Innovative Management of Genetic Resources

Deliverables

Project flyer at year 3 will show updates from all WPs with main messages regarding new methods for gene banking and for incorporating genomic data into gene bank management

Project newsletter n°1.

A yearly project newsletter year 1 with major objectives list of partners communicate on D11 D21 D41 and announce postgraduate courses

Project newsletter n°2.

A yearly project newsletter year 2 will communicate on D12 D22 D23 D31 D32 D42 D51 D61 and announce training sessions

Project flyer n°1.

First project flyer will provide information on the project for the general public and the stakeholders to improve the notoriety of IMAGE

Project newsletter n°3.

A yearly project newsletter year 3 will communicate on D13 D14 D24 D25 D33 D43 D44 D45 D62 D63 and announce final conference

Project website.

Project website providing information on the partners the work programme the conferences the publications training and pointing towards the data portal

Project newsletter n°4.

A yearly project newsletter year 4 will communicate on D15 D26 D27 D34 D47 D54 D55 D64 D65 D66 D714 and present the main conclusions from the project

Demonstration example of integration of gene bank material into an in-situ chicken breeding line.

Results from a case study in chicken assessing the efficiency of the integration of gene bank material into an insitu chicken breeding line to transfer a major gene affecting product quality egg shell color

Data sharing with other major research initiatives in livestock genomics to allow evaluating genetic resources in a species-wide variation context.

A list of data sets shared with other major research initiatives in livestock genomics to allow evaluating genetic resources in a specieswide variation context

International conference on animal genetic resources.

International conference on animal genetic resources will feature European and non European speakers present new data and methods produced by IMAGE and identify new challenges and research needs

Compliance to the EU regulation 511/2014 for access and benefit sharing related to the use of genetic resources.

The EU regulation requests that research on genetic resources taking place after october 2014 has to comply with national laws if any of provider countries that have ratified the Nagoya Protocol This milestone will gather the proofs of due diligence for access to genetic resources by partners of IMAGEAs update additional certificates will be provided on a yearly basis if justified by the ongoing research

Improved acceptance of technological innovation by the stakeholders up to the general public.

A report describing the conditions and steps to follow in order to improve the acceptance of technological innovation from the stakeholders to the general public

Ethical advice for the choice of breeds to be conserved in gene banks

A report from the discussions with the stakeholders

Guidelines for management of gene banks.

Guidelines for management of gene banks will address sampling issues cryoconservation protocols association of data to gene bank materials methods to reintroduce gene bank materials into breeding programmes

Publications

Natriuretic peptides appeared after their receptors in vertebrates

Author(s): Anna Grandchamp, Shifa Tahir, Philippe Monget
Published in: BMC Evolutionary Biology, Issue 19/1, 2019, ISSN 1471-2148
Publisher: BioMed Central
DOI: 10.1186/s12862-019-1517-x

Reviving rare chicken breeds using genetically engineered sterility in surrogate host birds

Author(s): Mark E. Woodcock, Almas A. Gheyas, Andrew S. Mason, Sunil Nandi, Lorna Taylor, Adrian Sherman, Jacqueline Smith, Dave W. Burt, Rachel Hawken, Michael J. McGrew
Published in: Proceedings of the National Academy of Sciences, Issue 116/42, 2019, Page(s) 20930-20937, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.1906316116

Functional Aspects of Seminal Plasma in Bird Reproduction

Author(s): Julian Santiago-Moreno, Elisabeth Blesbois
Published in: International Journal of Molecular Sciences, Issue 21/16, 2020, Page(s) 5664, ISSN 1422-0067
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms21165664

Amniotic microvesicles impact hatching and pregnancy percentages of in vitro bovine embryos and blastocyst microRNA expression versus in vivo controls

Author(s): Anna Lange-Consiglio, Barbara Lazzari, Flavia Pizzi, Antonella Idda, Fausto Cremonesi, Emanuele Capra
Published in: Scientific Reports, Issue 10/1, 2020, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-019-57060-z

The seminal acrosin‐inhibitor ClTI1/SPINK2 is a fertility‐associated marker in the chicken

Author(s): Aurore Thélie, Sophie Rehault‐Godbert, Jean‐Claude Poirier, Marina Govoroun, Sophie Fouchécourt, Elisabeth Blesbois
Published in: Molecular Reproduction and Development, Issue 86/7, 2019, Page(s) 762-775, ISSN 1040-452X
Publisher: John Wiley & Sons Inc.
DOI: 10.1002/mrd.23153

Genes Involved in Drosophila melanogaster Ovarian Function Are Highly Conserved Throughout Evolution

Author(s): Sebastien Elis, Alice Desmarchais, Emilie Cardona, Sophie Fouchecourt, Rozenn Dalbies-Tran, Thaovi Nguyen, Violette Thermes, Virginie Maillard, Pascal Papillier, Svetlana Uzbekova, Julien Bobe, Jean-Louis Couderc, Philippe Monget
Published in: Genome Biology and Evolution, Issue 10/10, 2018, Page(s) 2629-2642, ISSN 1759-6653
Publisher: Oxford University Press
DOI: 10.1093/gbe/evy158

Genomic Tools for the Conservation and Genetic Improvement of a Highly Fragmented Breed—The Ramo Grande Cattle from the Azores

Author(s): Andreia J. Amaral, Ana L. Pavão, Luis T. Gama
Published in: Animals, Issue 10/6, 2020, Page(s) 1089, ISSN 2076-2615
Publisher: MDPI
DOI: 10.3390/ani10061089

The Quest for Genes Involved in Adaptation to Climate Change in Ruminant Livestock

Author(s): Matilde Maria Passamonti, Elisa Somenzi, Mario Barbato, Giovanni Chillemi, Licia Colli, Stéphane Joost, Marco Milanesi, Riccardo Negrini, Monia Santini, Elia Vajana, John Lewis Williams, Paolo Ajmone-Marsan
Published in: Animals, Issue 11/10, 2021, Page(s) 2833, ISSN 2076-2615
Publisher: MDPI
DOI: 10.3390/ani11102833

Rationalizing ex situ collection of reproductive materials for endangered livestock breed conservation

Author(s): Rafael De Oliveira Silva, Oscar Cortes Gardyn, Sipke-Joost Hiemstra, Joao G. Oliveira Marques, Michèle Tixier-Boichard, Dominic Moran
Published in: Ecological Economics, Issue 181, 2021, Page(s) 106916, ISSN 0921-8009
Publisher: Elsevier BV
DOI: 10.1016/j.ecolecon.2020.106916

Sucrose increases the quality and fertilizing ability of cryopreserved chicken sperms in contrast to raffinose

Author(s): Pachara Thananurak, Napapach Chuaychu-noo, Aurore Thélie, Yupin Phasuk, Thevin Vongpralub, Elisabeth Blesbois
Published in: Poultry Science, Issue 98/9, 2019, Page(s) 4161-4171, ISSN 0032-5791
Publisher: Poultry Science Association Inc.
DOI: 10.3382/ps/pez196

Detection of a Frameshift Deletion in the SPTBN4 Gene Leads to Prevention of Severe Myopathy and Postnatal Mortality in Pigs

Author(s): Martijn F. L. Derks, Barbara Harlizius, Marcos S. Lopes, Sylvia W. M. Greijdanus-van der Putten, Bert Dibbits, Kimberley Laport, Hendrik-Jan Megens, Martien A. M. Groenen
Published in: Frontiers in Genetics, Issue 10, 2019, ISSN 1664-8021
Publisher: Frontiers Media
DOI: 10.3389/fgene.2019.01226

Ex situ and in situ data for endangered livestock breeds in Spain

Author(s): Rafael De Oliveira Silva, Oscar Cortes Gardyn, Sipke-Joost Hiemstra, Joao G. Oliveira Marques, Michèle Tixier-Boichard, Dominic Moran
Published in: Data in Brief, Issue 35, 2021, Page(s) 106805, ISSN 2352-3409
Publisher: Elsevier BV
DOI: 10.1016/j.dib.2021.106805

The Oviductal Extracellular Vesicles’ RNA Cargo Regulates the Bovine Embryonic Transcriptome

Author(s): Stefan Bauersachs, Pascal Mermillod, Carmen Almiñana
Published in: International Journal of Molecular Sciences, Issue 21/4, 2020, Page(s) 1303, ISSN 1422-0067
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms21041303

Chicken semen cryopreservation and use for the restoration of rare genetic resources

Author(s): Aurore Thélie, Amélie Bailliard, François Seigneurin, Tatiana Zerjal, Michèle Tixier-Boichard, Elisabeth Blesbois
Published in: Poultry Science, 2018, ISSN 0032-5791
Publisher: Poultry Science Association Inc.
DOI: 10.3382/ps/pey360

Access to pasture in an outdoor housing system affects welfare indicators and improves rooster sperm quality in two native Mediterranean breeds

Author(s): J Santiago-Moreno, M G Gil, S G Dávila, J L Campo, C Castaño, A Toledano-Díaz, M T Prieto, E Blesbois
Published in: Poultry Science, Issue Volume 97, Issue 12, December 2018, 2018, Page(s) 4433–4441, ISSN 0032-5791
Publisher: Poultry Science Association Inc.
DOI: 10.3382/ps/pey299

Comparison of the MicroRNA Expression Profiles of Male and Female Avian Primordial Germ Cell Lines

Author(s): Bence Lázár, Mahek Anand, Roland Tóth, Eszter Patakiné Várkonyi, Krisztina Liptói, Elen Gócza
Published in: Stem Cells International, Issue 2018, 2018, Page(s) 1-17, ISSN 1687-966X
Publisher: Hindawi
DOI: 10.1155/2018/1780679

An improved vitrification protocol for equine immature oocytes, resulting in a first live foal

Author(s): N. Ortiz-Escribano, O. Bogado Pascottini, H. Woelders, L. Vandenberghe, C. De Schauwer, J. Govaere, E. Van den Abbeel, T. Vullers, C. Ververs, K. Roels, M. Van De Velde, A. Van Soom, K. Smits
Published in: Equine Veterinary Journal, Issue 50/3, 2018, Page(s) 391-397, ISSN 0425-1644
Publisher: Equine Veterinary Journal Ltd.
DOI: 10.1111/evj.12747

Value of the Dutch Holstein Friesian germplasm collection to increase genetic variability and improve genetic merit

Author(s): H.P. Doekes, R.F. Veerkamp, P. Bijma, S.J. Hiemstra, J. Windig
Published in: Journal of Dairy Science, Issue 101/11, 2018, Page(s) 10022-10033, ISSN 0022-0302
Publisher: American Dairy Science Association
DOI: 10.3168/jds.2018-15217

Freezing poultry semen; effects of cpa concentration x cooling rate; other factors.

Author(s): Henri Woelders, Agnes A.C. de Wit, Sipke Joost Hiemstra
Published in: Cryobiology, Issue 85, 2018, Page(s) 163, ISSN 0011-2240
Publisher: Academic Press
DOI: 10.1016/j.cryobiol.2018.10.169

Trends in genome-wide and region-specific genetic diversity in the Dutch-Flemish Holstein–Friesian breeding program from 1986 to 2015

Author(s): Harmen P. Doekes, Roel F. Veerkamp, Piter Bijma, Sipke J. Hiemstra, Jack J. Windig
Published in: Genetics Selection Evolution, Issue 50/1, 2018, Page(s) 1-16, ISSN 1297-9686
Publisher: BioMed Central Ltd
DOI: 10.1186/s12711-018-0385-y

Enhancement of chicken primordial germ cell in vitro maintenance using an automated cell image analyser

Author(s): Mahek Anand, Bence Lázár, Roland Tóth, Emőke Páll, Eszter Patakiné Várkonyi, Krisztina Liptói, László Homolya, Zoltán Hegyi, András Hidas, Elen Gócza
Published in: Acta Veterinaria Hungarica, Issue 66/4, 2018, Page(s) 518-529, ISSN 0236-6290
Publisher: Akademiai Kiado
DOI: 10.1556/004.2018.046

Successful chilling of red-legged partridge (Alectoris rufa) sperm for use in artificial insemination

Author(s): J Santiago-Moreno, C Castaño, A Toledano-Díaz, M. C Esteso, A López-Sebastián, S Villaverde-Morcillo, S. G Dávila, M. G Gil, E Blesbois
Published in: Poultry Science, Issue 96/11, 2017, Page(s) 4068-4074, ISSN 0032-5791
Publisher: Poultry Science Association Inc.
DOI: 10.3382/ps/pex176

Optimizing ex situ genetic resource collections for European livestock conservation

Author(s): Rafael De Oliveira Silva, Bouda Vosough Ahmadi, Sipke Joost Hiemstra, Dominic Moran
Published in: Journal of Animal Breeding and Genetics, Issue Volume136, Issue1, 2018, Page(s) 63-73, ISSN 0931-2668
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/jbg.12368

Seminal plasma amino acid profile in different breeds of chicken: Role of seminal plasma on sperm cryoresistance

Author(s): Julián Santiago-Moreno, Berenice Bernal, Serafín Pérez-Cerezales, Cristina Castaño, Adolfo Toledano-Díaz, Milagros C. Esteso, Alfonso Gutiérrez-Adán, Antonio López-Sebastián, María G. Gil, Henri Woelders, Elisabeth Blesbois
Published in: PLOS ONE, Issue 14/1, 2019, Page(s) e0209910, ISSN 1932-6203
Publisher: Public Library of Science
DOI: 10.1371/journal.pone.0209910

Simulations of osmotic events in vitrification of equine oocytes and porcine embryos

Author(s): Henri Woelders, Florence Guignot, Nerea Ortiz-Escribano, Ann van Soom, Katrien Smits
Published in: Cryobiology, Issue 85, 2018, Page(s) 154-155, ISSN 0011-2240
Publisher: Academic Press
DOI: 10.1016/j.cryobiol.2018.10.136

The effects of recent changes in breeding preferences on maintaining traditional Dutch chicken genomic diversity

Author(s): Chiara Bortoluzzi, Richard P. M. A. Crooijmans, Mirte Bosse, Sipke Joost Hiemstra, Martien A. M. Groenen, Hendrik-Jan Megens
Published in: Heredity, Issue 121/6, 2018, Page(s) 564-578, ISSN 0018-067X
Publisher: Nature Publishing Group
DOI: 10.1038/s41437-018-0072-3

A Novel Loss-of-Function Variant in Transmembrane Protein 263 (TMEM263) of Autosomal Dwarfism in Chicken

Author(s): Zhou Wu, Martijn F. L. Derks, Bert Dibbits, Hendrik-Jan Megens, Martien A. M. Groenen, Richard P. M. A. Crooijmans
Published in: Frontiers in Genetics, Issue 9, 2018, Page(s) Article 193, ISSN 1664-8021
Publisher: Frontiers Media
DOI: 10.3389/fgene.2018.00193

An evolutionary approach to recover genes predominantly expressed in the testes of the zebrafish, chicken and mouse

Author(s): Sophie Fouchécourt, Floriane Picolo, Sébastien Elis, Charlotte Lécureuil, Aurore Thélie, Marina Govoroun, Mégane Brégeon, Pascal Papillier, Jean-Jacques Lareyre, Philippe Monget
Published in: BMC Evolutionary Biology, Issue 19/1, 2019, ISSN 1471-2148
Publisher: BioMed Central
DOI: 10.1186/s12862-019-1462-8

MoBPS - Modular Breeding Program Simulator

Author(s): Torsten Pook, Martin Schlather, Henner Simianer
Published in: "G3&#58; Genes|Genomes|Genetics", Issue 10/6, 2020, Page(s) 1915-1918, ISSN 2160-1836
Publisher: Genetics Society of America
DOI: 10.1534/g3.120.401193

Sephadex filtration as successful alternative to density-gradient centrifugation procedures for ram sperm selection with improved kinetics

Author(s): D.A. Galarza, A. López-Sebastián, H. Woelders, E. Blesbois, J. Santiago-Moreno
Published in: Animal Reproduction Science, Issue 192, 2018, Page(s) 261-270, ISSN 0378-4320
Publisher: Elsevier BV
DOI: 10.1016/j.anireprosci.2018.03.022

Cryoconservation of Animal Genetic Resources in Europe and Two African Countries: A Gap Analysis

Author(s): Gregoire Leroy, Paul Boettcher, Badi Besbes, Coralie Danchin-Burge, Roswitha Baumung, Sipke J. Hiemstra
Published in: Diversity, Issue 11/12, 2019, Page(s) 240, ISSN 1424-2818
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/d11120240

A survey of functional genomic variation in domesticated chickens

Author(s): Martijn F. L. Derks, Hendrik-Jan Megens, Mirte Bosse, Jeroen Visscher, Katrijn Peeters, Marco C. A. M. Bink, Addie Vereijken, Christian Gross, Dick de Ridder, Marcel J. T. Reinders, Martien A. M. Groenen
Published in: Genetics Selection Evolution, Issue 50/1, 2018, ISSN 1297-9686
Publisher: Springer Nature
DOI: 10.1186/s12711-018-0390-1

Characterization of Genetic Diversity Conserved in the Gene Bank for Dutch Cattle Breeds

Author(s): Anouk E. van Breukelen, Harmen P. Doekes, Jack J. Windig, Kor Oldenbroek
Published in: Diversity, Issue 11/12, 2019, Page(s) 229, ISSN 1424-2818
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/d11120229

Loss of function mutations in essential genes cause embryonic lethality in pigs

Author(s): Martijn F. L. Derks, Arne B. Gjuvsland, Mirte Bosse, Marcos S. Lopes, Maren van Son, Barbara Harlizius, Beatrice F. Tan, Hanne Hamland, Eli Grindflek, Martien A. M. Groenen, Hendrik-Jan Megens
Published in: PLOS Genetics, Issue 15/3, 2019, Page(s) e1008055, ISSN 1553-7404
Publisher: University of Bern
DOI: 10.1371/journal.pgen.1008055

Impact of merging commercial breeding lines on the genetic diversity of Landrace pigs

Author(s): Ina Hulsegge, Mario Calus, Rita Hoving-Bolink, Marcos Lopes, Hendrik-Jan Megens, Kor Oldenbroek
Published in: Genetics Selection Evolution, Issue 51/1, 2019, ISSN 1297-9686
Publisher: Springer Verlag
DOI: 10.1186/s12711-019-0502-6

Two-step accelerating freezing protocol yields a better motility, membranes and DNA integrities of thawed ram sperm than three-steps freezing protocols

Author(s): Diego A. Galarza, Antonio López-Sebastián, Henri Woelders, Elizabeth Blesbois, Julián Santiago-Moreno
Published in: Cryobiology, Issue 91, 2019, Page(s) 84-89, ISSN 0011-2240
Publisher: Academic Press
DOI: 10.1016/j.cryobiol.2019.10.007

Balancing selection on a recessive lethal deletion with pleiotropic effects on two neighboring genes in the porcine genome

Author(s): Martijn F. L. Derks, Marcos S. Lopes, Mirte Bosse, Ole Madsen, Bert Dibbits, Barbara Harlizius, Martien A. M. Groenen, Hendrik-Jan Megens
Published in: PLOS Genetics, Issue 14/9, 2018, Page(s) e1007661, ISSN 1553-7404
Publisher: University of Bern
DOI: 10.1371/journal.pgen.1007661

The type of bottleneck matters: Insights into the deleterious variation landscape of small managed populations

Author(s): Chiara Bortoluzzi, Mirte Bosse, Martijn F. L. Derks, Richard P. M. A. Crooijmans, Martien A. M. Groenen, Hendrik‐Jan Megens
Published in: Evolutionary Applications, Issue 13/2, 2019, Page(s) 330-341, ISSN 1752-4571
Publisher: John Wiley & Sons Ltd
DOI: 10.1111/eva.12872

Improvement of the application of gonadal tissue allotransplantation in the in vitro conservation of chicken genetic lines

Author(s): Krisztina Liptoi, Kitti Buda, Emese Rohn, Arpad Drobnyak, Erika Edvine Meleg, Nora Palinkas-Bodzsar, Barbara Vegi, Judit Barna
Published in: Animal Reproduction Science, Issue 213, 2020, Page(s) 106280, ISSN 0378-4320
Publisher: Elsevier BV
DOI: 10.1016/j.anireprosci.2020.106280

Influence of sperm filtration and the addition of glycerol to UHT skimmed milk- and TEST-based extenders on the quality and fertilizing capacity of chilled ram sperm

Author(s): D.A. Galarza, M. Ladrón de Guevara, P. Beltrán-Breña, M.J. Sánchez-Calabuig, D. Rizos, A. López-Sebastián, J. Santiago-Moreno
Published in: Theriogenology, Issue 133, 2019, Page(s) 29-37, ISSN 0093-691X
Publisher: Elsevier BV
DOI: 10.1016/j.theriogenology.2019.04.027

Supplementing a skimmed milk–egg yolk‐based extender with L‐carnitine helps maintain the motility, membrane integrity and fertilizing capacity of chilled ram sperm

Author(s): Diego A. Galarza, Antonio López‐Sebastián, Julián Santiago‐Moreno
Published in: Reproduction in Domestic Animals, 2020, ISSN 0936-6768
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/rda.13687

Investigation of the Guinea fowl and domestic fowl hybrids as potential surrogate hosts for avian cryopreservation programmes

Author(s): Mariann Molnár, Bence Lázár, Nikoletta Sztán, Barbara Végi, Árpád Drobnyák, Roland Tóth, Krisztina Liptói, Miklós Marosán, Elen Gócza, Sunil Nandi, Michael J. McGrew, Eszter Patakiné Várkonyi
Published in: Scientific Reports, Issue 9/1, 2019, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-019-50763-3

Technical difficulties in gonadal tissue removal of newly hatched chicken in gene preservation practice / A naposkori ivarszervek génmegőrzési célból történő műtéti eltávolításának technikai nehézségei házityúkban

Author(s): Buda, Kitti; Emese Rohn, Judit Barna, Krisztina Liptói
Published in: HUNGARIAN VETERINARY JOURNAL / MAGYAR ÁLLATORVOSOK LAPJA, Issue 141, 2019, Page(s) 355-362, ISSN 0025-004X
Publisher: Magyar Mezogazdasag Ltd.

Indigenous Hungarian chicken breeds as universal recipients for primordial germ cell-based gene conservation / Őshonos magyar tyúkfajták, mint lehetséges univerzális recipiensek az ősivarsejt alapú génmegőrzésben.

Author(s): Tóth Roland, Lázár Bence, Tokodyné Szabadi Nikolett, Patakiné Várkonyi Eszter, Gócza Elen
Published in: HUNGARIAN VETERINARY JOURNAL / MAGYAR ÁLLATORVOSOK LAPJA, Issue 141, 2019, Page(s) 439-447, ISSN 0025-004X
Publisher: Magyar Mezogazdasag Ltd.

Sampling strategy optimization to increase statistical power in landscape genomics: A simulation‐based approach

Author(s): Oliver Selmoni, Elia Vajana, Annie Guillaume, Estelle Rochat, Stéphane Joost
Published in: Molecular Ecology Resources, Issue 20/1, 2019, Page(s) 154-169, ISSN 1755-098X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/1755-0998.13095

Quality Management Practices of Gene Banks for Livestock: A Global Review

Author(s): Flin Zomerdijk, Sipke-Joost Hiemstra, Maëlle d'Arbaumont, Michèle Tixier-Boichard, Paul Boettcher
Published in: Biopreservation and Biobanking, 2020, ISSN 1947-5535
Publisher: Mary Ann Liebert Inc.
DOI: 10.1089/bio.2019.0128

Epigenetic analysis of high and low motile sperm populations reveals methylation variation in satellite regions within the pericentromeric position and in genes functionally related to sperm DNA organization and maintenance in Bos taurus

Author(s): Emanuele Capra, Barbara Lazzari, Federica Turri, Paola Cremonesi, Antônia Moemia Rodrigues Portela, Paolo Ajmone-Marsan, Alessandra Stella, Flavia Pizzi
Published in: BMC Genomics, Issue 20/1, 2019, ISSN 1471-2164
Publisher: BioMed Central
DOI: 10.1186/s12864-019-6317-6

Inbreeding depression due to recent and ancient inbreeding in Dutch Holstein–Friesian dairy cattle

Author(s): Harmen P. Doekes, Roel F. Veerkamp, Piter Bijma, Gerben de Jong, Sipke J. Hiemstra, Jack J. Windig
Published in: Genetics Selection Evolution, Issue 51/1, 2019, ISSN 1297-9686
Publisher: Springer Nature
DOI: 10.1186/s12711-019-0497-z

Inference of Selection from Genetic Time Series Using Various Parametric Approximations to the Wright-Fisher Model

Author(s): Cyriel Paris, Bertrand Servin, Simon Boitard
Published in: "G3&#58; Genes|Genomes|Genetics", Issue 9/12, 2019, Page(s) 4073-4086, ISSN 2160-1836
Publisher: Genetics Society of America
DOI: 10.1534/g3.119.400778

Genome-wide SNP data unveils the globalization of domesticated pigs

Author(s): Bin Yang, Leilei Cui, Miguel Perez-Enciso, Aleksei Traspov, Richard P. M. A. Crooijmans, Natalia Zinovieva, Lawrence B. Schook, Alan Archibald, Kesinee Gatphayak, Christophe Knorr, Alex Triantafyllidis, Panoraia Alexandri, Gono Semiadi, Olivier Hanotte, Deodália Dias, Peter Dovč, Pekka Uimari, Laura Iacolina, Massimo Scandura, Martien A. M. Groenen, Lusheng Huang, Hendrik-Jan Megens
Published in: Genetics Selection Evolution, Issue 49/1, 2017, ISSN 1297-9686
Publisher: BioMed Central
DOI: 10.1186/s12711-017-0345-y

Effect of supplementation of valine to chicken extender on sperm cryoresistance and post-thaw fertilization capacity

Author(s): B. Bernal, N. Iglesias-Cabeza, U. Sánchez-Rivera, A. Toledano-Díaz, C. Castaño, S. Pérez-Cerezales, A. Gutiérrez-Adán, A. López-Sebastián, P. García-Casado, M.G. Gil, H. Woelders, E. Blesbois, J. Santiago-Moreno
Published in: Poultry Science, Issue 99/12, 2020, Page(s) 7133-7141, ISSN 0032-5791
Publisher: Poultry Science Association Inc.
DOI: 10.1016/j.psj.2020.09.060

Protein expression reveals a molecular sexual identity of avian primordial germ cells at pre-gonadal stages.

Author(s): Laura Soler; Laura Soler; Sabine Alves; Aurélien Brionne; Aurore Jacques; Vanessa Guérin; Maeva Cherif-Feildel; Lucie Combes-Soia; Sophie Fouchécourt; Aurore Thélie; Elisabeth Blesbois; Michael J. McGrew; Valérie Labas; Marina Govoroun
Published in: Scientific Reports, Issue vol. 11 , no. 1 , 19236, 2021, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-021-98454-2

The European Nucleotide Archive in 2020

Author(s): Peter W Harrison, Alisha Ahamed, Raheela Aslam, Blaise T F Alako, Josephine Burgin, Nicola Buso, Mélanie Courtot, Jun Fan, Dipayan Gupta, Muhammad Haseeb, Sam Holt, Talal Ibrahim, Eugene Ivanov, Suran Jayathilaka, Vishnukumar Balavenkataraman Kadhirvelu, Manish Kumar, Rodrigo Lopez, Simon Kay, Rasko Leinonen, Xin Liu, Colman O’Cathail, Amir Pakseresht, Youngmi Park, Stephane Pesant, Nadim Rahm
Published in: Nucleic Acids Research, Issue 49/D1, 2020, Page(s) D82-D85, ISSN 0305-1048
Publisher: Oxford University Press
DOI: 10.1093/nar/gkaa1028

Genes Encoding Mammalian Oviductal Proteins Involved in Fertilization are Subjected to Gene Death and Positive Selection

Author(s): Carla Moros-Nicolás, Sophie Fouchécourt, Ghylène Goudet, Philippe Monget
Published in: Journal of Molecular Evolution, Issue 86/9, 2018, Page(s) 655-667, ISSN 0022-2844
Publisher: Springer Verlag
DOI: 10.1007/s00239-018-9878-0

Revised Calculation of Kalinowski’s Ancestral and New Inbreeding Coefficients

Author(s): Harmen P. Doekes, Ino Curik, István Nagy, János Farkas, György Kövér, Jack J. Windig
Published in: Diversity, Issue 12/4, 2020, Page(s) 155, ISSN 1424-2818
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/d12040155

Inbreeding depression across the genome of Dutch Holstein Friesian dairy cattle

Author(s): Harmen P. Doekes, Piter Bijma, Roel F. Veerkamp, Gerben de Jong, Yvonne C. J. Wientjes, Jack J. Windig
Published in: Genetics Selection Evolution, Issue 52/1, 2020, ISSN 1297-9686
Publisher: BMC
DOI: 10.1186/s12711-020-00583-1

Prioritizing sequence variants in conserved non-coding elements in the chicken genome using chCADD

Author(s): Christian Groß, Chiara Bortoluzzi, Dick de Ridder, Hendrik-Jan Megens, Martien A. M. Groenen, Marcel Reinders, Mirte Bosse
Published in: PLOS Genetics, Issue 16/9, 2020, Page(s) e1009027, ISSN 1553-7404
Publisher: PLOS
DOI: 10.1371/journal.pgen.1009027

Gene Banks as Reservoirs to Detect Recent Selection: The Example of the Asturiana de los Valles Bovine Breed

Author(s): Simon Boitard, Cyriel Paris, Natalia Sevane, Bertrand Servin, Kenza Bazi-Kabbaj, Susana Dunner
Published in: Frontiers in Genetics, 2021, ISSN 1664-8021
Publisher: Frontiers Media
DOI: 10.3389/fgene.2021.575405

Heterogeneity of a dwarf phenotype in Dutch traditional chicken breeds revealed by genomic analyses

Author(s): Zhou Wu, Chiara Bortoluzzi, Martijn F. L. Derks, Langqing Liu, Mirte Bosse, Sipke Joost Hiemstra, Martien A. M. Groenen, Richard P. M. A. Crooijmans
Published in: Evolutionary Applications, Issue 14/4, 2021, Page(s) 1095-1108, ISSN 1752-4571
Publisher: John Wiley & Sons Ltd
DOI: 10.1111/eva.13183

A Comparative Analysis of Oocyte Development in Mammals

Author(s): Rozenn Dalbies-Tran, Véronique Cadoret, Alice Desmarchais, Sébastien Elis, Virginie Maillard, Philippe Monget, Danielle Monniaux, Karine Reynaud, Marie Saint-Dizier, Svetlana Uzbekova
Published in: Cells, Issue 9/4, 2020, Page(s) 1002, ISSN 2073-4409
Publisher: MDPI
DOI: 10.3390/cells9041002

Genomic characterization and conservation of genetic diversity in cattle

Author(s): Harmen P. Doekes
Published in: 2020, ISBN 9789463954235
Publisher: Wageningen University
DOI: 10.18174/523321

Using whole-genome sequencing data for demographic and functional evaluations of small managed populations

Author(s): Chiara Bortoluzzi
Published in: 2020, ISBN 978-94-6395-482-2
Publisher: Wageningen University
DOI: 10.18174/528193

The use of infertile interspecific hybrids for a novel model of PGC reintroduction applicable in gene preservation for poultry

Author(s): Mariann Molnár
Published in: Issue 22 November 2017, 2017, Page(s) 1-42
Publisher: Szent István University

Retrieving patterns of genetic diversity in a global set of chicken breeds

Author(s): Malomane DK
Published in: 2019
Publisher: University of Goettingen

Methods and software to enhance statistical analysis in large scale problems in breeding and quantitative genetics

Author(s): Pook T
Published in: 2019
Publisher: University of Goettingen

Développement et évaluation de méthodes statistiques d'inférence de l sélection à partir de données génomiques temporelles

Author(s): C. Paris
Published in: 2020
Publisher: INP Toulouse

Optimización de la criopreservación (refrigeración y congelación) de espermatozoides de morueco para su aplicación en inseminación artificial a tiempo fijo transcervical [Optimization of ram semen cryopreservation (chilling and freezing) for use in transcervical artificial insemination

Author(s): Galarza D.A.
Published in: 2019
Publisher: UCM

A survey of stakeholder attitudes towards bio bank management in Europe

Author(s): Klaffenböck, Michael; Mészáros, Gábor; Berger, Beate; Wainwright, Warwick; Doré, Antoine; Sölkner, Johann; Wurzinger, Maria
Published in: 11. World Congress on Genetics Applied to Livestock, ICAR and Interbull, Auckland , NZL, 2018-02-11-2018-02-16, Issue 1, 2018
Publisher: University of Auckland

Primordial germ cell-based biobanking of Hungarian indigenous chicken breeds

Author(s): Bence Lazar, Roland Tóth, Alexandra Nagy, Mahek Anand, Krisztina Liptói, Eszter Patakiné Várkonyi, Elen Gócza
Published in: Poultry Science, Issue 17-20 July 2017, 2017, Page(s) 62
Publisher: Poultry Science Association

Germline chimera production from cryopreserved primordial germ cells of a Hungarian indigenous chicken breed

Author(s): Bence Lazar, Roland Tóth, Mahek Anand, Mariann Molnár, Krisztina Liptói, Eszter Patakiné Várkonyi, Elen Gócza
Published in: World’s Poultry Science Journal: The XV. European Poultry Conference, Conference Information and Proceedings, Issue 17-21 September 2018, 2018, Page(s) 453
Publisher: World's Poultry Science Association

Successful biobanking of an indigenous chicken breed with cryopreserved primordial germ cell lines

Author(s): Bence Lazar, Roland Toth, Mahek Anand, Nikoletta Sztan, Mariann Molnar, Barbara Vegi, Arpad Drobnyak, Eszter Patakine Varkonyi, Elen Gocza
Published in: Poultry Science 97(E-Supplement 2), Issue 6-8 November 2018, 2018, Page(s) 16
Publisher: Poultry Science Association

The use of infertile interspecific hybrids for a novel model of pgc reintroduction applicable in gene preservation for poultry

Author(s): Mariann Molnár, Bence Lázár, Nikoletta Sztán, Árpád Drobnyák, Barbara Végi, Krisztina Liptói, Judit Barna, Eszter Patakiné Várkonyi
Published in: World’s Poultry Science Journal: The XV. European Poultry Conference, Conference Information and Proceedings, Issue 17-21 September 2018, 2018, Page(s) 462
Publisher: World's Poultry Science Association

New possibilities in the gene conservation of Hungarian indigenous chicken breeds

Author(s): Liptói K, Buda K, Végi B, Váradi E, Rohn E, Drobnyák Á, Lehoczky I, Gál J, Barna J
Published in: The XVth European Poultry Conference, Issue 14-21 September 2018, 2018, Page(s) 458, ISBN 978-90-829157-0-9
Publisher: roatian Branch of the World’s Poultry Science Association under the hospice of the World’s Poultry Science Journal

A simulation approach to optimize breeding programs with application to the introgression of the blue eggcolor into a high performing layer line

Author(s): Ngoc-Thuy Ha, Torsten Pook, Claudia Dierks, Steffen Weigend, Rudolf Preisinger, Henner Simianer
Published in: Proceedings Of the Xth European Symposiumon Poultry Genetics, Issue June 2017, 2017, Page(s) 107
Publisher: WPSA France

From Genebank into Breeding Line –An animal model for introgression of blue egg shell color into a White Leghorn line

Author(s): Claudia Dierks, Ngoc-Thuy Ha, Henner Simianer, Rudolf Preisinger,Steffen Weigend
Published in: Proceedings Of the Xth European Symposiumon Poultry Genetics, Issue 26 –28, June 2017, 2017, Page(s) 105
Publisher: WPSA France

In ovo genotyping of chicken using DNA isolated from allantoic fluid

Author(s): C. Dierks, A. Weigend, S. Klein, N. Ha, H. Simianer, R. Preisinger, S. Weigend
Published in: Conference Information and Proceedings of the XVth European Poultry Conference, Issue 17-21, September 2018, 2018
Publisher: WPSA Croatian Branch

Development of cryopreservation protocols of Copper Turkey' semen

Author(s): B.Vegi ; Á., Drobnyák ; Zs., Szabó ; J., Barna
Published in: The XVth European Poultry Conference, Issue 17-21 September 2018, 2018, Page(s) 497, ISBN 978-90-829157-0-9
Publisher: Croatian Branch of the World’s Poultry Science Association under the hospice of the World’s Poultry Science Journal

Mapping the diversity and characteristics of European farm animal genetic collections: banks or museums?

Author(s): A.S. Passemard, S.J. Hiemstra, M. Tixier-Boichard, & C. Danchin-Burge
Published in: Proceedings of the World Congress on Genetics Applied to Livestock Production (WCGALP), Issue February 2018, 2018, Page(s) Volume Electronic Poster Session - Challenges - Species Conservation, 651
Publisher: University of New Zealand

Sperm selection by density-gradients centrifugation of cold-stored Merino ram semen up to 48 h improves viability and membrane integrity.

Author(s): Galarza DA, Ladrón de Guevara M, Beltrán-Breña P, Rizos D, López-Sebastián A, Santiago-Moreno J
Published in: 34th Annual Scientific Meeting AETE, Issue 7-8 September 2018, 2018, Page(s) 40-41
Publisher: AETE

Leche desnatada UHT como una alternativa exitosa a diluyentes sintéticos en semen de morueco filtrado con Sephadex G-15 y almacenado en refrigeración

Author(s): Galarza DA, López-Sebastián A, Santiago-Moreno J
Published in: IV Vet in Doc. Jornadas de Investigación en Doctorado, Issue 27 June 2018, 2018, Page(s) 12
Publisher: Facultad de Veterinaria, Universidad Complutense de Madrid

Assessment of fertilizing ability of Merino ram semen cold-stored up to 48h by heterologous in vitro fertilization of bovine oocytes

Author(s): Galarza DA, Ladrón de Guevara M, Beltrán-Breña P, Sánchez-Calabuig MJ, López-Sebastián A, Santiago-Moreno J, Rizos D
Published in: 45 Annual Conference IETS, Issue 20-23 January 2019, 2019, Page(s) 30-38
Publisher: IETS

Sperm cryopreservation in Birchen Leonesa and Blue Leonesa roosters in their original area of Curueño Valley

Author(s): Bernal B, Castaño C, Esteso MC, Toledano-Díaz A, Domínguez González MA, Gil MG, Dávila S, Campo JL, Santiago-Moreno J
Published in: Symposium Científico de Avicultura, Issue 3-4 October 2018, 2018, Page(s) secc. 154
Publisher: Spanish Association of Poultry Science

The influence of demography and recombination rate on the homozygosity landscape in the poultry genome

Author(s): Chiara Bortoluzzi, Mirte Bosse, Martien AM Groenen, Hendrik-Jan Megens
Published in: BioSB 2018, 4th Dutch Bioinformatics & Systems Biology Conference, Issue 15-16 May 2018, 2018, Page(s) 88-89
Publisher: BioSB

Detection and charaterization of deleterious variants in traditional chicken breeds

Author(s): Chiara Bortoluzzi, Martijn Derks, Steffen Weigend, Martien AM Groenen, Hendrik-Jan Megens
Published in: SMBE 2018, Issue 8-12 July 2018, Poster session, Group B, 2018, Page(s) POB-368
Publisher: SMBE, member of Scientific Society Publisher Alliance

Genome-wide characterization of runs of homozygosity and estimation of genomic inbreeding in Ugandan goat breeds

Author(s): Robert Boyle Onzima, Harmen. P Doekes, Luiz Fernando Brito, Maulik. R Upadhyay, Egbert Kanis, Martien. AM Groenen, Richard PMA Crooijmans
Published in: Proceedings of the 11th World Congress on Genetics Applied to Livestock Production (WCGALP), Issue Volume Species - Caprine, 166, 2018
Publisher: World Congress on Genetics Applied to Livestock Production Digital Archive

MoBPS – Modular Breeding Program Simulator

Author(s): Pook T, Ganesan A, Ha T, Schlather M, Simianer H
Published in: 2019
Publisher: XXIVth EUCARPIA Maize and Sorghum Conference

From wild populations to global diversity – Insight into the Synbreed Chicken Diversity Panel

Author(s): Malomane DK, Weigend S, Schmitt AO, Weigend A , Reimer C, Simianer H
Published in: 2019
Publisher: Proceedings of the XIth European symposium on Poultry Genetics

Wie Imputing SNP Ascertainment Bias reduzieren kann und wann es ihn verschärft

Author(s): Johannes Geibel, Torsten Pook, Steffen Weigend, Annett Weigend, Henner Simianer
Published in: 2019
Publisher: Tagungsband der Vortragstagung der Deutschen Gesellschaft für Züchtungskunde und der Gesellschaft für Tierzuchtwissenschaften

IMAGE: Innovative Management of Animal Genetic Resources

Author(s): O. Cortes, L. T. Gama, S. Dunner, IMAGE Consortium, M. Tixier-Boichard
Published in: 2019
Publisher: International Society of Animal Genetic Resources

Annotation of selection signatures in the bovine breed Asturiana de Valles

Author(s): C. Paris, S. Boitard, B. Servin, N. Sevane, S. Dunner
Published in: 2019
Publisher: International Society of Animal Genetic Resources

Stakeholder involvement and ethics in conservation of animal genetic resources in gene Banks

Author(s): Kugler, W., Charvolin, E., Khayatzadeh, N. Mészáros, G., Berger, B., Martyniuk, E., Sölkner, J., Wurzinger, M., Dore, A.
Published in: 2019
Publisher: Wageningen Academic Publishers

Population structure and genetic diversity analysis in five rare endangered goat breeds in Austria

Author(s): Khayatzadeh, N., Klaffenböck, M., Mészáros, G., Wurzinger, M., Berger, B., Sölkner, J
Published in: 2019
Publisher: Wageningen Academic Publishers

Breeding programs in the South American Creole cattle

Author(s): G. Mészáros, R. Martínez, C. Lucero, W.O. Burgoz Paz, M. Naves , H. Doekes, J. Windig, T. Pook, H. Simianer
Published in: 2020
Publisher: Wageningen Academic Publishers

Dutch gene bank for farm animals: beyond conserving genetic material

Author(s): Anouk Schurink, Ina Hulsegge, Jack Windig, Rita Hoving, Sipke Joost Hiemstra
Published in: 2019
Publisher: Wageningen Academic Publishers

New opportunities of animal reproductive and cryopreservation technologies for breeding and conservation

Author(s): H. Woelders, A. van Soom, T. Stout, B. Roelen en S.J. Hiemstra
Published in: 2019
Publisher: New opportunities of animal reproductive and cryopreservation technologies for breeding and conservation

Novel gene banking approaches in poultry and pigs; PGCs, gonads, embryos, semen

Author(s): Henri Woelders
Published in: 2019
Publisher: Repro and Cryo Technologies in Animal Breeding and Conservation

Freezing poultry semen; effects of cpa concentration x cooling rate, and other factors

Author(s): Henri Woelders, Agnes A.C. de Wit, Sipke Joost Hiemstra, Isabelle Grasseau, Elisabeth Blesbois, Berenice Bernal, Julián Santiago-Moreno
Published in: 2019
Publisher: Wageningen Academic Publishers

Value of gene bank material for the commercial breeding population of Dutch Holstein Friesian cattle

Author(s): J.J. Windig, H.P. Doekes, R.F. Veerkamp, P. Bijma and S.J. Hiemstra
Published in: 2019
Publisher: Wageningen Academic Publishers

Rationalization and further development of gene bank collections

Author(s): S.J. Hiemstra, C. Danchin, P. Boettcher, D. Moran
Published in: Book of abstracts of the 70th annual meeting of the European federation of animal science, 2019
Publisher: Wageningen Academic Publishers

Enhancing the functioning of farm animal gene banks in Europe: results of the IMAGE project

Author(s): Sipke Joost Hiemstra*, Paul Boettcher, Richard Crooijmans, Coralie Danchin-Burge, Gregoire Leroy, Dominic Moran, Waltraud Kugler, Henri Woelder, Michele Tixier-Boichard
Published in: Proceedings of 11th EPSG conference, 2019
Publisher: WPSA

Marker-assisted introgression of blue eggshell color into a white egg layer line

Author(s): C. Dierks, N.T. Ha, D. Cavero, H. Simianer, R. Preisinger, S. Weigend
Published in: 2019
Publisher: Proceedings of the 37th International Conference on Animal Genetics

Introgression of blue eggshell colour from a gene bank collection into a White Leghorn breeding line

Author(s): C. Dierks, N.T. Ha, H. Simianer, D. Cavero, R. Preisinger, S. Weigend
Published in: Book of abstracts of the 70th annual meeting of the European federation of animal science, 2019
Publisher: Wageningen Academic Publisher

Effect of population bottlenecks on patterns of deleterious variation in small captive populations

Author(s): C. Bortoluzzi, M. Bosse, M.F.L. Derks, R.P.M.A. Crooijmans, M. Groenen, H.J.W.C. Megens
Published in: Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science, 2019, Page(s) 108
Publisher: Wageningen Academic Publishers

Marker-assisted Introgression of Blue Eggshell Color into a White Egg Layer Line

Author(s): C. Dierks, N.T. Ha, H. Simianer, B. Andersson, D. Cavero, R. Preisinger, S. Weigend
Published in: Proceedings of the 11th European symposium on Poultry Genetics, 2019
Publisher: WPSA

Gonadal Tissue Transplantation of day-old Chicken for Gene Conservation Purpose

Author(s): Buda Kitti Anikó
Published in: National Conference of Student Scientific Association, Agricultural Sciences Section,, Issue 5-7 April,2017,, 2017, Page(s) english abstract only
Publisher: Szechenyi University

Influence of breed and seminal plasma on cryopreservation of rooster (Gallus gallus domesticus) sperm

Author(s): C. Castaño, S. Romo, A. Toledano-Diaz, M.C. Esteso, A. López.-Sebastián, J. Santiago-Moreno
Published in: XVII Jornadas sobre Producción Animal, 2017, Page(s) 411-413, ISBN 978-84-697-3065-2
Publisher: Asociación Profesional para el Desarrollo Agrario

ABS Case studies – “Utilization” in the Animal Breeding Sector

Author(s): SIPKE JOOST HIEMSTRA, MARTIN BRINK, BERT VISSER
Published in: EAAP Conference 2016 - Challenge session, 2016
Publisher: EAAP

Innovative Management of Animal Genetic Resources (IMAGE) un puente hacia el 2020

Author(s): Cortés O., Gama L., Cañón J., Dunner S
Published in: X CONGRESSO IBÉRICO PROGRAMA RECURSOS GENÉTICOS ANIMAIS, 2016
Publisher: SPREGA - Sociedade Portuguesa de Recursos Genéticos Animais

Population structure analysis of the New World Creole cattle

Author(s): G. Mészáros, M. Naves, R. Martínez, C. Lucero and J. Sölkner
Published in: EAAP – 68th Annual Meeting, 2017, Page(s) 105
Publisher: EAAP

Diversiteit en krielonderzoek bij de traditionele Nederlandse hoenderrassen

Author(s): Chiara Bortoluzzi, Hendrik-Jan Megens, Richard Crooijmans, Henk de Boer, Ad Taks, Piet Kroon, Rita Hoving
Published in: Zeldzaam Huisdier, Issue Augustus 2018, 43 (2018)3, 2018, Page(s) 20-21, ISSN 0929-905X
Publisher: Zeldzaam huisdier

Burning issues for animal gene banks: news from IMAGE H2020 project

Author(s): Tixier-Boichard M.,
Published in: "ScitechEuropa quaterly issue #31", 2019
Publisher: SciTechEuropa

A universal tool to share knowledge about animal gene banks

Author(s): Tixier-Boichard M., Crooijmans R.
Published in: SciTechEuropa Special Report, 2019
Publisher: SciTechEuropa

IMAGE: providing access to data from Europe's animal gene banks

Author(s): Tixier-Boichard M., Stella A.,
Published in: The Innovation Platform, Issue issue 2, 2020, Page(s) 256-257
Publisher: Innovationnewsnetwork

Livestock diversity

Author(s): SIPKE JOOST HIEMSTRA & DANIJELA BOJKOVSKI
Published in: Pan European Networks: Science & Technology 22, Issue 22, 2017, Page(s) 194-196, ISSN 2049-2405
Publisher: Pan European Network

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