Publications Peer reviewed articles (31) Selective Mediator dependence of cell-type-specifying transcription Author(s): Martin G. Jaeger, Björn Schwalb, Sebastian D. Mackowiak, Taras Velychko, Alexander Hanzl, Hana Imrichova, Matthias Brand, Benedikt Agerer, Someth Chorn, Behnam Nabet, Fleur M. Ferguson, André C. Müller, Andreas Bergthaler, Nathanael S. Gray, James E. Bradner, Christoph Bock, Denes Hnisz, Patrick Cramer, Georg E. Winter Published in: Nature Genetics, Issue 52/7, 2020, Page(s) 719-727, ISSN 1061-4036 Publisher: Nature Publishing Group DOI: 10.1038/s41588-020-0635-0 Disturbed mitochondrial dynamics in CD8+ TILs reinforce T cell exhaustion Author(s): Yi-Ru Yu, Hana Imrichova, Haiping Wang, Tung Chao, Zhengtao Xiao, Min Gao, Marcela Rincon-Restrepo, Fabien Franco, Raphael Genolet, Wan-Chen Cheng, Camilla Jandus, George Coukos, Yi-Fan Jiang, Jason W. Locasale, Alfred Zippelius, Pu-Ste Liu, Li Tang, Christoph Bock, Nicola Vannini, Ping-Chih Ho Published in: Nature Immunology, Issue 21/12, 2020, Page(s) 1540-1551, ISSN 1529-2908 Publisher: Nature Publishing Group DOI: 10.1038/s41590-020-0793-3 Single-cell RNA-seq with spike-in cells enables accurate quantification of cell-specific drug effects in pancreatic islets Author(s): Brenda Marquina-Sanchez, Nikolaus Fortelny, Matthias Farlik, Andhira Vieira, Patrick Collombat, Christoph Bock, Stefan Kubicek Published in: Genome Biology, Issue 21/1, 2020, ISSN 1474-760X Publisher: BioMed Central DOI: 10.1186/s13059-020-02006-2 SARS-CoV-2 mutations in MHC-I-restricted epitopes evade CD8 + T cell responses Author(s): Benedikt Agerer, Maximilian Koblischke, Venugopal Gudipati, Luis Fernando Montaño-Gutierrez, Mark Smyth, Alexandra Popa, Jakob-Wendelin Genger, Lukas Endler, David M. Florian, Vanessa Mühlgrabner, Marianne Graninger, Stephan W. Aberle, Anna-Maria Husa, Lisa Ellen Shaw, Alexander Lercher, Pia Gattinger, Ricard Torralba-Gombau, Doris Trapin, Thomas Penz, Daniele Barreca, Ingrid Fae, Sabine Wenda, Published in: Science Immunology, Issue 6/57, 2021, Page(s) eabg6461, ISSN 2470-9468 Publisher: American Association for the Advancement of Science DOI: 10.1126/sciimmunol.abg6461 Genomic epidemiology of superspreading events in Austria reveals mutational dynamics and transmission properties of SARS-CoV-2 Author(s): Alexandra Popa, Jakob-Wendelin Genger, Michael D. Nicholson, Thomas Penz, Daniela Schmid, Stephan W. Aberle, Benedikt Agerer, Alexander Lercher, Lukas Endler, Henrique Colaço, Mark Smyth, Michael Schuster, Miguel L. Grau, Francisco Martínez-Jiménez, Oriol Pich, Wegene Borena, Erich Pawelka, Zsofia Keszei, Martin Senekowitsch, Jan Laine, Judith H. Aberle, Monika Redlberger-Fritz, Mario Karolyi, Published in: Science Translational Medicine, Issue 12/573, 2020, Page(s) eabe2555, ISSN 1946-6234 Publisher: American Association for the Advancement of Science DOI: 10.1126/scitranslmed.abe2555 High-content CRISPR screening Author(s): Bock C, Datlinger P, Chardon F, Coelho MA, Dong MB, Lawson KA, Lu T, Maroc1 L, Norman TM, Song B, Stanley G, Chen S, Garnett M, Li1 W, Moffat J, Qi LS, Shapiro RS, Shendure J, Weissman JS, Zhuang X Published in: Nature Reviews Methods Primers, 2022, ISSN 2662-8449 Publisher: Nature Publishing Group DOI: 10.1038/s43586-021-00093-4 Single-cell transcriptomics combined with interstitial fluid proteomics defines cell type–specific immune regulation in atopic dermatitis Author(s): Thomas B. Rojahn, Vera Vorstandlechner, Thomas Krausgruber, Wolfgang M. Bauer, Natalia Alkon, Christine Bangert, Felix M. Thaler, Farzaneh Sadeghyar, Nikolaus Fortelny, Victoria Gernedl, Katharina Rindler, Adelheid Elbe-Bürger, Christoph Bock, Michael Mildner, Patrick M. Brunner Published in: Journal of Allergy and Clinical Immunology, Issue 146/5, 2020, Page(s) 1056-1069, ISSN 0091-6749 Publisher: Mosby Inc. DOI: 10.1016/j.jaci.2020.03.041 Ultra-high-throughput single-cell RNA sequencing and perturbation screening with combinatorial fluidic indexing Author(s): Paul Datlinger, André F. Rendeiro, Thorina Boenke, Martin Senekowitsch, Thomas Krausgruber, Daniele Barreca, Christoph Bock Published in: Nature Methods, Issue 18/6, 2021, Page(s) 635-642, ISSN 1548-7091 Publisher: Nature Publishing Group DOI: 10.1038/s41592-021-01153-z Acute BAF perturbation causes immediate changes in chromatin accessibility Author(s): Sandra Schick, Sarah Grosche, Katharina Eva Kohl, Danica Drpic, Martin G. Jaeger, Nara C. Marella, Hana Imrichova, Jung-Ming G. Lin, Gerald Hofstätter, Michael Schuster, André F. Rendeiro, Anna Koren, Mark Petronczki, Christoph Bock, André C. Müller, Georg E. Winter, Stefan Kubicek Published in: Nature Genetics, Issue 53/3, 2021, Page(s) 269-278, ISSN 1061-4036 Publisher: Nature Publishing Group DOI: 10.1038/s41588-021-00777-3 Single-Cell RNA Sequencing Analysis Reveals a Crucial Role for CTHRC1 (Collagen Triple Helix Repeat Containing 1) Cardiac Fibroblasts After Myocardial Infarction Author(s): Adrián Ruiz-Villalba, Juan P. Romero, Silvia C. Hernández, Amaia Vilas-Zornoza, Nikolaus Fortelny, Laura Castro-Labrador, Patxi San Martin-Uriz, Erika Lorenzo-Vivas, Paula García-Olloqui, Marcel Palacio, Juan José Gavira, Gorka Bastarrika, Stefan Janssens, Ming Wu, Elena Iglesias, Gloria Abizanda, Xabier Martinez de Morentin, Miren Lasaga, Nuria Planell, Christoph Bock, Diego Alignani, Gema Me Published in: Circulation, Issue 142/19, 2020, Page(s) 1831-1847, ISSN 0009-7322 Publisher: Lippincott Williams & Wilkins Ltd. DOI: 10.1161/circulationaha.119.044557 DNA methylation heterogeneity defines a disease spectrum in Ewing sarcoma Author(s): Nathan C Sheffield, Gaelle Pierron, Johanna Klughammer, Paul Datlinger, Andreas Schönegger, Michael Schuster, Johanna Hadler, Didier Surdez, Delphine Guillemot, Eve Lapouble, Paul Freneaux, Jacqueline Champigneulle, Raymonde Bouvier, Diana Walder, Ingeborg M Ambros, Caroline Hutter, Eva Sorz, Ana T Amaral, Enrique de Álava, Katharina Schallmoser, Dirk Strunk, Beate Rinner, Bernadette Liegl-Atzwa Published in: Nature Medicine, Issue 23/3, 2017, Page(s) 386-395, ISSN 1078-8956 Publisher: Nature Publishing Group DOI: 10.1038/nm.4273 An ERK-Dependent Feedback Mechanism Prevents Hematopoietic Stem Cell Exhaustion Author(s): Christian Baumgartner, Stefanie Toifl, Matthias Farlik, Florian Halbritter, Ruth Scheicher, Irmgard Fischer, Veronika Sexl, Christoph Bock, Manuela Baccarini Published in: Cell Stem Cell, Issue 22/6, 2018, Page(s) 879-892.e6, ISSN 1934-5909 Publisher: Cell Press DOI: 10.1016/j.stem.2018.05.003 Pooled CRISPR screening with single-cell transcriptome readout Author(s): Paul Datlinger, André F Rendeiro, Christian Schmidl, Thomas Krausgruber, Peter Traxler, Johanna Klughammer, Linda C Schuster, Amelie Kuchler, Donat Alpar, Christoph Bock Published in: Nature Methods, Issue 14/3, 2017, Page(s) 297-301, ISSN 1548-7091 Publisher: Nature Publishing Group DOI: 10.1038/nmeth.4177 Coloc-stats: a unified web interface to perform colocalization analysis of genomic features Author(s): Boris Simovski, Chakravarthi Kanduri, Sveinung Gundersen, Dmytro Titov, Diana Domanska, Christoph Bock, Lara Bossini-Castillo, Maria Chikina, Alexander Favorov, Ryan M Layer, Andrey A Mironov, Aaron R Quinlan, Nathan C Sheffield, Gosia Trynka, Geir K Sandve Published in: Nucleic Acids Research, Issue 46/W1, 2018, Page(s) W186-W193, ISSN 0305-1048 Publisher: Oxford University Press DOI: 10.1093/nar/gky474 VCF.Filter: interactive prioritization of disease-linked genetic variants from sequencing data Author(s): Heiko Müller, Raul Jimenez-Heredia, Ana Krolo, Tatjana Hirschmugl, Jasmin Dmytrus, Kaan Boztug, Christoph Bock Published in: Nucleic Acids Research, Issue 45/W1, 2017, Page(s) W567-W572, ISSN 0305-1048 Publisher: Oxford University Press DOI: 10.1093/nar/gkx425 Assessment of established techniques to determine developmental and malignant potential of human pluripotent stem cells Author(s): Thomas F. Allison1,2, Peter W. Andrews 1, Yishai Avior3, Ivana Barbaric1, Nissim Benvenisty3, Christoph Bock 4,5,6, Jennifer Brehm7, Oliver Brüstle8, Ivan Damjanov 9, Andrew Elefanty10,11, Daniel Felkner7, Paul J. Gokhale1, Florian Halbritter 4, Lyn E. Healy12,13, Tim X. Hu 14, Barbara B. Knowles15,16, Jeanne F. Loring 17, Tenneille E. Ludwig7, Robyn Mayberry10,11, Suzanne Micallef10,11, Jameelah Published in: Nature Communications, Issue 9/1, 2018, ISSN 2041-1723 Publisher: Nature Publishing Group DOI: 10.1038/s41467-018-04011-3 Glioma through the looking GLASS: molecular evolution of diffuse gliomas and the Glioma Longitudinal Analysis Consortium Author(s): Kenneth Aldape, Samirkumar B Amin, David M Ashley, Jill S Barnholtz-Sloan, Amanda J Bates, Rameen Beroukhim, Christoph Bock, Daniel J Brat, Elizabeth B Claus, Joseph F Costello, John F de Groot, Gaetano Finocchiaro, Pim J French, Hui K Gan, Brent Griffith, Christel C Herold-Mende, Craig Horbinski, Antonio Iavarone, Steven N Kalkanis, Konstantina Karabatsou, Hoon Kim, Mathilde C M Kouwenhoven, Kerr Published in: Neuro-Oncology, Issue 20/7, 2018, Page(s) 873-884, ISSN 1522-8517 Publisher: Duke University Press DOI: 10.1093/neuonc/noy020 The DNA methylation landscape of glioblastoma disease progression shows extensive heterogeneity in time and space Author(s): Johanna Klughammer1,37, Barbara Kiesel2,3,37, Thomas Roetzer3,4, Nikolaus Fortelny1, Amelie Nemc1, Karl-Heinz Nenning5, Julia Furtner3,6, Nathan C. Sheffield7, Paul Datlinger1, Nadine Peter3,4, Martha Nowosielski8,9, Marco Augustin10, Mario Mischkulnig2,3, Thomas Ströbel3,4, Donat Alpar1, Bekir Ergüner1, Martin Senekowitsch1, Patrizia Moser11, Christian F. Freyschlag12, Johannes Kerschbaumer12, Published in: Nature Medicine, Issue in press, 2018, ISSN 1078-8956 Publisher: Nature Publishing Group DOI: 10.1038/s41591-018-0156-x RnBeads 2.0: comprehensive analysis of DNA methylation data Author(s): Fabian Müller, Michael Scherer, Yassen Assenov, Pavlo Lutsik, Jörn Walter, Thomas Lengauer, Christoph Bock Published in: Genome Biology, Issue 20/1, 2019, ISSN 1474-760X Publisher: BMC DOI: 10.1186/s13059-019-1664-9 Epigenomics and Single-cell Sequencing Define a Developmental Hierarchy in Langerhans Cell Histiocytosis Author(s): Florian Halbritter, Matthias Farlik, Raphaela Schwentner, Gunhild Jug, Nikolaus Fortelny, Thomas Schnoller, Hanja Pisa, Linda Christina Schuster, Andrea Reinprecht, Thomas Czech, Johannes Gojo, Wolfgang Holter, Milen Minkov, Wolfgang M Bauer, Ingrid Simonitsch-Klupp, Christoph Bock, Caroline Hutter Published in: Cancer Discovery, 2019, Page(s) CD-19-0138, ISSN 2159-8274 Publisher: American Association for Cancer Research Inc. DOI: 10.1158/2159-8290.cd-19-0138 Combined chemosensitivity and chromatin profiling prioritizes drug combinations in CLL Author(s): Christian Schmidl, Gregory I. Vladimer, André F. Rendeiro, Susanne Schnabl, Thomas Krausgruber, Christina Taubert, Nikolaus Krall, Tea Pemovska, Mohammad Araghi, Berend Snijder, Rainer Hubmann, Anna Ringler, Kathrin Runggatscher, Dita Demirtas, Oscar Lopez de la Fuente, Martin Hilgarth, Cathrin Skrabs, Edit Porpaczy, Michaela Gruber, Gregor Hoermann, Stefan Kubicek, Philipp B. Staber, Medhat Sheh Published in: Nature Chemical Biology, Issue 15/3, 2019, Page(s) 232-240, ISSN 1552-4450 Publisher: Nature Publishing Group DOI: 10.1038/s41589-018-0205-2 Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells Author(s): Tahsin Stefan Barakat, Florian Halbritter, Man Zhang, André F. Rendeiro, Elena Perenthaler, Christoph Bock, Ian Chambers Published in: Cell Stem Cell, Issue 23/2, 2018, Page(s) 276-288.e8, ISSN 1934-5909 Publisher: Cell Press DOI: 10.1016/j.stem.2018.06.014 Colocalization analyses of genomic elements: approaches, recommendations and challenges Author(s): Chakravarthi Kanduri, Christoph Bock, Sveinung Gundersen, Eivind Hovig, Geir Kjetil Sandve Published in: Bioinformatics, Issue 35/9, 2018, Page(s) 1615-1624, ISSN 1367-4803 Publisher: Oxford University Press DOI: 10.1093/bioinformatics/bty835 DNA Methylation Dynamics of Human Hematopoietic Stem Cell Differentiation Author(s): Matthias Farlik, Florian Halbritter, Fabian Müller, Fizzah A. Choudry, Peter Ebert, Johanna Klughammer, Samantha Farrow, Antonella Santoro, Valerio Ciaurro, Anthony Mathur, Rakesh Uppal, Hendrik G. Stunnenberg, Willem H. Ouwehand, Elisa Laurenti, Thomas Lengauer, Mattia Frontini, Christoph Bock Published in: Cell Stem Cell, Issue 19/6, 2016, Page(s) 808-822, ISSN 1934-5909 Publisher: Cell Press DOI: 10.1016/j.stem.2016.10.019 Systematic characterization of BAF mutations provides insights into intracomplex synthetic lethalities in human cancers Author(s): Sandra Schick, André F. Rendeiro, Kathrin Runggatscher, Anna Ringler, Bernd Boidol, Melanie Hinkel, Peter Májek, Loan Vulliard, Thomas Penz, Katja Parapatics, Christian Schmidl, Jörg Menche, Guido Boehmelt, Mark Petronczki, André C. Müller, Christoph Bock, Stefan Kubicek Published in: Nature Genetics, Issue 51/9, 2019, Page(s) 1399-1410, ISSN 1061-4036 Publisher: Nature Publishing Group DOI: 10.1038/s41588-019-0477-9 Chromatin mapping and single-cell immune profiling define the temporal dynamics of ibrutinib response in CLL Author(s): André F. Rendeiro, Thomas Krausgruber, Nikolaus Fortelny, Fangwen Zhao, Thomas Penz, Matthias Farlik, Linda C. Schuster, Amelie Nemc, Szabolcs Tasnády, Marienn Réti, Zoltán Mátrai, Donát Alpár, Csaba Bödör, Christian Schmidl, Christoph Bock Published in: Nature Communications, Issue 11/1, 2020, ISSN 2041-1723 Publisher: Nature Publishing Group DOI: 10.1038/s41467-019-14081-6 Structural cells are key regulators of organ-specific immune responses Author(s): Thomas Krausgruber, Nikolaus Fortelny, Victoria Fife-Gernedl, Martin Senekowitsch, Linda C. Schuster, Alexander Lercher, Amelie Nemc, Christian Schmidl, André F. Rendeiro, Andreas Bergthaler, Christoph Bock Published in: Nature, Issue 583/7815, 2020, Page(s) 296-302, ISSN 0028-0836 Publisher: Nature Publishing Group DOI: 10.1038/s41586-020-2424-4 Multimodal analysis of cell-free DNA whole-genome sequencing for pediatric cancers with low mutational burden Author(s): Peter Peneder, Adrian M. Stütz, Didier Surdez, Manuela Krumbholz, Sabine Semper, Mathieu Chicard, Nathan C. Sheffield, Gaelle Pierron, Eve Lapouble, Marcus Tötzl, Bekir Ergüner, Daniele Barreca, André F. Rendeiro, Abbas Agaimy, Heidrun Boztug, Gernot Engstler, Michael Dworzak, Marie Bernkopf, Sabine Taschner-Mandl, Inge M. Ambros, Ola Myklebost, Perrine Marec-Bérard, Susan Ann Burchill, Berna Published in: Nature Communications, Issue 12/1, 2021, ISSN 2041-1723 Publisher: Nature Publishing Group DOI: 10.1038/s41467-021-23445-w Knowledge-primed neural networks enable biologically interpretable deep learning on single-cell sequencing data Author(s): Nikolaus Fortelny, Christoph Bock Published in: Genome Biology, Issue 21/1, 2020, ISSN 1474-760X Publisher: BioMed Central DOI: 10.1186/s13059-020-02100-5 Spontaneously Resolved Atopic Dermatitis Shows Melanocyte and Immune Cell Activation Distinct From Healthy Control Skin Author(s): Katharina Rindler, Thomas Krausgruber, Felix M. Thaler, Natalia Alkon, Christine Bangert, Harald Kurz, Nikolaus Fortelny, Thomas B. Rojahn, Constanze Jonak, Johannes Griss, Christoph Bock, Patrick M. Brunner Published in: Frontiers in Immunology, Issue 12, 2021, ISSN 1664-3224 Publisher: Frontiers Media S.A. DOI: 10.3389/fimmu.2021.630892 The Organoid Cell Atlas Author(s): Christoph Bock, Michael Boutros, J. Gray Camp, Laura Clarke, Hans Clevers, Juergen A. Knoblich, Prisca Liberali, Aviv Regev, Anne C. Rios, Oliver Stegle, Hendrik G. Stunnenberg, Sarah A. Teichmann, Barbara Treutlein, Robert G. J. Vries Published in: Nature Biotechnology, Issue 39/1, 2021, Page(s) 13-17, ISSN 1087-0156 Publisher: Nature Publishing Group DOI: 10.1038/s41587-020-00762-x Intellectual Property Rights Patent (2) METHOD FOR SEQUENCING RNA OLIGONUCLEOTIDES Application/Publication number: 20 20074985 Date: 2020-09-07 METHOD FOR SEQUENCING RNA OLIGONUCLEOTIDES Application/Publication number: 20 20074985 Date: 2020-09-07 Searching for OpenAIRE data... There was an error trying to search data from OpenAIRE No results available
