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CORDIS - EU research results
CORDIS

implementAtion anD OPeration of the gateway for healTh into BBMRI-ERIC

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Stakeholder Forum Meeting Report (opens in new window)

Stakeholder Forum Meeting Report two yearly events M11 and M23

Patient-related data for colorectal cancer samples (opens in new window)
Security and privacy architecture (opens in new window)
Guideline for biobanks to comply with EU in vitro diagnostics regulation (opens in new window)
List of qualified EU biobanks (opens in new window)
Report of the Pilot Study (opens in new window)
Final report of WP8 (opens in new window)
Best practice document for optimal usage of omics technologies for biomarkers (opens in new window)

Best practice document for optimal usage of omics technologies for biomarkers lead by BBMRI.fi

Report on educational and training events and tools (opens in new window)
Report on return to investment models (opens in new window)
Report on harmonised cost recovery process (opens in new window)
Reports of the Advisory Committee meetings (opens in new window)

Reports of the Advisory Committee meetings - due M7 and M19

Procedure and checklist for on-site visit evaluation (opens in new window)
Reports on the access procedure (opens in new window)

Reports on the access procedure, M24 and 36

Implementation of performance, outcome and impact indicators (opens in new window)
Governance model for the sustainability of RD biobanks (opens in new window)
Report of Country mapping in the field of biobanking (opens in new window)
Harmonised access procedure to samples and data (opens in new window)
Performance indicators for biobanks (opens in new window)
Harmonised quality standards (opens in new window)
Data set on samples from colorectal cancer patients (opens in new window)
List of data, services, technologies/technologic platforms for each Country (opens in new window)
Reports from meetings of the coordination activity (opens in new window)

Yearly reports from meetings of the coordination activity M12, 24, 36

Booklet describing processes and tools in place for the operation of the Common Service ELSI for its users (opens in new window)

Booklet describing processes and tools in place for the operation of the Common Service ELSI for its users. M6; this will be updated at M24 and M36

Ontology-based toolset for mapping of the biobanking terminologies (opens in new window)

Ontology-based toolset for mapping of the biobanking terminologies. First revision Mo 18. Second Revision M30.

Implementation of the RD Common Service (opens in new window)
Ethical Governance Framework and ethics check for ADOPT BBMRI-ERIC (opens in new window)

Specify Ethical Governance Framework and adopt BBMRI-ERIC ethics check for ADOPT BBMRI-ERIC

Data matrix for characterisation of diseases (opens in new window)
Letter of Interest of founding members of a Biomarker Expert Centre (opens in new window)

Letter of Interest of founding members of a Biomarker Expert Centre Lead by BBMRI.at

Registry/biobank support service/ Help-desk facility (opens in new window)
Work towards formal certification according to relevant standards (opens in new window)

Formal certification according to relevant standards

Implementation of the BBMRI-ERIC architecture and database (opens in new window)

Implementation of the BBMRI-ERIC architecture and database. Second revision, following two-step design and implementation due M12 and 36.

Final report (opens in new window)
RD Biobank section in BBMRI-ERIC catalogue (opens in new window)
User interface for collection of the colon cancer cases and database (opens in new window)
General annual reports (opens in new window)

General annual reports - due month 13 and 25

Biobank connector specification and reference connector implementation (opens in new window)
Annual workshops & reports and possible consensus statements on specific topics (opens in new window)

Annual workshops & reports and possible consensus statements on specific topics, to be defined in collaboration with WP2, 3, 4 and 7 (M12, then yearly) expected focus year 1 : Data protection and access

Collaboration agreement with other ESFRI-BMS research infrastructures, IMI and national biomarker programs (opens in new window)
Implementation of new ELSI tools, notably procedure to enhance public debate (opens in new window)
Setup of all bodies like the international Advisory Committee, etc. (opens in new window)
Operational platform for sharing experience (opens in new window)

Operational platform for sharing experience: Meeting with representatives of national/regional ethics committees dealing with biobanking research to share experience

IT-tool for monitoring compliance of biobanks with CEN TS for molecular diagnostics examinations (opens in new window)

IT-tool for monitoring compliance of biobanks with CEN TS for molecular diagnostics examinations - lead by BBMRI.fi

Consolidated registry of BBMRI-ERIC biobanks (opens in new window)

Publications

Guideline for Biobanks to comply with EU in vitro diagnostics regulation (opens in new window)

Author(s): Anu Jalanko, Andrea Wutte, Outi Törnwall and Kurt Zatlukal
Published in: 2017
Publisher: BBMRI-ERIC
DOI: 10.5281/zenodo.2597993

Harmonised Access Procedure to Samples and Data (opens in new window)

Author(s): Georges Dagher; Petr Holub; Michael Hummel; Anu Jalanko; Outi Törnwall; Kaisa Silander; Marialuisa Lavitrano; Kurt Zatloukal; Mats Hansson; Michaela Th. Mayrhofer; Maimuna Mendy; Philip Quinlan; Irene Schlünder
Published in: 2016
Publisher: BBMRI-ERIC
DOI: 10.5281/zenodo.823013

Best practice document for optimal usage of omics  technologies for biomarkers (opens in new window)

Author(s): Anu Jalanko, Iiro Hämäläinen, Marialuisa Lavitrano, Kurt  Zatloukal , Gert‐Jan van Ommen, Michael Hisbergues,  Kyriacos Kyriacou, Annelies Debucquoy, Outi Törnwall
Published in: 2017
Publisher: BBMRI-ERIC
DOI: 10.5281/zenodo.2598093

Ethical Governance Framework and Ethics Check for ADOPT BBMRI-­‐ERIC (opens in new window)

Author(s): Anne Cambon-Thomsen
Published in: 2016
Publisher: BBMRI-ERIC
DOI: 10.5281/zenodo.823029

Procedure and checklist for on-­site visit evaluation (opens in new window)

Author(s): Marialuisa  Lavitrano,  Outi Törnwall
Published in: 2016
Publisher: BBMRI-ERIC
DOI: 10.5281/zenodo.2598072

Provision of a Terminology Service for Semantic Ontology Mapping – First Toolset Prototype (opens in new window)

Author(s): Mate, Sebastian; Schüttler, Christina; Bott, Katrin; Knell, Christian; Kadioglu, Dennis; Eklund, Niina; Silander, Kaisa; Prokosch, Hans-Ulrich
Published in: 2017
Publisher: BBMRI-ERIC
DOI: 10.5281/zenodo.844009

IT-­‐tool for monitoring compliance of biobanks with CEN/TS for molecular diagnostics examinations (opens in new window)

Author(s): Kurt Zatloukal, Cornelia Stumptner, Christoph Schreiner
Published in: Issue 1, 2017
Publisher: Zenodo
DOI: 10.5281/zenodo.2598076

Rulemaking in the US (opens in new window)

Author(s): Hilde Eikemo, Berge Solberg
Published in: 2018
Publisher: BBMRI-ERIC
DOI: 10.5281/zenodo.1305380

BBMRI-ERIC Directory Manual for data managers (opens in new window)

Author(s): David van Enckevort
Published in: Issue 1, 2019
Publisher: BBMRI-ERIC
DOI: 10.5281/zenodo.3452137

How-to Guide: Governance in Biobanking (opens in new window)

Author(s): Goisauf, Melanie; Durnová, Anna; Grewal, Jasjote; Mayrhofer, Michaela
Published in: Issue 1, 2019
Publisher: BBMRI-ERIC
DOI: 10.5281/zenodo.3516948

Handbook for biobanks to meet users' needs for biomarker discovery, development and validation (opens in new window)

Author(s): Jalanko, Anu; Simell, Birgit; Silander, Kaisa; Wutte, Andrea; Zatloukal, Kurt; Metspalu, Andres; Hveem, Kristian; Lavitrano, Marialuisa
Published in: Issue 1, 2018
Publisher: BBMRI-ERIC
DOI: 10.5281/zenodo.3506863

Consolidated Registry of BBMRI-ERIC Biobanks (opens in new window)

Author(s): Petr Holub; David van Enckevort; Robert Reihs; Morris Swertz; Heimo Müller; Araceli DiezFraile; Michael Hummel; Jan-Eric Litton
Published in: Issue 1, 2016
Publisher: BBMRI-ERIC through Zenodo
DOI: 10.5281/zenodo.273550

Implementation of the BBMRI-ERIC architecture and database (opens in new window)

Author(s): Diogo Alexandre; Martin Lablans; Frank Ückert; Petr Holub; Michael Hummel; Morris Swertz; Rumyana Proynova; David van Enckevort; Jonathan Jetten
Published in: Issue 1, 2016
Publisher: BBMRI-ERIC
DOI: 10.5281/zenodo.273766

Security and Privacy Architecture (opens in new window)

Author(s): Petr Holub; Common Service IT
Published in: Issue 1, 2016
Publisher: BBMRI-ERIC through Zenodo
DOI: 10.5281/zenodo.159444

Performance Indicators for BBMRI-ERIC (opens in new window)

Author(s): Holub, Petr; Litton, Jan-Eric; Wutte, Andrea; Törnwall, Outi; Mayrhofer, Michaela Th.; Management Committee of BBMRI-ERIC
Published in: Issue 1, 2016
Publisher: BBMRI-ERIC through Zenodo
DOI: 10.5281/zenodo.159416

Overview Document on Already Existing Data Harmonisation Tools (opens in new window)

Author(s): Sebastian Mate; Ines Leb; Christina Schüttler; Kaisa Silander; Timo Miettinen; Juha Knuuttila; Niina Eklund; Hans-Ulrich Prokosch
Published in: 2016
Publisher: BBMRI-ERIC
DOI: 10.5281/zenodo.165775

Report:Ethics Review of European Biobank Research: Towards Mutual RECognition?

Author(s): BBMRI-ERIC, BBMRI-LPC, B3Africa
Published in: 2016
Publisher: BBMRI-ERIC

The EU General Data Protection Regulation: Answers to Frequently Asked Questions, Updated version 2.0 (opens in new window)

Author(s): BBMRI-ERIC Common Service ELSI
Published in: 2017
Publisher: BBMRI-ERIC
DOI: 10.5281/zenodo.3473120

Sharing and access to data and human biospecimens for the benefit of patients -Towards a BBMRI-ERIC Policy

Author(s): MG Hansson, MK Dahlin and HC Howard
Published in: 2016
Publisher: BBMRI-ERIC

Significant Locus and Metabolic Genetic Correlations Revealed in Genome-Wide Association Study of Anorexia Nervosa (opens in new window)

Author(s): Laramie Duncan, Zeynep Yilmaz, Helena Gaspar, Raymond Walters, Jackie Goldstein, Verneri Anttila, Brendan Bulik-Sullivan, Stephan Ripke, Laura Thornton, Anke Hinney, Mark Daly, Patrick F. Sullivan, Eleftheria Zeggini, Gerome Breen, Cynthia M. Bulik, Laramie Duncan, Zeynep Yilmaz, Héléna Gaspar, Raymond Walters, Jackie Goldstein, Verneri Anttila, Brendan Bulik-Sullivan, Stephan Ripke, Roger Adan,
Published in: American Journal of Psychiatry, Issue 174/9, 2017, Page(s) 850-858, ISSN 0002-953X
Publisher: American Psychiatric Publishing, Inc.
DOI: 10.1176/appi.ajp.2017.16121402

Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mechanisms (opens in new window)

Author(s): Michael H. Guo, Satish K. Nandakumar, Jacob C. Ulirsch, Seyedeh M. Zekavat, Jason D. Buenrostro, Pradeep Natarajan, Rany M. Salem, Roberto Chiarle, Mario Mitt, Mart Kals, Kalle Pärn, Krista Fischer, Lili Milani, Reedik Mägi, Priit Palta, Stacey B. Gabriel, Andres Metspalu, Eric S. Lander, Sekar Kathiresan, Joel N. Hirschhorn, Tõnu Esko, Vijay G. Sankaran
Published in: Proceedings of the National Academy of Sciences, Issue 114/3, 2017, Page(s) E327-E336, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.1619052114

Trans-ethnic meta-regression of genome-wide association studies accounting for ancestry increases power for discovery and improves fine-mapping resolution (opens in new window)

Author(s): Reedik Mägi, Momoko Horikoshi, Tamar Sofer, Anubha Mahajan, Hidetoshi Kitajima, Nora Franceschini, Mark I. McCarthy, Andrew P. Morris
Published in: Human Molecular Genetics, Issue 26/18, 2017, Page(s) 3639-3650, ISSN 0964-6906
Publisher: Oxford University Press
DOI: 10.1093/hmg/ddx280

Ranking and characterization of established BMI and lipid associated loci as candidates for gene-environment interactions (opens in new window)

Author(s): Dmitry Shungin, Wei Q. Deng, Tibor V. Varga, Jian'an Luan, Evelin Mihailov, Andres Metspalu, Andrew P. Morris, Nita G. Forouhi, Cecilia Lindgren, Patrik K. E. Magnusson, Nancy L. Pedersen, Göran Hallmans, Audrey Y. Chu, Anne E. Justice, Mariaelisa Graff, Thomas W. Winkler, Lynda M. Rose, Claudia Langenberg, L. Adrienne Cupples, Paul M. Ridker, Nicholas J. Wareham, Ken K. Ong, Ruth J. F. Loos, Dan
Published in: PLOS Genetics, Issue 13/6, 2017, Page(s) e1006812, ISSN 1553-7404
Publisher: PLoS Genet. 2017 Jun; 13(6): e1006812.
DOI: 10.1371/journal.pgen.1006812

Enhancing Reuse of Data and Biological Material in Medical Research: From FAIR to FAIR-Health (opens in new window)

Author(s): Petr Holub, Florian Kohlmayer, Fabian Prasser, Michaela Th. Mayrhofer, Irene Schlünder, Gillian M. Martin, Sara Casati, Lefteris Koumakis, Andrea Wutte, Łukasz Kozera, Dominik Strapagiel, Gabriele Anton, Gianluigi Zanetti, Osman Ugur Sezerman, Maimuna Mendy, Dalibor Valík, Marialuisa Lavitrano, Georges Dagher, Kurt Zatloukal, GertJan B. van Ommen, Jan-Eric Litton
Published in: Biopreservation and Biobanking, Issue 16/2, 2018, Page(s) 97-105, ISSN 1947-5535
Publisher: Mary Ann Liebert Inc.
DOI: 10.1089/bio.2017.0110

Improved imputation accuracy of rare and low-frequency variants using population-specific high-coverage WGS-based imputation reference panel (opens in new window)

Author(s): Mario Mitt, Mart Kals, Kalle Pärn, Stacey B Gabriel, Eric S Lander, Aarno Palotie, Samuli Ripatti, Andrew P Morris, Andres Metspalu, Tõnu Esko, Reedik Mägi, Priit Palta
Published in: European Journal of Human Genetics, Issue 25/7, 2017, Page(s) 869-876, ISSN 1018-4813
Publisher: Natue Publishing Group
DOI: 10.1038/EJHG.2017.51

Biobank sustainability: current status and future prospects (opens in new window)

Author(s): Marika Doucet, Martin Yuille, Luke Georghiou, Georges Dagher
Published in: Journal of Biorepository Science for Applied Medicine, Issue Volume 5, 2017, Page(s) 1-7, ISSN 2253-1785
Publisher: Dove Press
DOI: 10.2147/bsam.s100899

Data in question: A survey of European biobank professionals on ethical, legal and societal challenges of biobank research (opens in new window)

Author(s): Melanie Goisauf, Gillian Martin, Heidi Beate Bentzen, Isabelle Budin-Ljøsne, Lars Ursin, Anna Durnová, Liis Leitsalu, Katharine Smith, Sara Casati, Marialuisa Lavitrano, Deborah Mascalzoni, Martin Boeckhout, Michaela Th. Mayrhofer
Published in: PLOS ONE, Issue 14/9, 2019, Page(s) e0221496, ISSN 1932-6203
Publisher: Public Library of Science
DOI: 10.1371/journal.pone.0221496

Mind the Gap: From Tool to Knowledge Base (opens in new window)

Author(s): Michaela Th. Mayrhofer and Irene Schlünder
Published in: Biopreservation and Biobanking, Issue Volume 16, Issue 6, 2018, ISSN 1947-5535
Publisher: Mary Ann Liebert Inc.
DOI: 10.1089/bio.2018.0018

BBMRI-ERIC Directory: 515 Biobanks with Over 60 Million Biological Samples (opens in new window)

Author(s): Petr Holub, Morris Swertz, Robert Reihs, David van Enckevort, Heimo Müller, Jan-Eric Litton
Published in: Biopreservation and Biobanking, Issue 14/6, 2016, Page(s) 559-562, ISSN 1947-5535
Publisher: Mary Ann Liebert Inc.
DOI: 10.1089/bio.2016.0088

A Decentralized IT Architecture for Locating and Negotiating Access to Biobank Samples (opens in new window)

Author(s): Rumyana Proynova, Diogo Alexandre, Martin Lablans, David Van Enckevort, Sebastian Mate, Niina Eklund, Kaisa Silander, Michael Hummel, Petr Holub, Frank Ückert
Published in: Studies in Health Technology and Informatics, 2017
Publisher: German Biobank Node
DOI: 10.3233/978-1-61499-808-2-75

Sharing and access to data and human biospecimens for the benefit of patients – Towards a BBMRI-ERIC Policy: ELSI Workshop (opens in new window)

Author(s): Hansson, Mats G.; Kindstrom Dahlin, Moa; Howard, Heidi Carmen
Published in: 2015
Publisher: BBMRI-ERIC
DOI: 10.5281/zenodo.3473050

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