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Tools for Assessment and Planning of Aquaculture Sustainability

Deliverables

Publications

Shellfish Aquaculture from Space: Potential of Sentinel2 to Monitor Tide-Driven Changes in Turbidity, Chlorophyll Concentration and Oyster Physiological Response at the Scale of an Oyster Farm

Author(s): Pierre Gernez, David Doxaran, Laurent Barillé
Published in: Frontiers in Marine Science, 4, 2017, ISSN 2296-7745
Publisher: Frontiers
DOI: 10.3389/fmars.2017.00137

Assimilation of Ocean-Color Plankton Functional Types to Improve Marine Ecosystem Simulations

Author(s): S. Ciavatta, R. J. W. Brewin, J. Skákala, L. Polimene, L. de Mora, Y. Artioli, J. I. Allen
Published in: Journal of Geophysical Research: Oceans, 123/2, 2018, Page(s) 834-854, ISSN 2169-9275
Publisher: Wiley
DOI: 10.1002/2017JC013490

Sensitivity of the simulated Oxygen Minimum Zone to biogeochemical processes at an oligotrophic site in the Arabian Sea

Author(s): S. Sankar, L. Polimene, L. Marin, N.N. Menon, A. Samuelsen, R. Pastres, S. Ciavatta
Published in: Ecological Modelling, 372, 2018, Page(s) 12-23, ISSN 0304-3800
Publisher: Elsevier BV
DOI: 10.1016/j.ecolmodel.2018.01.016

Shellfish Aquaculture from Space: Potential of Sentinel2 to Monitor Tide-Driven Changes in Turbidity, Chlorophyll Concentration and Oyster Physiological Response at the Scale of an Oyster Farm

Author(s): Gernez, Pierre; Doxaran, David; Barillé, Laurent
Published in: Frontiers, 4, 2017, ISSN 2296-7745
Publisher: Frontiers
DOI: 10.3389/fmars.2017.00137/full

Optimising microalgae diets in sea urchin Paracentrotus lividus larviculture to promote aquaculture diversification

Author(s): Marta Castilla-Gavilán, Florence Buzin, Bruno Cognie, Justine Dumay, Vincent Turpin, Priscilla Decottignies
Published in: Aquaculture, 490, 2018, Page(s) 251-259, ISSN 0044-8486
Publisher: Elsevier BV
DOI: 10.1016/j.aquaculture.2018.02.003

Optimizing metamorphosis in Paracentrotus lividus aquaculture using alternative macroalgae species to Corallina sp.

Author(s): Marta Castilla-Gavilán, Vincent Turpin, Florence Buzin, Bruno Cognie, Priscilla Decottignies
Published in: Aquaculture International, 26/6, 2018, Page(s) 1511-1518, ISSN 0967-6120
Publisher: Kluwer Academic Publishers
DOI: 10.1007/s10499-018-0305-8

Variability of adjacency effects in sky reflectance measurements

Author(s): Philipp M. M. Groetsch, Peter Gege, Stefan G. H. Simis, Marieke A. Eleveld, Steef W. M. Peters
Published in: Optics Letters, 42/17, 2017, Page(s) 3359, ISSN 0146-9592
Publisher: Optical Society of America
DOI: 10.1364/OL.42.003359

Repeatability, Reproducibility, Separative Power and Subjectivity of Different Fish Morphometric Analysis Methods

Author(s): Péter Takács, Zoltán Vitál, Árpád Ferincz, Ádám Staszny
Published in: PLOS ONE, 11/6, 2016, Page(s) e0157890, ISSN 1932-6203
Publisher: Public Library of Science
DOI: 10.1371/journal.pone.0157890

What does ‘beyond compliance’ look like for the Scottish salmon aquaculture industry?

Author(s): Clara McGhee, Lynne Falconer, Trevor Telfer
Published in: Marine Policy, 109, 2019, Page(s) 103668, ISSN 0308-597X
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.marpol.2019.103668

Use of geographic information systems for aquaculture and recommendations for development of spatial tools

Author(s): Lynne Falconer, Anne Lise Middelboe, Hanne Kaas, Lindsay G. Ross, Trevor C. Telfer
Published in: Reviews in Aquaculture, 2019, ISSN 1753-5123
Publisher: Blackwell Pub. Asia
DOI: 10.1111/raq.12345

Use of models for the environmental risk assessment of veterinary medicines in European aquaculture: current situation and future perspectives

Author(s): Andreu Rico, Marco Vighi, Paul J. Van den Brink, Mechteld Horst, Ailbhe Macken, Adam Lillicrap, Lynne Falconer, Trevor C. Telfer
Published in: Reviews in Aquaculture, 11/4, 2018, Page(s) 969-988, ISSN 1753-5123
Publisher: Blackwell Pub. Asia
DOI: 10.1111/raq.12274

Evaluation of dried macrophytes as an alternative diet for the rearing of the sea urchin Paracentrotus lividus (Lamarck, 1816)

Author(s): Marta Castilla‐Gavilán, Bruno Cognie, Emilie Ragueneau, Vincent Turpin, Priscilla Decottignies
Published in: Aquaculture Research, 50/7, 2019, Page(s) 1762-1769, ISSN 1355-557X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/are.14045

Ecoregions in the Mediterranean Sea Through the Reanalysis of Phytoplankton Functional Types and Carbon Fluxes

Author(s): S. Ciavatta, S. Kay, R. J. W. Brewin, R. Cox, A. Di Cicco, F. Nencioli, L. Polimene, M. Sammartino, R. Santoleri, J. Skákala, M. Tsapakis
Published in: Journal of Geophysical Research: Oceans, 2019, ISSN 2169-9275
Publisher: American Geophysical Union (AGU) / Wiley
DOI: 10.1029/2019jc015128

Remote Sensing-Driven Pacific Oyster (Crassostrea gigas) Growth Modeling to Inform Offshore Aquaculture Site Selection

Author(s): Stephanie C. J. Palmer, Pierre M. Gernez, Yoann Thomas, Stefan Simis, Peter I. Miller, Philippe Glize, Laurent Barillé
Published in: Frontiers in Marine Science, 6, 2020, Page(s) 1-19, ISSN 2296-7745
Publisher: frontiers
DOI: 10.3389/fmars.2019.00802

Biological, socio-economic, and administrative opportunities and challenges to moving aquaculture offshore for small French oyster-farming companies

Author(s): Laurent Barillé, Anthony Le Bris, Philippe Goulletquer, Yoann Thomas, Philippe Glize, Frank Kane, Lynne Falconer, Patrice Guillotreau, Brice Trouillet, Stéphanie Palmer, Pierre Gernez
Published in: Aquaculture, 521, 2020, Page(s) 735045, ISSN 0044-8486
Publisher: Elsevier BV
DOI: 10.1016/j.aquaculture.2020.735045

Sea urchin recruitment: Effect of diatom based biofilms on Paracentrotus lividus competent larvae

Author(s): Marta Castilla-Gavilán, Meshi Reznicov, Vincent Turpin, Priscilla Decottignies, Bruno Cognie
Published in: Aquaculture, 515, 2020, Page(s) 734559, ISSN 0044-8486
Publisher: Elsevier BV
DOI: 10.1016/j.aquaculture.2019.734559

Metabolomics and traditional indicators unveil stress of a seagrass (Cymodocea nodosa) meadow at intermediate distance from a fish farm

Author(s): Willemien de Kock, Harald Hasler-Sheetal, Marianne Holmer, Manolis Tsapakis, Eugenia T. Apostolaki
Published in: Ecological Indicators, 109, 2020, Page(s) 105765, ISSN 1470-160X
Publisher: Elsevier BV
DOI: 10.1016/j.ecolind.2019.105765

Assessment of atmospheric correction algorithms for the Sentinel-2A MultiSpectral Imager over coastal and inland waters

Author(s): M.A. Warren, S.G.H. Simis, V. Martinez-Vicente, K. Poser, M. Bresciani, K. Alikas, E. Spyrakos, C. Giardino, A. Ansper
Published in: Remote Sensing of Environment, 225, 2019, Page(s) 267-289, ISSN 0034-4257
Publisher: Elsevier BV
DOI: 10.1016/j.rse.2019.03.018

Validation of a spectral correction procedure for sun and sky reflections in above-water reflectance measurements

Author(s): Philipp M. M. Groetsch, Peter Gege, Stefan G. H. Simis, Marieke A. Eleveld, Steef W. M. Peters
Published in: Optics Express, 25/16, 2017, Page(s) A742, ISSN 1094-4087
Publisher: Optical Society of America
DOI: 10.1364/OE.25.00A742

Designing a small-sized autonomous underwater vehicle architecture for regular periodic fish-cage net inspection

Author(s): Vaggelis Chalkiadakis, Nikos Papandroulakis, George Livanos, Konstantia Moirogiorgou, George Giakos, Michalis Zervakis
Published in: 2017 IEEE International Conference on Imaging Systems and Techniques (IST), 2017, Page(s) 1-6, ISBN 978-1-5386-1620-8
Publisher: IEEE
DOI: 10.1109/IST.2017.8261525

WISPstation: A new autonomous above water radiometer system

Author(s): Peters, Steef; Laanen, Marnix; Groetsch, Philipp; Ghezehegn, Semhar; Poser, Kathrin; Hommersom, Annelies; DeReus, Esther; Spaias, Lazaros
Published in: An extended abstract for a poster presented at the Ocean Optics conference in Dubrovnik 2018, 3, 2018
Publisher: Ocean Optics
DOI: 10.5281/zenodo.2533079

TAPAS - Tools for Assessment and Planning of Aquaculture Sustainability - Horizon2020

Author(s): Trevor Telfer, Lynne Falconer, Hanne Kaas, David Jackson
Published in: Impact, 2018/8, 2018, Page(s) 9-11, ISSN 2398-7073
Publisher: Science Impact Ltd
DOI: 10.21820/23987073.2018.8.9

Software

Cage Aquaculture Particulate Output and Transport (CAPOT)

Author(s): Telfer, Trevor; Falconer, Lynne; Bostock, John; Corner, Richard; Oliver, Robert
DOI: 10.5281/zenodo.6551332; 10.5281/zenodo.6551331; 10.5281/zenodo.6551355
Publisher: Zenodo

Cage Aquaculture Particulate Output and Transport (CAPOT)

Author(s): Telfer, Trevor; Falconer, Lynne; Bostock, John; Corner, Richard; Oliver, Robert
DOI: oai:zenodo.org:6551332; 10.5281/zenodo.6551332
Publisher: Zenodo

Cage Aquaculture Particulate Output and Transport (CAPOT)

Author(s): Telfer, Trevor; Falconer, Lynne; Bostock, John; Corner, Richard; Oliver, Robert
DOI: oai:zenodo.org:6551355; 10.5281/zenodo.6551355
Publisher: Zenodo