Semantic Indexing of French Biomedical Data Resources - mobility | SIFRm | Project | Results | H2020 | CORDIS

Two years later: the landscape of vocabularies and ontologies in the AgroPortal

Autori: Jonquet, Clement; Toulet, Anne; Emonet, Vincent
Pubblicato in: 5th International Workshop on sources and data integration in agriculture, food and environment using ontologies (IN-OVIVE @ EFITA 2017), 2017
Editore: EFITA

ICD-10 coding of death certificates with the NCBO and SIFR Annotators at CLEF eHealth 2017

Autori: Tchechmedjiev, Andon; Abdaoui, Amine; Emonet, Vincent; Jonquet, Clement
Pubblicato in: Working Notes of CLEF eHealth Evaluation Lab, 2017
Editore: CEUR

AgroPortal: an ontology repository for agronomy

Autori: Jonquet, Clement
Pubblicato in: European conference dedicated to the future use of ICT in the agri-food sector, bioresource and biomass sector, EFITA'17, demonstration session, 2017
Editore: EFITA

Enrichment of French Biomedical Ontologies with UMLS Concepts and Semantic Types for Biomedical Named Entity Recognition Though Ontological Semantic Annotation

Autori: Tchechmedjiev, Andon; Jonquet, Clement
Pubblicato in: Language, Ontology, Terminology and Knowledge Structures Workshop (LOKTS 2017), 2017
Editore: NA

PGxO: A very lite ontology to reconcile pharmacogenomic knowledge units

Autori: Monnin, Pierre; Jonquet, Clément; Legrand, Joël; Napoli, Amedeo; Coulet, Adrien
Pubblicato in: Methods, tools & platforms for Personalized Medicine in the Big Data Era (NETTAB 2017 Workshop), Numero 1, 2017
Editore: PeerJ
DOI: 10.7287/PEERJ.PREPRINTS.3140V1

French ConText: Détecter la négation, la temporalité et le sujet dans les textes cliniques Français

Autori: Abdaoui, Amine; Tchechmedjiev, Andon; Digan, William; Bringay, Sandra; Jonquet, Clement
Pubblicato in: 4ème Symposium sur l'Ingénierie de l'Information Médicale, SIIM'17, 2017
Editore: IRIT

Challenges for ontology repositories and applications to biomedicine & agronomy

Autori: Jonquet , Clement
Pubblicato in: SIMBig: Symposium on Information Management and Big Data, Numero 1, 2017
Editore: None

MuEVo, a breast cancer Consumer Health Vocabulary built out of web forums

Autori: Jonquet, Clement; Tapi-Nzali, Mike-Donald; Bringay, Sandra; TAPI NZALI, Mike Donald; Eholié, Solène
Pubblicato in: A. Paschke; A. Burger; A. Splendiani; M.S. Marshall; P. Romano. SWAT4LS: Semantic Web Applications and Tools for Life Sciences, 2016, Amsterdam, Netherlands. 9th International Semantic Web Applications and Tools for Life Sciences, 2016, Numero 1, 2016, Pagina/e 10
Editore: none

Maitriser une technologie de gestion des ontologies et vocabulaires en France : défis et enjeux

Autori: Jonquet , Clement
Pubblicato in: SemWebPro Conference, Numero 1, 2018, Pagina/e 2
Editore: SemWebPro

Projet VisaTM : l'interconnexion OpenMinTeD – AgroPortal – ISTEX, un exemple de service de Text et Data Mining pour les scientifiques français

Autori: Kettani , Fabienne; Schneider , Stéphane; Aubin , Sophie; Bossy , Robert; François , Claire; Jonquet , Clement; Tchechmedjiev , Andon; Toulet , Anne; Nédellec , Claire
Pubblicato in: 29es Journées Francophones d'Ingénierie des Connaissances, Session poster, Numero 1, 2018, Pagina/e 247-249
Editore: AFIA

YAM-BIO – Results for OAEI 2017

Autori: Amina Annane, Zohra Bellahsene, Faiçal Azouaou, Clement Jonquet
Pubblicato in: System paper Ontology Alignment Evaluation Initiative 2017 Campaign, 2017, Pagina/e 5
Editore: NA

Assessing the Practice of Ontology Metadata: A Survey Result

Autori: Anne Toulet; Biswanath Dutta; Clement Jonquet
Pubblicato in: Numero 1, 2018
Editore: University of Montpellier and Indian Statistical Institute
DOI: 10.5281/zenodo.3484530

NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation

Autori: Marcos Martínez-Romero, Clement Jonquet, Martin J. O’Connor, John Graybeal, Alejandro Pazos, Mark A. Musen
Pubblicato in: Journal of Biomedical Semantics, Numero 8/1, 2017, Pagina/e Journal of Biomedical Semantics, ISSN 2041-1480
Editore: BMC
DOI: 10.1186/s13326-017-0128-y

AgroPortal: A vocabulary and ontology repository for agronomy

Autori: Clément Jonquet, Anne Toulet, Elizabeth Arnaud, Sophie Aubin, Esther Dzalé Yeumo, Vincent Emonet, John Graybeal, Marie-Angélique Laporte, Mark A. Musen, Valeria Pesce, Pierre Larmande
Pubblicato in: Computers and Electronics in Agriculture, Numero 144, 2018, Pagina/e 126-143, ISSN 0168-1699
Editore: Elsevier BV
DOI: 10.1016/j.compag.2017.10.012

Building an effective and efficient background knowledge resource to enhance ontology matching

Autori: Amina Annane, Zohra Bellahsene, Faiçal Azouaou, Clement Jonquet
Pubblicato in: Journal of Web Semantics, Numero 51, 2018, Pagina/e 51-68, ISSN 1570-8268
Editore: Elsevier BV
DOI: 10.1016/j.websem.2018.04.001

Enhanced functionalities for annotating and indexing clinical text with the NCBO Annotator+

Autori: Andon Tchechmedjiev, Amine Abdaoui, Vincent Emonet, Soumia Melzi, Jitendra Jonnagaddala, Clement Jonquet
Pubblicato in: Bioinformatics, Numero 34/11, 2018, Pagina/e 1962-1965, ISSN 1367-4803
Editore: Oxford University Press
DOI: 10.1093/bioinformatics/bty009

Developing data interoperability using standards: A wheat community use case

Autori: Esther Dzale Yeumo, Michael Alaux, Elizabeth Arnaud, Sophie Aubin, Ute Baumann, Patrice Buche, Laurel Cooper, Hanna Ćwiek-Kupczyńska, Robert P. Davey, Richard Allan Fulss, Clement Jonquet, Marie-Angélique Laporte, Pierre Larmande, Cyril Pommier, Vassilis Protonotarios, Carmen Reverte, Rosemary Shrestha, Imma Subirats, Aravind Venkatesan, Alex Whan, Hadi Quesneville
Pubblicato in: F1000Research, Numero 6, 2017, Pagina/e 1843, ISSN 2046-1402
Editore: F1000 Research Ltd.
DOI: 10.12688/f1000research.12234.1

Harnessing the Power of Unified Metadata in an Ontology Repository: The Case of AgroPortal

Autori: Clement Jonquet, Anne Toulet, Biswanath Dutta, Vincent Emonet
Pubblicato in: Journal on Data Semantics, 2018, Pagina/e 1-31, ISSN 1861-2032
Editore: Springer
DOI: 10.1007/s13740-018-0091-5

PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison

Autori: Pierre Monnin, Joël Legrand, Graziella Husson, Patrice Ringot, Andon Tchechmedjiev, Clément Jonquet, Amedeo Napoli, Adrien Coulet
Pubblicato in: BMC Bioinformatics, Numero 20/S4, 2019, ISSN 1471-2105
Editore: BioMed Central
DOI: 10.1186/s12859-019-2693-9

SIFR annotator: ontology-based semantic annotation of French biomedical text and clinical notes

Autori: Andon Tchechmedjiev, Amine Abdaoui, Vincent Emonet, Stella Zevio, Clement Jonquet
Pubblicato in: BMC Bioinformatics, Numero 19/1, 2018, ISSN 1471-2105
Editore: BioMed Central
DOI: 10.1186/s12859-018-2429-2

New Generation Metadata Vocabulary for Ontology Description and Publication

Autori: Biswanath Dutta, Anne Toulet, Vincent Emonet, Clement Jonquet
Pubblicato in: Metadata and Semantic Research, Numero 755, 2017, Pagina/e 173-185, ISBN 978-3-319-70862-1
Editore: Springer International Publishing
DOI: 10.1007/978-3-319-70863-8_17

Proceedings of the 2nd International Workshop on Semantics for Biodiversity, S4BioDiv'17

Autori: Algergawy, Alsayed; Karam, Naouel; Klan, Friederike; Jonquet, Clement
Pubblicato in: 2nd International Workshop on Semantics for Biodiversity (S4BioDiv 2017), 2017
Editore: CEUR

Semantic Indexing of French Biomedical Data Resources

Autori: Clement Jonquet
Pubblicato in: Project Repository Journal, Numero 3, 2019, Pagina/e 16-19, ISSN 2632-4067
Editore: EDMA

Ontology Repository and Ontology-Based Services – Challenges, contributions and applications to biomedicine & agronomy

Autori: Clement Jonquet
Pubblicato in: University of Montpellier HDR manuscript, 2019
Editore: University of Montpellier

Semantic Indexing of French Biomedical Data Resources - mobility

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