Euro-BioImaging Preparatory Phase II - Project

Project Information

EuBI PPII

Grant agreement ID: 688945

DOI

10.3030/688945

Project closed

EC signature date 9 October 2015

Start date 1 January 2016

End date 31 December 2018

Funded under

• EXCELLENT SCIENCE - Research Infrastructures

Total cost

€ 1 497 910,00

EU contribution

€ 1 497 910,00

Coordinated by

EUROPEAN MOLECULAR BIOLOGY LABORATORY
Germany

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Websites, patent fillings, videos etc. (6)

Web-based UI for IDR, implemented in software and available for use in the released IDR
Web access portal running with all features, including links to the EuBI nodes' online resources
Design of UX and UI for IRP, presented to all participants for feedback as mock-ups.
Web-based UI for IRP, implemented in software and available for use.
Design of UX and UI for IDR, presented to all participants for feedback as mock-ups
Publication of project website

Documents, reports (39)

Procedure for implementation of training of facility staff on identified new emerging imaging technologies
Report on the successful launch meetings of the EuBI Board and Scientific Advisory Board at the EuBI ERIC
First list and description of identified sites for EuBI user training
Hub operational costs/budget
Submission of ERIC application to the EC including EuBI ERIC statutes and all other required documents
Report on potentially interesting new imaging technologies for which user need should be demonstrated
Hub financial contribution scheme
Procedure for identification and evaluation of new Nodes
Report on establishment and first conference call of executive Project Management
Detailed description of the EuBI ERIC executive management (description of all positions, reporting lines, responsibilities and operational procedures in the EuBI ERIC)
Report describing the utility and required updates of existing ontologies for the annotation of experimental manipulations (e.g., EFO) and cell morphologies and phenotypes (e.g., CMPO)

Report describing the utility and required updates of existing ontologies for the annotation of experimental manipulations (e.g., EFO) and cell morphologies and phenotypes (e.g., CMPO). This report will be used to define directions for structured annotations of data submitted to and published in the IDR.

Draft rules of procedure for the EuBI govenance and advisory bodies
Develop internal policies for EuBI governance and advisory bodies
Technical framework set up of EuBI online user access portal with the most central functions
Organization of a meeting of CFS from EuBI Nodes candidates
Report on the set-up of coordination tools for user and CFS access to training activities, including procedures for user application, course evaluation, training sites certification.
Report on Nodes funding scheme for user access
Template for service level agreements for the collaboration between the EuBI Hub and EuBI Nodes
Completion of the EuBI ERIC statutes and general Rules of Procedure by approval of IB
Procedure for the identification of outdated technologies for de-commissioning from the technology portfolio
Publication of the comprehensive communication strategy for Euro-BioImaging operation
Report on the EuBI Preparatory Phase II external communication and outreach activities
Comprehensive testing of the functionality of the user access portal, with connections to nodes and related online tools implemented. Final improvements of the portal and correction measures with several iterations done
Report on the portfolio of identified CFS training courses in lifelong vocational training

Report on the portfolio of identified CFS training courses in lifelong vocational training.

Overall design and technical solutions and practices for the various tasks of the EuBI online user access portal

Overall design and technical solutions and practices for the various tasks of the EuBI online user access portal.

Report on Nodes operational costs/budget
Procedure for enhanced process interoperability for the existing and future technology portfolio
Quality Assurance and Risk Management Plan established
Report on the current status of negotiation and conclusion of service level agreements with the individual EuBI Nodes
Report on successful integration of all EuBI ERIC Hub services (integration and access via web-access portal to all services including image data and training activities)
List of the nominated and ratified 1st generation of EuBI Nodes (including detailed information on each Node)
Report on the implementation of an e-forum and online platform for initial and vocational training and exchange activities on the EuBI web-access portal

Report on the implementation of an e-forum and online platform for initial and vocational training and exchange activities on the EuBI web-access portal.

Report on the procedure for determination of topics and frequency of CFS training on emerging technologies.
Report presenting the first comprehensive catalogue of current and future image data repositories

Report presenting the first comprehensive catalogue of current and future image data repositories in EU institutions and states, covering the domains of biological microscopy, preclinical imaging and medical imaging, and all imaging modalities included in Euro-BioImaging.

Taggathon-Meeting, to update the catalogue of image processing and analysis tools, including their utility and interoperability and image data repositories, including the imaging domains they cover and their current and planned scale and capabilities.
Report on the involvement options of members
Procedure for the identification of new technologies in the fields of biological and medical imaging
Testing of the basic framework of EuBI online user access portal, with the most central links and functions included, and improvements and corrections implemented based on the testing

Testing of the basic framework of EuBI online user access portal, with the most central links and functions included, and improvements and corrections implemented based on the testing.

Recruitment policy and procedure for the senior management staff for EuBI ERIC

Publications

Peer reviewed articles (1)

Image Data Resource: a bioimage data integration and publication platform

Author(s): Eleanor Williams, Josh Moore, Simon W Li, Gabriella Rustici, Aleksandra Tarkowska, Anatole Chessel, Simone Leo, Bálint Antal, Richard K Ferguson, Ugis Sarkans, Alvis Brazma, Rafael E Carazo Salas, Jason R Swedlow
Published in: Nature Methods, Issue 14/8, 2017, Page(s) 775-781, ISSN 1548-7091
Publisher: Nature Publishing Group
DOI: 10.1038/nmeth.4326