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Methods in Research on Research

Deliverables

ORDP

ORDP: Open Research Data Pilot

Guidance by UPC

Guidance for research and practice to improve adherence to reporting guidelines

Guidance by UPD

Guidance on the account of risk of bias in meta-analysis

Integrity tool measuring paper integrity

Tool measuring paper integrity

Manual of interventions

Manual describing interventions to improve adherence of reporting guidelines during the peer-review process

Automated tool

Automated tool to identify diagnostic studies

Final communication report

Reporting of the communication and dissemination activities

Mapping of the themes addressed in peer-reviewers comments

Content analysis to identify themes addressed by peer-reviewers in their comments

Guidance for research

Guidance on how to involve collective intelligence

Database of strategies to avoid spin

Database of active strategies to prevent, eliminate or limit spin in clinical research spin

Guidance by UG

Guidance on integration of results obtained from different causal inference in a meta-analysis approach

Newsletter

Newsletter on the network activities every 4 months

Challenge

Team working of the 15 PhD students

Guidance on methods for causal inferences

Guidance document defining adequate methods for causal inferences

Methods for integrating bias

Comparison of different methods for integrating bias in meta-analysis

Guidance for alternative strategies

Comparison of alternative strategies for developing innovative medical tests and development of guidance

Mapping of recruitment practices and methods

Mapping of practices and methods of recruitment and monitoring in trials

Mid-term communication report

Reporting of the communication and dissemination activities

Mapping of the power relationship in communication

Results of the discourse analysis and the use of language implying power-relations in peer-reviewers comments and answers to peer-reviewers

Guidance for patients involvement

Guidance for patients involvement in core outcome set

Final report

Reporting of all the programme progress

Mapping of methods to involve collective intelligence

Systematic review and qualitative study to define how collective intelligence should be involved

Automated tool of spin

Automated tool to identify spin in reports

Guidance by US

Guidance on future research and implementation of the intervention according to the results of its evaluation

Mapping of metrics properties

Analysis of metric properties of reporting guidelines and quality tools

Online tool

Creation of an online tool using visualisation methods with an automatic updating feature to identify new trials as they become available

Guidance by UL

Guidance through a software with a web-based interface

Guidance by AMC

Guidance for reporting results and making conclusions

Data Management Plan

Formulation of a Data Management Plan

Courses

10 network courses

Workshops

5 advanced research network workshops

Journal club webinar

Letter to the editors

Network training certificates

Awarding training certificates to 15 students

Doctoral degree

Awarding doctoral degrees to 15 students

Website

Launch of the network website

Supervisory Board of the network

Creation of the supervisory board of the network

Seminar

1 seminar with visiting researchers

Searching for OpenAIRE data...

Publications

Contribution of Natural Language Processing in Predicting Rehospitalization Risk


Published in: ISSN 0025-7079
DOI: 10.1097/MLR.0000000000000750

From the Theoretical to the Practical: How to Evaluate the Ethical and Scientific Justifications of Randomized Clinical Trials

Author(s): Maria Olsen, Melissa K. Sharp, Patrick M. Bossuyt
Published in: Journal of Clinical Epidemiology, 2018, ISSN 0895-4356
DOI: 10.1016/j.jclinepi.2018.03.008

Different Pediatric Survival After Cardiac Arrest

Author(s): Camila Olarte Parra, Linda Nyanchoka, Els Goetghebeur
Published in: Jama Pediatrics, 2017, Page(s) 708, ISSN 2168-6203

DIABRISK-SL trial: further consideration of age and impact of imputations

Author(s): Efstathia Gkioni, Ketevan Glonti, Susanna Dodd, Carrol Gamble
Published in: BMC Medicine, Issue 17/1, 2019, ISSN 1741-7015
DOI: 10.1186/s12916-019-1361-2

2-Year outcome from two parallel randomized controlled trials. Reporting considerations

Author(s): Van Thu Nguyen, Cecilia Superchi, Isabelle Boutron
Published in: Osteoarthritis and Cartilage, Issue Volume 27, Issue 3, 2019, Page(s) e3-e4, ISSN 1063-4584

Evaluating an editorial intervention to reduce spin in the abstract conclusion of manuscripts: a randomized controlled trial




Every ROSE has its thorns

Author(s): Melissa K. Sharp, Linda Nyanchoka, Darko Hren
Published in: Environmental Evidence, Issue 7/1, 2018, ISSN 2047-2382
DOI: 10.1186/s13750-018-0132-4

A scoping review protocol on the roles and tasks of peer reviewers in the manuscript review process in biomedical journals

Author(s): Ketevan Glonti, Daniel Cauchi, Erik Cobo, Isabelle Boutron, David Moher, Darko Hren
Published in: BMJ Open, Issue 7/10, 2017, Page(s) e017468, ISSN 2044-6055
DOI: 10.1136/bmjopen-2017-017468

Are CONSORT checklists submitted by authors adequately reflecting what information is actually reported in published papers?

Author(s): David Blanco, Alice M. Biggane, Erik Cobo
Published in: Trials, Issue 19/1, 2018, ISSN 1745-6215
DOI: 10.1186/s13063-018-2475-0

Survey indicated that core outcome set development is increasingly including patients, being conducted internationally and using Delphi surveys

Author(s): Alice M. Biggane, Lucy Brading, Philippe Ravaud, Bridget Young, Paula R. Williamson
Published in: Trials, Issue 19/1, 2018, ISSN 1745-6215
DOI: 10.1186/s13063-018-2493-y

Interventions to improve adherence to reporting guidelines in health research: a scoping review protocol

Author(s): David Blanco, Jamie J Kirkham, Douglas G Altman, David Moher, Isabelle Boutron, Erik Cobo
Published in: BMJ Open, Issue 7/11, 2017, Page(s) e017551, ISSN 2044-6055
DOI: 10.1136/bmjopen-2017-017551

The STROBE extensions: protocol for a qualitative assessment of content and a survey of endorsement

Author(s): Melissa K Sharp, Ana Utrobičić, Guadalupe Gómez, Erik Cobo, Elizabeth Wager, Darko Hren
Published in: BMJ Open, Issue 7/10, 2017, Page(s) e019043, ISSN 2044-6055
DOI: 10.1136/bmjopen-2017-019043

Tools used to assess the quality of peer review reports: a methodological systematic review

Author(s): Cecilia Superchi, José Antonio González, Ivan Solà, Erik Cobo, Darko Hren, Isabelle Boutron
Published in: BMC Medical Research Methodology, Issue 19/1, 2019, ISSN 1471-2288
DOI: 10.1186/s12874-019-0688-x

Disagreements in risk of bias assessment for randomised controlled trials included in more than one Cochrane systematic reviews: a research on research study using cross-sectional design

Author(s): Lorenzo Bertizzolo, Patrick Bossuyt, Ignacio Atal, Philippe Ravaud, Agnes Dechartres
Published in: BMJ Open, Issue 9/4, 2019, Page(s) e028382, ISSN 2044-6055
DOI: 10.1136/bmjopen-2018-028382

A scoping review provided a framework for new ways of doing research through mobilizing collective intelligence

Author(s): Van Thu Nguyen, Mehdi Benchoufi, Bridget Young, Lina Ghosn, Philippe Ravaud, Isabelle Boutron
Published in: Journal of Clinical Epidemiology, Issue 110, 2019, Page(s) 1-11, ISSN 0895-4356
DOI: 10.1016/j.jclinepi.2019.02.007

A scoping review describes methods used to identify, prioritize and display gaps in health research

Author(s): Linda Nyanchoka, Catrin Tudur-Smith, Van Nguyen Thu, Valentia Iversen, Andrea C. Tricco, Raphaël Porcher
Published in: Journal of Clinical Epidemiology, Issue 109, 2019, Page(s) 99-110, ISSN 0895-4356
DOI: 10.1016/j.jclinepi.2019.01.005

Overcoming Barriers to Mobilizing Collective Intelligence in Research: Qualitative Study of Researchers With Experience of Collective Intelligence

Author(s): Van Thu Nguyen, Bridget Young, Philippe Ravaud, Nivantha Naidoo, Mehdi Benchoufi, Isabelle Boutron
Published in: Journal of Medical Internet Research, Issue 21/7, 2019, Page(s) e13792, ISSN 1438-8871
DOI: 10.2196/13792

Key stakeholders’ perspectives and experiences with defining, identifying and displaying gaps in health research: a qualitative study protocol

Author(s): Linda Nyanchoka, Catrin Tudur-Smith, Raphaël Porcher, Darko Hren
Published in: BMJ Open, Issue 9/8, 2019, Page(s) e027926, ISSN 2044-6055
DOI: 10.1136/bmjopen-2018-027926

A survey exploring biomedical editors’ perceptions of editorial interventions to improve adherence to reporting guidelines

Author(s): David Blanco, Darko Hren, Jamie J. Kirkham, Erik Cobo, Sara Schroter
Published in: F1000Research, Issue 8, 2019, Page(s) 1682, ISSN 2046-1402
DOI: 10.12688/f1000research.20556.3

Scoping review on interventions to improve adherence to reporting guidelines in health research

Author(s): David Blanco, Doug Altman, David Moher, Isabelle Boutron, Jamie J Kirkham, Erik Cobo
Published in: BMJ Open, Issue 9/5, 2019, Page(s) e026589, ISSN 2044-6055
DOI: 10.1136/bmjopen-2018-026589

PPI in research: a reflection from early stage researchers

Author(s): Alice M. Biggane, Maria Olsen, Paula R. Williamson
Published in: Research Involvement and Engagement, Issue 5/1, 2019, ISSN 2056-7529
DOI: 10.1186/s40900-019-0170-2

A systematic review describes models for recruitment prediction at the design stage of a clinical trial

Author(s): Efstathia Gkioni, Roser Rius, Susanna Dodd, Carrol Gamble
Published in: Journal of Clinical Epidemiology, Issue 115, 2019, Page(s) 141-149, ISSN 0895-4356
DOI: 10.1016/j.jclinepi.2019.07.002

Participating in core outcome set development via Delphi surveys: qualitative interviews provide pointers to inform guidance

Author(s): Alice M Biggane, Paula R Williamson, Philippe Ravaud, Bridget Young
Published in: BMJ Open, Issue 9/11, 2019, Page(s) e032338, ISSN 2044-6055
DOI: 10.1136/bmjopen-2019-032338

The STROBE Extensions


Published in: ISSN 1044-3983
DOI: 10.1097/EDE.0000000000000899

Using the STROBE statement: survey findings emphasized the role of journals in enforcing reporting guidelines

Author(s): Melissa K. Sharp, Lorenzo Bertizzolo, Roser Rius, Elizabeth Wager, Guadalupe Gómez, Darko Hren
Published in: Journal of Clinical Epidemiology, Issue 116, 2019, Page(s) 26-35, ISSN 0895-4356
DOI: 10.1016/j.jclinepi.2019.07.019

Editors’ perspectives on the peer-review process in biomedical journals: protocol for a qualitative study

Author(s): Ketevan Glonti, Darko Hren
Published in: BMJ Open, Issue 8/10, 2018, Page(s) e020568, ISSN 2044-6055
DOI: 10.1136/bmjopen-2017-020568

Journal editors’ perspectives on the roles and tasks of peer reviewers in biomedical journals: a qualitative study

Author(s): Ketevan Glonti, Isabelle Boutron, David Moher, Darko Hren
Published in: BMJ Open, Issue 9/11, 2019, Page(s) e033421, ISSN 2044-6055
DOI: 10.1136/bmjopen-2019-033421

A cross-sectional bibliometric study showed suboptimal journal endorsement rates of STROBE and its extensions

Author(s): Melissa K. Sharp, Ružica Tokalić, Guadalupe Gómez, Elizabeth Wager, Douglas G. Altman, Darko Hren
Published in: Journal of Clinical Epidemiology, Issue 107, 2019, Page(s) 42-50, ISSN 0895-4356
DOI: 10.1016/j.jclinepi.2018.11.006

A scoping review on the roles and tasks of peer reviewers in the manuscript review process in biomedical journals

Author(s): Ketevan Glonti, Daniel Cauchi, Erik Cobo, Isabelle Boutron, David Moher, Darko Hren
Published in: BMC Medicine, Issue 17/1, 2019, ISSN 1741-7015
DOI: 10.1186/s12916-019-1347-0

A systematic review finds that spin or interpretation bias is abundant in evaluations of ovarian cancer biomarkers

Author(s): Mona Ghannad, Maria Olsen, Isabelle Boutron, Patrick M. Bossuyt
Published in: Journal of Clinical Epidemiology, Issue 116, 2019, Page(s) 9-17, ISSN 0895-4356
DOI: 10.1016/j.jclinepi.2019.07.011

Use of test accuracy study design labels in NICE’s diagnostic guidance

Author(s): M. Olsen, Z. Zhelev, H. Hunt, J. L. Peters, P. Bossuyt, C. Hyde
Published in: Diagnostic and Prognostic Research, Issue 3/1, 2019, ISSN 2397-7523
DOI: 10.1186/s41512-019-0062-9

Evaluation of an automatic article selection method for timelier updates of the Comet Core Outcome Set database

Author(s): Christopher R Norman, Elizabeth Gargon, Mariska M G Leeflang, Aurélie Névéol, Paula R Williamson
Published in: Database, Issue 2019, 2019, ISSN 1758-0463
DOI: 10.1093/database/baz109

Measuring the impact of screening automation on meta-analyses of diagnostic test accuracy

Author(s): Christopher R. Norman, Mariska M. G. Leeflang, Raphaël Porcher, Aurélie Névéol
Published in: Systematic Reviews, Issue 8/1, 2019, ISSN 2046-4053
DOI: 10.1186/s13643-019-1162-x

On improving the implementation of automatic updating of systematic reviews

Author(s): Anna Koroleva, Camila Olarte Parra, Patrick Paroubek
Published in: JAMIA Open, Issue 2/4, 2019, Page(s) 400-401, ISSN 2574-2531
DOI: 10.1093/jamiaopen/ooz044

Shortcomings in the evaluation of biomarkers in ovarian cancer: a systematic review


Published in: ISSN 1434-6621
DOI: 10.1515/cclm-2019-0038

The conduct and reporting of mediation analysis in recently published randomized controlled trials: results from a methodological systematic review

Author(s): Tat-Thang Vo, Cecilia Superchi, Isabelle Boutron, Stijn Vansteelandt
Published in: Journal of Clinical Epidemiology, Issue 117, 2020, Page(s) 78-88, ISSN 0895-4356
DOI: 10.1016/j.jclinepi.2019.10.001

Pre-emptive versus non pre-emptive kidney transplantation for end-stage kidney disease


Published in: ISSN 1465-1858
DOI: 10.1002/14651858.cd013073

Measuring semantic similarity of clinical trial outcomes using deep pre-trained language representations

Author(s): Anna Koroleva, Sanjay Kamath, Patrick Paroubek
Published in: Journal of Biomedical Informatics: X, Issue 4, 2019, Page(s) 100058, ISSN 2590-177X
DOI: 10.1016/j.yjbinx.2019.100058

Extracting relations between outcomes and significance levels in Randomized Controlled Trials (RCTs) publications

Author(s): Anna Koroleva, Patrick Paroubek
Published in: Proceedings of the 18th BioNLP Workshop and Shared Task, 2019, Page(s) 359-369
DOI: 10.18653/v1/W19-5038

Annotating Spin in Biomedical Scientific Publications : the case of Random Controlled Trials (RCTs)

Author(s): Anna Koroleva and Patrick Paroubek
Published in: Proceedings of the Eleventh International Conference on Language Resources and Evaluation (LREC 2018), 2018

Data Extraction and Synthesis in Systematic Reviews of Diagnostic Test Accuracy: A Corpus for Automating and Evaluating the Process

Author(s): Norman, Christopher; Leeflang, Mariska; Névéol, Aurélie;
Published in: Amia ... Annual Symposium proceedings 2018, 2018, Page(s) 817–826

Automating Document Discovery in the Systematic Review Process: How to Use Chaff to Extract Wheat

Author(s): Norman, Christopher; Leeflang, Mariska; Zweigenbaum, Pierre; Névéol, Aurélie
Published in: International Conference on Language Resources and Evaluation, May 2018, Miyazaki, Japan, Issue 1, 2018
DOI: 10.5281/zenodo.1173076

A distantly supervised dataset for automated data extraction from diagnostic studies

Author(s): Norman, Christopher; Leeflang, Mariska; Spijker, René; Kanoulas, Evangelos; Névéol, Aurélie
Published in: Proceedings of the 18th BioNLP Workshop and Shared Task, Issue 7, 2019, Page(s) 105–114
DOI: 10.5281/zenodo.3678084

Automatic detection of inadequate claims in biomedical articles: first steps

Author(s): Anna, Koroleva; Patrick, Paroubek
Published in: WORKSHOP on Curative Power of MEdical DAta, 2017
DOI: 10.5281/zenodo.1164160

Tri Automatique de la Littérature pour les Revues Systématiques

Author(s): Norman, Christopher; Leeflang, Mariska; Zweigenbaum, Pierre; Névéol, Aurélie
Published in: Actes de TALN 2017, volume 2: articles courts, 2017, Page(s) 234-241
DOI: 10.5281/zenodo.887605

Vers la détection automatique des affirmations inappropriées dans les articles scientifiques

Author(s): Koroleva Anna
Published in: 19e Rencontres des Étudiants Chercheurs en Informatique pour le Traitement Automatique des Langues (RECITAL),, 2017
DOI: 10.5281/zenodo.887673

Demonstrating ConstruKT, a text annotation toolkit for generalized linguistic contructions applied to communication spin

Author(s): Koroleva Anna; Paroubek Patrick
Published in: Conference proceedings of the 9th Language and Technology Conference (LTC 2019), 2019
DOI: 10.5281/zenodo.3608725