INNOVATIVE EPIGENETIC MARKERS FOR FISH DOMESTICATION

Project Information

EPIFISH

Grant agreement ID: 683210

DOI

10.3030/683210

Project closed

EC signature date 29 June 2016

Start date 1 July 2016

End date 30 June 2022

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost

€ 1 996 189,00

EU contribution

€ 1 996 189,00

Coordinated by

NORD UNIVERSITET
Norway

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Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Thesis and dissertations (5)

Changes of fast muscle cellularity in male and female Nile tilapia (Oreochromis niloticus) over three generations of domestication

Author(s): Ramsha Iqbal, Jorge Fernandes, Marit Bjørnevik, Jorge Galindo-Villegas
Published in: 2023
Publisher: Nord University

Exploring epigenetic resistance to infectious salmon anaemia in Atlantic salmon by genome-wide bisulfite sequencing in heart tissue

Author(s): Hans Ekvall, Jorge Fernandes, Ioannis Konstantinidis, Øivind Andersen, Jens Tetens
Published in: 2021
Publisher: NMBU

DNA hydroxymethylation and improved growth of Nile tilapia (Oreochromis niloticus) during domestication

Author(s): Ioannis Konstantinidis, Jorge Fernandes, Pål Sætrom
Published in: PhD in Aquatic Biosciences, Issue 36, 2020, ISBN 978-82-93165-36-1
Publisher: Nord University

Circulating miRNAs as potential non-invasive biomarkers of growth in Nile tilapia (Oreochromis niloticus)

Author(s): Alex Wardale, Jorge Fernandes
Published in: 2019
Publisher: Nord University

Growth associated DNA methylation and hydroxymethylation profiles of the Nile tilapia (Oreochromis niloticus) pituitary uncover potential epigenetic markers

Author(s): Hans Ekvall, Jorge Fernandes
Published in: 2018
Publisher: Nord University

Peer reviewed articles (17)

Nanoencapsulated clove oil applied as an anaesthetic at slaughtering decreases stress, extends the freshness, and lengthens shelf life of cultured fish

Author(s): Amanda Esperanza López-Cánovas, Isabel Cabas, Elena Chaves-Pozo, María Ros-Chumillas, Laura Navarro-Segura, Antonio López-Gómez, Jorge M. O. Fernandes, Jorge Galindo-Villegas, Alfonsa García-Ayala
Published in: Foods, Issue 9, 2020, Page(s) 1750, ISSN 2304-8158
Publisher: MDPI
DOI: 10.3390/foods9121750

Intergenerational transfer of persistent bacterial communities in female Nile tilapia

Author(s): Yousri Abdelhafiz, Jorge Fernandes, Claudio Donati, Massimo Pindo, Viswanath Kiron
Published in: Frontiers in Microbiology, Issue 1664302X, 2022, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2022.879990

Early fish domestication affects methylation of key genes involved in the rapid onset of the farmed phenotype

Author(s): Tomasz Podgorniak; Anusha Dhanasiri; Xianquan Chen; Xu Ren; Pei-Fen Kuan; Jorge Fernandes
Published in: Epigenetics, Issue 15592294, 2022, ISSN 1559-2294
Publisher: Landes Bioscience
DOI: 10.1080/15592294.2021.2017554

Integration of morphometrics and machine learning enables accurate distinction between wild and farmed common carp

Author(s): Omid Jafari; Mansour Ebrahimi; Seyed Ali-Akbar Hedayati; Mehrshad Zeinalabedini; Hadi Poorbagher; Maryam Nasrolahpourmoghadam; Jorge M. O. Fernandes
Published in: Life, Issue 20751729, 2022, ISSN 2075-1729
Publisher: MDPI
DOI: 10.3390/life12070957

Breeding strategy shapes the composition of bacterial communities in female Nile tilapia reared in a recirculating aquaculture system

Author(s): Yousri Abdelhafiz, Jorge Fernandes, Simone Larger, Davide Albanese, Claudio Donati, Omid Jafari, Artem Nedoluzhko, Viswanath Kiron
Published in: Frontiers in Microbiology, Issue 1664302X, 2021, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2021.709611

Function of Circular RNAs in Fish and Their Potential Application as Biomarkers

Author(s): Golam Rbbani, Artem Nedoluzhko, Jorge Galindo-Villegas, Jorge M. O. Fernandes
Published in: International Journal of Molecular Sciences, Issue 22/13, 2021, Page(s) 7119, ISSN 1422-0067
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms22137119

Differences in the fast muscle methylome provide insight into sex-specific epigenetic regulation of growth in Nile tilapia during early stages of domestication

Author(s): Tomasz Podgorniak, Sven Brockmann, Ioannis Konstantinidis, Jorge M. O. Fernandes
Published in: Epigenetics, Issue 14, 2019, Page(s) 1-19, ISSN 1559-2294
Publisher: Landes Bioscience
DOI: 10.1080/15592294.2019.1618164

CircParser: a novel streamlined pipeline for circular RNA structure and host gene prediction in non-model organisms

Author(s): Artem Nedoluzhko, Fedor Sharko, Md. Golam Rbbani, Anton Teslyuk, Ioannis Konstantinidis, Jorge M.O. Fernandes
Published in: PeerJ, Issue 8, 2020, Page(s) e8757, ISSN 2167-8359
Publisher: PeerJ
DOI: 10.7717/peerj.8757

Major gene expression changes and epigenetic remodelling in Nile tilapia muscle after just one generation of domestication

Author(s): Ioannis Konstantinidis, Pål Sætrom, Robin Mjelle, Artem V. Nedoluzhko, Diego Robledo, Jorge M. O. Fernandes
Published in: Epigenetics, Issue 15, 2020, Page(s) 1-16, ISSN 1559-2294
Publisher: Landes Bioscience
DOI: 10.1080/15592294.2020.1748914

A new strain group of common carp: The genetic differences and admixture events between Cyprinus carpio breeds

Author(s): Artem V. Nedoluzhko, Natalia V. Slobodova, Fedor Sharko, Gulmira M. Shalgimbayeva, Svetlana V. Tsygankova, Eugenia S. Boulygina, Zsigmond Jeney, Van Q. Nguyen, Thế T. Pham, Đức T. Nguyen, Alexander A. Volkov, Jorge M.O. Fernandes, Sergey M. Rastorguev
Published in: Ecology and Evolution, Issue 10/12, 2020, Page(s) 5431-5439, ISSN 2045-7758
Publisher: John Wiley and Sons Ltd
DOI: 10.1002/ece3.6286

Genome-wide hydroxymethylation profiles in liver of female Nile tilapia with distinct growth performance

Author(s): Ioannis Konstantinidis, Pål Sætrom, Jorge Fernandes
Published in: Scientific Data, Issue 10, 2023, Page(s) 114, ISSN 2052-4463
Publisher: Springer Nature
DOI: 10.1038/s41597-023-01996-5

Kisspeptin Influences the Reproductive Axis and Circulating Levels of microRNAs in Senegalese Sole

Author(s): Catarina C. V. Oliveira, Elvira Fatsini, Ignacio Fernández, Catarina Anjos, François Chauvigné, Joan Cerdà, Robin Mjelle, Jorge M. O. Fernandes, Elsa Cabrita
Published in: International Journal of Molecular Sciences, Issue 21/23, 2020, Page(s) 9051, ISSN 1422-0067
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms21239051

Phytogenic bioactive compounds shape fish mucosal immunity

Author(s): Jorge Galindo-Villegas, Joana Firmino, Felipe Reyes-López, Enric Gisbert
Published in: Frontiers in Immunology, Issue 16643224, 2021, ISSN 1664-3224
Publisher: Frontiers Media S.A.
DOI: 10.3389/fimmu.2021.695973

Power Play of Commensal Bacteria in the Buccal Cavity of Female Nile Tilapia

Author(s): Yousri Abdelhafiz; Jorge M.O. Fernandes; Erika Stefani; Davide Albanese; Claudio Donati; Viswanath Kiron
Published in: Frontiers in Microbiology, Issue 1664302X, 2021, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2021.773351

Population genomics of introduced Nile tilapia Oreochromis niloticus (Linnaeus, 1758) in the Democratic Republic of the Congo: Repeated introductions since colonial times with multiple sources

Author(s): Mare Geraerts,Carl Vangestel,Tom Artois, Jorge Fernandes, Michiel Jorissen, Auguste Manda, Célestin Mizani, Karen Smeets, Jos Snoeks, Gontran Sonet, Yang Tingbao, Maarten Van Steenberge, Emmanuel Vreven, Soleil Wamuini, Maarten Vanhove,Tine Huyse
Published in: Molecular Ecology, Issue 31, 2022, Page(s) 3304-3322, ISSN 1365-294X
Publisher: John Wiley & Sons Ltd
DOI: 10.1111/mec.16479

The first mitochondrial 5-methylcytosine map in a non-model teleost (Oreochromis niloticus) reveals extensive strand-specific and non-CpG methylation

Author(s): Artem Nedoluzhko, Robin Mjelle, Maria Renström, Kaja H. Skjærven, Francesc Piferrer, Jorge M.O. Fernandes
Published in: Genomics, 2021, ISSN 0888-7543
Publisher: Academic Press
DOI: 10.1016/j.ygeno.2021.07.007

Epigenetic mapping of the somatotropic axis in Nile tilapia reveals differential DNA hydroxymethylation marks associated with growth

Author(s): Ioannis Konstantinidis, Dafni Anastasiadi, Pål Sætrom, Artem V. Nedoluzhko, Robin Mjelle, Tomasz Podgorniak, Francesc Piferrer, Jorge M.O. Fernandes
Published in: Genomics, Issue 113/5, 2021, Page(s) 2953-2964, ISSN 0888-7543
Publisher: Academic Press
DOI: 10.1016/j.ygeno.2021.06.037

Book chapters (1)

Non-coding RNAs in fish physiology and development: miRNAs as a cornerstone in gene networks

Author(s): Francisco Toledo-Solís, Jorge Fernandes, Elena Sarropoulou, Ignacio Fernández
Published in: Cellular and Molecular Approaches in Fish Biology, 2021, Page(s) 105-160, ISBN 9780128222744
Publisher: Academic Press/ Elsevier

Conference proceedings (1)

GIA2018: 5th International Symposium on Genomics in Aquaculture

Author(s): Jorge Fernandes, Elena Sarropoulou, Viswanath Kiron, Deborah Power, John Liu
Published in: Genomics in Aquaculture, 2018
Publisher: CCWP Events Lda

Monographic books (1)

Cellular and Molecular Approaches in Fish Biology

Author(s): Ignacio Fernandez, Jorge Fernandes
Published in: 2021, ISBN 9780128222744
Publisher: Academic Press/ Elsevier