Publications Conference proceedings (10) Two years later: the landscape of vocabularies and ontologies in the AgroPortal Author(s): Jonquet, Clement; Toulet, Anne; Emonet, Vincent Published in: 5th International Workshop on sources and data integration in agriculture, food and environment using ontologies (IN-OVIVE @ EFITA 2017), 2017 Publisher: EFITA ICD-10 coding of death certificates with the NCBO and SIFR Annotators at CLEF eHealth 2017 Author(s): Tchechmedjiev, Andon; Abdaoui, Amine; Emonet, Vincent; Jonquet, Clement Published in: Working Notes of CLEF eHealth Evaluation Lab, 2017 Publisher: CEUR AgroPortal: an ontology repository for agronomy Author(s): Jonquet, Clement Published in: European conference dedicated to the future use of ICT in the agri-food sector, bioresource and biomass sector, EFITA'17, demonstration session, 2017 Publisher: EFITA Enrichment of French Biomedical Ontologies with UMLS Concepts and Semantic Types for Biomedical Named Entity Recognition Though Ontological Semantic Annotation Author(s): Tchechmedjiev, Andon; Jonquet, Clement Published in: Language, Ontology, Terminology and Knowledge Structures Workshop (LOKTS 2017), 2017 Publisher: NA PGxO: A very lite ontology to reconcile pharmacogenomic knowledge units Author(s): Monnin, Pierre; Jonquet, Clément; Legrand, Joël; Napoli, Amedeo; Coulet, Adrien Published in: Methods, tools & platforms for Personalized Medicine in the Big Data Era (NETTAB 2017 Workshop), Issue 1, 2017 Publisher: PeerJ DOI: 10.7287/PEERJ.PREPRINTS.3140V1 French ConText: Détecter la négation, la temporalité et le sujet dans les textes cliniques Français Author(s): Abdaoui, Amine; Tchechmedjiev, Andon; Digan, William; Bringay, Sandra; Jonquet, Clement Published in: 4ème Symposium sur l'Ingénierie de l'Information Médicale, SIIM'17, 2017 Publisher: IRIT Challenges for ontology repositories and applications to biomedicine & agronomy Author(s): Jonquet , Clement Published in: SIMBig: Symposium on Information Management and Big Data, Issue 1, 2017 Publisher: None MuEVo, a breast cancer Consumer Health Vocabulary built out of web forums Author(s): Jonquet, Clement; Tapi-Nzali, Mike-Donald; Bringay, Sandra; TAPI NZALI, Mike Donald; Eholié, Solène Published in: A. Paschke; A. Burger; A. Splendiani; M.S. Marshall; P. Romano. SWAT4LS: Semantic Web Applications and Tools for Life Sciences, 2016, Amsterdam, Netherlands. 9th International Semantic Web Applications and Tools for Life Sciences, 2016, Issue 1, 2016, Page(s) 10 Publisher: none Maitriser une technologie de gestion des ontologies et vocabulaires en France : défis et enjeux Author(s): Jonquet , Clement Published in: SemWebPro Conference, Issue 1, 2018, Page(s) 2 Publisher: SemWebPro Projet VisaTM : l'interconnexion OpenMinTeD – AgroPortal – ISTEX, un exemple de service de Text et Data Mining pour les scientifiques français Author(s): Kettani , Fabienne; Schneider , Stéphane; Aubin , Sophie; Bossy , Robert; François , Claire; Jonquet , Clement; Tchechmedjiev , Andon; Toulet , Anne; Nédellec , Claire Published in: 29es Journées Francophones d'Ingénierie des Connaissances, Session poster, Issue 1, 2018, Page(s) 247-249 Publisher: AFIA Other (2) YAM-BIO – Results for OAEI 2017 Author(s): Amina Annane, Zohra Bellahsene, Faiçal Azouaou, Clement Jonquet Published in: System paper Ontology Alignment Evaluation Initiative 2017 Campaign, 2017, Page(s) 5 Publisher: NA Assessing the Practice of Ontology Metadata: A Survey Result Author(s): Anne Toulet; Biswanath Dutta; Clement Jonquet Published in: Issue 1, 2018 Publisher: University of Montpellier and Indian Statistical Institute DOI: 10.5281/zenodo.3484530 Peer reviewed articles (8) NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation Author(s): Marcos Martínez-Romero, Clement Jonquet, Martin J. O’Connor, John Graybeal, Alejandro Pazos, Mark A. Musen Published in: Journal of Biomedical Semantics, Issue 8/1, 2017, Page(s) Journal of Biomedical Semantics, ISSN 2041-1480 Publisher: BMC DOI: 10.1186/s13326-017-0128-y AgroPortal: A vocabulary and ontology repository for agronomy Author(s): Clément Jonquet, Anne Toulet, Elizabeth Arnaud, Sophie Aubin, Esther Dzalé Yeumo, Vincent Emonet, John Graybeal, Marie-Angélique Laporte, Mark A. Musen, Valeria Pesce, Pierre Larmande Published in: Computers and Electronics in Agriculture, Issue 144, 2018, Page(s) 126-143, ISSN 0168-1699 Publisher: Elsevier BV DOI: 10.1016/j.compag.2017.10.012 Building an effective and efficient background knowledge resource to enhance ontology matching Author(s): Amina Annane, Zohra Bellahsene, Faiçal Azouaou, Clement Jonquet Published in: Journal of Web Semantics, Issue 51, 2018, Page(s) 51-68, ISSN 1570-8268 Publisher: Elsevier BV DOI: 10.1016/j.websem.2018.04.001 Enhanced functionalities for annotating and indexing clinical text with the NCBO Annotator+ Author(s): Andon Tchechmedjiev, Amine Abdaoui, Vincent Emonet, Soumia Melzi, Jitendra Jonnagaddala, Clement Jonquet Published in: Bioinformatics, Issue 34/11, 2018, Page(s) 1962-1965, ISSN 1367-4803 Publisher: Oxford University Press DOI: 10.1093/bioinformatics/bty009 Developing data interoperability using standards: A wheat community use case Author(s): Esther Dzale Yeumo, Michael Alaux, Elizabeth Arnaud, Sophie Aubin, Ute Baumann, Patrice Buche, Laurel Cooper, Hanna Ćwiek-Kupczyńska, Robert P. Davey, Richard Allan Fulss, Clement Jonquet, Marie-Angélique Laporte, Pierre Larmande, Cyril Pommier, Vassilis Protonotarios, Carmen Reverte, Rosemary Shrestha, Imma Subirats, Aravind Venkatesan, Alex Whan, Hadi Quesneville Published in: F1000Research, Issue 6, 2017, Page(s) 1843, ISSN 2046-1402 Publisher: F1000 Research Ltd. DOI: 10.12688/f1000research.12234.1 Harnessing the Power of Unified Metadata in an Ontology Repository: The Case of AgroPortal Author(s): Clement Jonquet, Anne Toulet, Biswanath Dutta, Vincent Emonet Published in: Journal on Data Semantics, 2018, Page(s) 1-31, ISSN 1861-2032 Publisher: Springer DOI: 10.1007/s13740-018-0091-5 PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison Author(s): Pierre Monnin, Joël Legrand, Graziella Husson, Patrice Ringot, Andon Tchechmedjiev, Clément Jonquet, Amedeo Napoli, Adrien Coulet Published in: BMC Bioinformatics, Issue 20/S4, 2019, ISSN 1471-2105 Publisher: BioMed Central DOI: 10.1186/s12859-019-2693-9 SIFR annotator: ontology-based semantic annotation of French biomedical text and clinical notes Author(s): Andon Tchechmedjiev, Amine Abdaoui, Vincent Emonet, Stella Zevio, Clement Jonquet Published in: BMC Bioinformatics, Issue 19/1, 2018, ISSN 1471-2105 Publisher: BioMed Central DOI: 10.1186/s12859-018-2429-2 Book chapters (1) New Generation Metadata Vocabulary for Ontology Description and Publication Author(s): Biswanath Dutta, Anne Toulet, Vincent Emonet, Clement Jonquet Published in: Metadata and Semantic Research, Issue 755, 2017, Page(s) 173-185, ISBN 978-3-319-70862-1 Publisher: Springer International Publishing DOI: 10.1007/978-3-319-70863-8_17 Monographic books (1) Proceedings of the 2nd International Workshop on Semantics for Biodiversity, S4BioDiv'17 Author(s): Algergawy, Alsayed; Karam, Naouel; Klan, Friederike; Jonquet, Clement Published in: 2nd International Workshop on Semantics for Biodiversity (S4BioDiv 2017), 2017 Publisher: CEUR Non-peer reviewed articles (1) Semantic Indexing of French Biomedical Data Resources Author(s): Clement Jonquet Published in: Project Repository Journal, Issue 3, 2019, Page(s) 16-19, ISSN 2632-4067 Publisher: EDMA Thesis dissertations (1) Ontology Repository and Ontology-Based Services – Challenges, contributions and applications to biomedicine & agronomy Author(s): Clement Jonquet Published in: University of Montpellier HDR manuscript, 2019 Publisher: University of Montpellier Searching for OpenAIRE data... 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