Deliverables Demonstrators, pilots, prototypes (2) Model reactor array The production of a 2D array of bioreactors with sensors and controllers that collectively perceives its environment makes decision about reconfiguration of the reactors contents and performs basic computational primitives with their closest neighbours LIAR hardware LIAR hardware, of MFCs running in both large partition panels and active wall sections capable of performing wastewater treatment, generating electricity and producing biomass. Documents, reports (7) ODACS part 2 and updates These goals extend the project objectivesExploitationQuality control advisory board checksevaluation process and troubleshooting strategyOutreach launch website event schedule professional and publicDesign intentions update hardware software wetware Progress Report Period 1 Period 1 progress report Bioreactor Implementation Report Final Report Progress Report Period 2 Period 2 progress report ODACS part 3 Addition to ODACS with schedule for integration of bioreactors (and evaluation of progress) through design/computation/experimental work ODACS part 1 Outline Design and Contact Specification Document these goals build the team objectivesDesign intentions hardware software wetwareImplementation strategy meeting rota procurement assemblyManagement website document management system communications system Final Report Compiling of final report Websites, patent fillings, videos etc. (1) LIAR website Creation and running of LIAR website Publications Peer reviewed articles (10) FLYCOP: metabolic modeling-based analysis and engineering microbial communities Author(s): Beatriz García-Jiménez, José Luis García, Juan Nogales Published in: Bioinformatics, Issue 34/17, 2018, Page(s) i954-i963, ISSN 1367-4803 Publisher: Oxford University Press DOI: 10.1093/bioinformatics/bty561 Quantifying dynamic mechanisms of auto-regulation in Escherichia coli with synthetic promoter in response to varying external phosphate levels Author(s): Cansu Uluşeker, Jesús Torres-Bacete, José L. García, Martin M. Hanczyc, Juan Nogales, Ozan Kahramanoğulları Published in: Scientific Reports, Issue 9/1, 2019, ISSN 2045-2322 Publisher: Nature Publishing Group DOI: 10.1038/s41598-018-38223-w Living architecture: workshop report from the European Conference on Artificial Life, Lyon, France, 4 September 2017 Author(s): Martin M Hanczyc, Barbara Imhof, Andrew Adamatzky Published in: Adaptive Behavior, Issue 26/2, 2018, Page(s) 85-88, ISSN 1059-7123 Publisher: SAGE Publications DOI: 10.1177/1059712318761518 Regenerated silk fibroin membranes as separators for transparent microbial fuel cells Author(s): Grzegorz Pasternak, Yuejiao Yang, Bruno Bosquiroli Santos, Federico Brunello, Martin M. Hanczyc, Antonella Motta Published in: Bioelectrochemistry, Issue 126, 2019, Page(s) 146-155, ISSN 1567-5394 Publisher: Elsevier BV DOI: 10.1016/j.bioelechem.2018.12.004 Novel method for detecting and quantifying phenol with transient response of glycolytic oscillations of synchronised yeast cells Author(s): Grzegorz Pasternak, Martin M. Hanczyc Published in: Sensing and Bio-Sensing Research, Issue 22, 2019, Page(s) 100259, ISSN 2214-1804 Publisher: Elsevier BV DOI: 10.1016/j.sbsr.2019.100259 Artificial neural network simulating microbial fuel cells with different membrane materials and electrode configurations Author(s): Michail-Antisthenis Tsompanas, Jiseon You, Lauren Wallis, John Greenman, Ioannis Ieropoulos Published in: Journal of Power Sources, Issue 436, 2019, Page(s) 226832, ISSN 0378-7753 Publisher: Elsevier BV DOI: 10.1016/j.jpowsour.2019.226832 Modelling the energy harvesting from ceramic-based microbial fuel cells by using a fuzzy logic approach Author(s): Alberto de Ramón-Fernández, M.J. Salar-García, Daniel Ruiz-Fernández, J. Greenman, I. Ieropoulos Published in: Applied Energy, Issue 251, 2019, Page(s) 113321, ISSN 0306-2619 Publisher: Pergamon Press Ltd. DOI: 10.1016/j.apenergy.2019.113321 Modelling Microbial Fuel Cells using lattice Boltzmann methods Author(s): Michail-Antisthenis Tsompanas, Andy Adamatzky, Ioannis Ieropoulos, Neil Phillips, Georgios Ch. Sirakoulis, John Greenman Published in: IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2018, Page(s) 1-1, ISSN 1545-5963 Publisher: IEEE Computer Society DOI: 10.1109/tcbb.2018.2831223 Cellular non-linear network model of microbial fuel cell Author(s): Michail-Antisthenis Tsompanas, Andrew Adamatzky, Ioannis Ieropoulos, Neil Phillips, Georgios Ch. Sirakoulis, John Greenman Published in: Biosystems, Issue 156-157, 2017, Page(s) 53-62, ISSN 0303-2647 Publisher: Elsevier BV DOI: 10.1016/j.biosystems.2017.04.003 Towards implementation of cellular automata in Microbial Fuel Cells Author(s): Michail-Antisthenis I. Tsompanas, Andrew Adamatzky, Georgios Ch. Sirakoulis, John Greenman, Ioannis Ieropoulos Published in: PLOS ONE, Issue 12/5, 2017, Page(s) e0177528, ISSN 1932-6203 Publisher: Public Library of Science DOI: 10.1371/journal.pone.0177528 Other (3) Genexput: A rapid and standarised method for large genome expansion of Pseudomonas putida Author(s): Mesa-Galán, A., Blázquez, B., Nogales, J. Published in: Biosaia: Revista de los másteres de Biotecnología Sanitaria y Biotecnología Ambiental, Industrial y Alimentaria, Issue vol. 1, no 8, 2019, ISSN 2254-3821 Publisher: Universidad Pablo de Olavide Engineering self-regulated synthetic gene expression systems and its application on controlled protein expression Author(s): Ronco-Campaña, A.; Torres-Bacete, J.; Nogales, J. Published in: Biosaia: Revista de los másteres de Biotecnología Sanitaria y Biotecnología Ambiental, Industrial y Alimentaria, Issue vol. 1, no 8., 2019, ISSN 2254-3821 Publisher: Universidad Pablo de Olavide The inclusion of side metabolic reactions in the genome-scale metabolic model of Pseudomonas putida highlights to underground metabolism as key player in metabolic robustness Author(s): Canalejo, F. J.; Nogales, J. Published in: Biosaia: Revista de los másteres de Biotecnología Sanitaria y Biotecnología Ambiental, Industrial y Alimentaria, Issue vol. 1, no 8, 2019, ISSN 2254-3821 Publisher: Universidad Pablo de Olavide Monographic books (3) Soft Living Architecture - An Alternative View of Bio-informed Practice Author(s): Armstrong,R Published in: 2018, ISBN 978-1-3500-1133-5 Publisher: BLOOMSBURY ACADEMIC DOI: 10.5040/9781350011366 Liquid Life: On Nonlinear Materiality Author(s): Armstrong, R., Ferracina, S., Hughes, R. Published in: 2019 Publisher: Punctum DOI: 10.21983/p3.0246.1.00 Experimental Architecture - Designing the Unknown Author(s): Armstrong, R Published in: 2019, ISBN 9781-351272483 Publisher: ROUTLEDGE DOI: 10.4324/9781351272483 Book chapters (2) Quantifying Information Flow in Chemical Reaction Networks Author(s): Ozan Kahramanoğulları Published in: Algorithms for Computational Biology, Issue 10252, 2017, Page(s) 155-166, ISBN 978-3-319-58162-0 Publisher: Springer International Publishing DOI: 10.1007/978-3-319-58163-7_11 Living Architecture (LIAR): Metabolically engineered building units Author(s): Armstrong R, Ferracina S, Caldwell G, Ieropoulos I, Rimbu G, Adamatzky A, Phillips N, De Lucrezia D, Imhof B, Hanczyc MM, Nogales J, Garcia J. Published in: In: Heisel, F; Hebel, D, ed. Cultivated Building Materials: Industrialized Natural Resources for Architecture and Construction., 2017 Publisher: Birkhauser Conference proceedings (4) A dynamic model of the phosphate response system with synthetic promoters in Escherichia coli Author(s): Cansu Uluşeker, Jesus Torres, José L. García, Martin M. Hanczyc, Juan Nogales, Ozan Kahramanoğulları Published in: Proceedings of the 14th European Conference on Artificial Life ECAL 2017, 2017, Page(s) 412-419, ISBN 978-0-262-34633-7 Publisher: MIT Press DOI: 10.7551/ecal_a_069 Mechanisms of Switching Response to External Phosphate Levels in Escheria coli Author(s): Cansu Uluşeker, Martin M. Hanczyc, Ozan Kahramanoğulları Published in: The 2018 Conference on Artificial Life, 2018, Page(s) 633-640 Publisher: MIT Press DOI: 10.1162/isal_a_00116 QUANTIFYING MECHANISMS OF BACTERIAL PHOSPHATE ECONOMY FOR SYNTHETIC APPS Author(s): Kahramanog ̆ulları O.,. Hanczyc M.M. Published in: enth Conference Dynamical Systems Applied to Biology and Natural Sciences DSABNS, 2019, ISBN 978-989-98750-6-7 Publisher: DSABNS Enumerating Dominant Pathways in Biological Networks by Information Flow Analysis Author(s): Kahramanoğulları O. Published in: International Conference on Algorithms for Computational Biology, Issue 11488, 2019, Page(s) 39-51, ISBN 978-3-030-18173-4 Publisher: Springer DOI: 10.1007/978-3-030-18174-1_3 Searching for OpenAIRE data... There was an error trying to search data from OpenAIRE No results available
