 31 January 2021

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost € 2 250 000,00

EU contribution € 2 250 000,00

Coordinated by

WEIZMANN INSTITUTE OF SCIENCE
Israel

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Peer reviewed articles (9)

Whole-Genome Amplification—Surveying Yield, Reproducibility, and Heterozygous Balance, Reported by STR-Targeting MIPs

Author(s): Ofir Raz, Liming Tao, Tamir Biezuner, Tzipy Marx, Yaara Neumeier, Narek Tumanyan, Ehud Shapiro
Published in: International Journal of Molecular Sciences, 2022, ISSN 1422-0067
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms23116161

A generic, cost-effective, and scalable cell lineage analysis platform

Author(s): Tamir Biezuner, Adam Spiro, Ofir Raz, Shiran Amir, Lilach Milo, Rivka Adar, Noa Chapal-Ilani, Veronika Berman, Yael Fried, Elena Ainbinder, Galit Cohen, Haim M. Barr, Ruth Halaban, Ehud Shapiro
Published in: Genome Research, Issue 26/11, 2016, Page(s) 1588-1599, ISSN 1088-9051
Publisher: Cold Spring Harbor Laboratory Press
DOI: 10.1101/gr.202903.115

eSTGt: a programming and simulation environment for population dynamics

Author(s): Adam Spiro, Ehud Shapiro
Published in: BMC Bioinformatics, Issue 17/1, 2016, ISSN 1471-2105
Publisher: BioMed Central
DOI: 10.1186/s12859-016-1004-y

Erratum to: eSTGt: a programming and simulation environment for population dynamics

Author(s): Spiro, Adam; Shapiro, Ehud
Published in: BMC Bioinformatics, Issue 1, 2016, ISSN 1471-2105
Publisher: BioMed Central
DOI: 10.1186/s12859-016-1155-x

Accuracy of Answers to Cell Lineage Questions Depends on Single-Cell Genomics Data Quality and Quantity

Author(s): Adam Spiro; Ehud Shapiro
Published in: PLoS Computational Biology, Issue 1, 2016, ISSN 1553-734X
Publisher: Public Library of Science
DOI: 10.1371/journal.pcbi.1004983

On the journey from nematode to human, scientists dive by the zebrafish cell lineage tree

Author(s): Ehud Shapiro
Published in: Genome Biology, Issue 19/1, 2018, ISSN 1474-760X
Publisher: BMC
DOI: 10.1186/s13059-018-1453-x

Short tandem repeat stutter model inferred from direct measurement of in vitro stutter noise

Author(s): Ofir Raz, Tamir Biezuner, Adam Spiro, Shiran Amir, Lilach Milo, Alon Titelman, Amos Onn, Noa Chapal-Ilani, Liming Tao, Tzipy Marx, Uriel Feige, Ehud Shapiro
Published in: Nucleic Acids Research, Issue 47/5, 2019, Page(s) 2436-2445, ISSN 0305-1048
Publisher: Oxford University Press
DOI: 10.1093/nar/gky1318

Benchmarked approaches for reconstruction of in vitro cell lineages and in silico models of C. elegans and M. musculus developmental trees

Author(s): W Gong, AA Granados, J Hu, MG Jones, O Raz, I Salvador-Martínez,…Ehud Shapiro, MichaelB.Elowitz, Pablo Meyer
Published in: Cell Systems, 2021, ISSN 2405-4712
Publisher: CellPress
DOI: 10.1016/j.cels.2021.05.008

Retrospective cell lineage reconstruction in humans by using short tandem repeats

Author(s): Liming Tao, Ofir Raz, Zipora Marx, Manjusha S Ghosh, Sandra Huber, Julia Greindl-Junghans, Tamir Biezuner, Shiran Amir, Lilach Milo, Rivka Adar, Ron Levy, Amos Onn, Noa Chapal-Ilani, Veronika Berman, Asaf Ben Arie, Guy Rom, Barak Oron, Ruth Halaban, Zbigniew T.Czyz, Melanie Warner-Klein, Christoph A. Klein, Ehud Shapiro
Published in: Cell reports methods, 2021, ISSN 2667-2375
Publisher: CellPress
DOI: 10.1016/j.crmeth.2021.100054