Population genomics of co-evolution between non-retroviral RNA viruses and their hosts

Project Information

NIRV_HOST_INT

Grant agreement ID: 682394

DOI

10.3030/682394

Project closed

EC signature date 27 April 2016

Start date 1 May 2016

End date 30 April 2022

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost

€ 1 686 875,00

EU contribution

€ 1 686 875,00

Coordinated by

UNIVERSITA DEGLI STUDI DI PAVIA
Italy

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Peer reviewed articles (17)

ViR: a tool to solve intrasample variability in the prediction of viral integration sites using whole genome sequencing data

Author(s): Elisa Pischedda, Cristina Crava, Martina Carlassara, Susanna Zucca, Leila Gasmi, Mariangela Bonizzoni
Published in: BMC Bioinformatics, 2021, ISSN 1471-2105
Publisher: BioMed Central
DOI: 10.1186/s12859-021-03980-5

Population genomics in the arboviral vector Aedes aegypti reveals the genomic architecture and evolution of endogenous viral elements

Author(s): Crava Cristina, Varghese Finny, Pischedda Elisa, Halbach Rebecca, Palatini Umberto, Marconcini Michele, Gasmi Laila, Redmond Seth, Afrane Yaw, Ayala Diego, Paupy Christophe, Carballar-Lejarazu Rebeca, Miesen Pascal, van Rij Ronald, Bonizzoni Mariangela
Published in: Molecular Ecology, 2021, ISSN 0962-1083
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/mec.15798

Endogenous viral elements in mosquito genomes: current knowledge and outstanding questions

Author(s): Umberto Palatini, Claudia A Contreras, Laila Gasmi, Mariangela Bonizzoni
Published in: Current Opinion in Insect Science, 2022, ISSN 2214-5745
Publisher: Elsevier BV
DOI: 10.1016/j.cois.2021.10.007

Cross Talk between Viruses and Insect Cells Cytoskeleton

Author(s): Ayda Khorramnejad, Hugo D. Perdomo, Umberto Palatini, Mariangela Bonizzoni, Laila Gasmi
Published in: Viruses, 2021, ISSN 1999-4915
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13081658

Exploring Changes in the Microbiota of Aedes albopictus: Comparison Among Breeding Site Water, Larvae, and Adults

Author(s): Francesca Scolari, Anna Sandionigi, Martina Carlassara, Antonia Bruno, Maurizio Casiraghi and Mariangela Bonizzoni1*
Published in: Frontiers in Microbiology, 2021, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2021.624170

Leaning Into the Bite: The piRNA Pathway as an Exemplar for the Genetic Engineering Need in Mosquitoes

Author(s): Vanessa M. Macias, Umberto Palatini, Mariangela Bonizzoni, Jason L. Rasgon
Published in: Frontiers in Cellular and Infection Microbiology, Issue 10, 2021, ISSN 2235-2988
Publisher: Frontiers Media S. A.
DOI: 10.3389/fcimb.2020.614342

Endogenous non-retroviral elements in genomes of Aedes mosquitoes and vector competence

Author(s): Vincent Houé, Mariangela Bonizzoni, Anna-Bella Failloux
Published in: Emerging Microbes & Infections, Issue 8/1, 2019, Page(s) 542-555, ISSN 2222-1751
Publisher: Nature Publishing Group
DOI: 10.1080/22221751.2019.1599302

The Widespread Occurrence and Potential Biological Roles of Endogenous Viral Elements in Insect Genomes

Author(s): Carol D. Blair, Ken E. Olson, Mariangela Bonizzoni
Published in: Current Issues in Molecular Biology, 2019, Page(s) 13-30, ISSN 1467-3037
Publisher: Caister Academic Press
DOI: 10.21775/cimb.034.013

Evolution and biological significance of flaviviral elements in the genome of the arboviral vector Aedes albopictus

Author(s): Vincent Houé, Gaelle Gabiane, Catherine Dauga, Marie Suez, Yoann Madec, Laurence Mousson, Michele Marconcini, Pei-Shi Yen, Xavier de Lamballerie, Mariangela Bonizzoni and Anna-Bella Failloux
Published in: Emerging Microbes and Infections, 2019, ISSN 2222-1751
Publisher: Nature Publishing Group
DOI: 10.1080/22221751.2019.1657785

Aedes spp. and Their Microbiota: A Review

Author(s): Francesca Scolari, Maurizio Casiraghi and Mariangela Bonizzoni
Published in: Frontiers in Microbiology, 2019, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2019.02036

Polymorphism analyses and protein modelling inform on functional specialization of Piwi clade genes in the arboviral vector Aedes albopictus

Author(s): Michele Marconcini, Luis Hernandez, Giuseppe Iovino, Vincent Houé, Federica Valerio, Umberto Palatini, Elisa Pischedda, Jacob E. Crawford, Bradley J. White, Teresa Lin, Rebeca Carballar-Lejarazu, Lino Ometto, Federico Forneris, Anna-Bella Failloux, Mariangela Bonizzoni
Published in: PLOS Neglected Tropical Diseases, Issue 13/12, 2019, Page(s) e0007919, ISSN 1935-2735
Publisher: PLOS
DOI: 10.1371/journal.pntd.0007919

Comparative genomics shows that viral integrations are abundant and express piRNAs in the arboviral vectors Aedes aegypti and Aedes albopictus

Author(s): Umberto Palatini, Pascal Miesen, Rebeca Carballar-Lejarazu, Lino Ometto, Ettore Rizzo, Zhijian Tu, Ronald P. van Rij, Mariangela Bonizzoni
Published in: BMC Genomics, Issue 18/1, 2017, ISSN 1471-2164
Publisher: BioMed Central
DOI: 10.1186/s12864-017-3903-3

Nonretroviral integrated RNA viruses in arthropod vectors: an occasional event or something more?

Author(s): Ken E Olson, Mariangela Bonizzoni
Published in: Current Opinion in Insect Science, Issue 22, 2017, Page(s) 45-53, ISSN 2214-5745
Publisher: Elsevier BV
DOI: 10.1016/j.cois.2017.05.010

Tracing temporal and geographic distribution of resistance to pyrethroids in the arboviral vector Aedes albopictus

Author(s): Alessandra Tancredi, Davide Papandrea, Michele Marconcini, Rebeca Carballar-Lejarazu, Mauricio Casas-Martinez, Eugenia Lo, Xiao-Guang Chen, Anna R. Malacrida, Mariangela Bonizzoni
Published in: PLOS Neglected Tropical Diseases, Issue 14/6, 2020, Page(s) e0008350, ISSN 1935-2735
Publisher: PLOS
DOI: 10.1371/journal.pntd.0008350

Thermal biology of invasive Aedes mosquitoes in the context of climate change

Author(s): Chloé Lahondère, Mariangela Bonizzoni
Published in: Current Opinion in Insect Science, 2022, ISSN 2214-5745
Publisher: Elsevier BV
DOI: 10.1016/j.cois.2022.100920

Improved reference genome of the arboviral vector Aedes albopictus

Author(s): Umberto Palatini, Reem A. Masri, Luciano V. Cosme, Sergey Koren, Françoise Thibaud-Nissen, James K. Biedler, Flavia Krsticevic, J. Spencer Johnston, Rebecca Halbach, Jacob E. Crawford, Igor Antoshechkin, Anna-Bella Failloux, Elisa Pischedda, Michele Marconcini, Jay Ghurye, Arang Rhie, Atashi Sharma, Dmitry A. Karagodin, Jeremy Jenrette, Stephanie Gamez, Pascal Miesen, Patrick Masterson, Adalgisa
Published in: Genome Biology, Issue 21/1, 2020, ISSN 1474-760X
Publisher: BMC
DOI: 10.1186/s13059-020-02141-w

Profile of Small RNAs, vDNA Forms and Viral Integrations in Late Chikungunya Virus Infection of Aedes albopictus Mosquitoes

Author(s): Michele MArconcini, Elisa Pischedda, Vincent Houe, Umberto Palatini, Nabor Lozada Chavez, Davide Sogliani, Anna-Bella Failloux, Mariangela Bonizzoni
Published in: Viruses, 2021, ISSN 1999-4915
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13040553

Non-peer reviewed articles (1)

Insights Into an Unexplored Component of the Mosquito Repeatome: Distribution and Variability of Viral Sequences Integrated Into the Genome of the Arboviral Vector Aedes albopictus

Author(s): Elisa Pischedda, Francesca Scolari, Federica Valerio, Rebeca Carballar-Lejarazú, Paolo Luigi Catapano, Robert M. Waterhouse, Mariangela Bonizzoni
Published in: Frontiers in Genetics, Issue 10, 2019, ISSN 1664-8021
Publisher: Frontiers Media
DOI: 10.3389/fgene.2019.00093

Other (1)

Computational methods for the discovery and annotation of viral integrations

Author(s): Umberto Palatini, Elisa Pischedda, Mariangela Bonizzoni
Published in: 2021
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/2021.08.28.458009