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Laying the Biological, Computational and Architectural Foundations for Human Cell Lineage Discovery

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Publications

Comparison of seven single cell Whole Genome Amplification commercial kits using targeted sequencing.

Author(s): Tamir Biezuner, Ofir Raz, Shiran Amir, Lilach Milo, Rivka Adar, Yael Fried, Elena Ainbinder, Ehud Shapiro
Published in: 2017
DOI: 10.1101/186940

A duplex MIPs-based biological-computational cell lineage discovery platform.

Author(s): 6. Liming Tao, Ofir Raz, Zipora Marx, Tamir Biezuner, Shiran Amir, Lilach Milo, Rivka Adar, Amos Onn, Noa Chapal, Ilani, Veronika Berman, Ron Levy, Barak Oron, Ehud Shapiro
Published in: 2017
DOI: 10.1101/191296

A generic, cost-effective, and scalable cell lineage analysis platform

Author(s): Tamir Biezuner, Adam Spiro, Ofir Raz, Shiran Amir, Lilach Milo, Rivka Adar, Noa Chapal-Ilani, Veronika Berman, Yael Fried, Elena Ainbinder, Galit Cohen, Haim M. Barr, Ruth Halaban, Ehud Shapiro
Published in: Genome Research, Issue 26/11, 2016, Page(s) 1588-1599, ISSN 1088-9051
DOI: 10.1101/gr.202903.115

eSTGt: a programming and simulation environment for population dynamics

Author(s): Adam Spiro, Ehud Shapiro
Published in: BMC Bioinformatics, Issue 17/1, 2016, ISSN 1471-2105
DOI: 10.1186/s12859-016-1004-y

Erratum to: eSTGt: a programming and simulation environment for population dynamics

Author(s): Spiro, Adam; Shapiro, Ehud
Published in: BMC Bioinformatics, Issue 1, 2016, ISSN 1471-2105
DOI: 10.1186/s12859-016-1155-x

Accuracy of Answers to Cell Lineage Questions Depends on Single-Cell Genomics Data Quality and Quantity

Author(s): Adam Spiro; Ehud Shapiro
Published in: PLoS Computational Biology, Issue 1, 2016, ISSN 1553-734X
DOI: 10.1371/journal.pcbi.1004983

On the journey from nematode to human, scientists dive by the zebrafish cell lineage tree

Author(s): Ehud Shapiro
Published in: Genome Biology, Issue 19/1, 2018, ISSN 1474-760X
DOI: 10.1186/s13059-018-1453-x

Short tandem repeat stutter model inferred from direct measurement of in vitro stutter noise

Author(s): Ofir Raz, Tamir Biezuner, Adam Spiro, Shiran Amir, Lilach Milo, Alon Titelman, Amos Onn, Noa Chapal-Ilani, Liming Tao, Tzipy Marx, Uriel Feige, Ehud Shapiro
Published in: Nucleic Acids Research, Issue 47/5, 2019, Page(s) 2436-2445, ISSN 0305-1048
DOI: 10.1093/nar/gky1318