High Performance Soft-tissue Navigation

Project Information

HiPerNav

Grant agreement ID: 722068

DOI

10.3030/722068

Project closed

EC signature date 10 August 2016

Start date 1 November 2016

End date 30 April 2021

Funded under

• EXCELLENT SCIENCE - Marie Skłodowska-Curie Actions

Total cost

€ 4 041 920,04

EU contribution

€ 4 041 920,04

Coordinated by

OSLO UNIVERSITETSSYKEHUS HF
Norway

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Other (2)

Project work plan
Three HiPerNav Schools

Three HiPerNav Schools (M12, M24, M36)

Websites, patent fillings, videos etc. (1)

Website

Documents, reports (3)

Communication report

Communication report (M12, M24, M36, M48)

Training activities final report
Dissemination report

Dissemination report (M12, M24, M36, M48)

Publications

Peer reviewed articles (22)

A Methodical Quantification of Needle Visibility and Echogenicity in Ultrasound Images

Author(s): Nick J. van de Berg, Juan A. Sánchez-Margallo, Arjan P. van Dijke, Thomas Langø, John J. van den Dobbelsteen
Published in: Ultrasound in Medicine & Biology, Issue 45/4, 2019, Page(s) 998-1009, ISSN 0301-5629
Publisher: Elsevier BV
DOI: 10.1016/j.ultrasmedbio.2018.10.004

Accelerating B-spline interpolation on GPUs: Application to medical image registration

Author(s): Orestis Zachariadis, Andrea Teatini, Nitin Satpute, Juan Gómez-Luna, Onur Mutlu, Ole Jakob Elle, Joaquín Olivares
Published in: Computer Methods and Programs in Biomedicine, Issue 193, 2020, Page(s) 105431, ISSN 0169-2607
Publisher: Elsevier BV
DOI: 10.1016/j.cmpb.2020.105431

GPU acceleration of liver enhancement for tumor segmentation

Author(s): Nitin Satpute, Rabia Naseem, Egidijus Pelanis, Juan Gómez-Luna, Faouzi Alaya Cheikh, Ole Jakob Elle, Joaquín Olivares
Published in: Computer Methods and Programs in Biomedicine, Issue 184, 2020, Page(s) 105285, ISSN 0169-2607
Publisher: Elsevier BV
DOI: 10.1016/j.cmpb.2019.105285

Influence of sampling accuracy on augmented reality for laparoscopic image-guided surgery

Author(s): Andrea Teatini, Javier Pérez de Frutos, Benjamin Eigl, Egidijus Pelanis, Davit L. Aghayan, Marco Lai, Rahul Prasanna Kumar, Rafael Palomar, Bjørn Edwin, Ole Jakob Elle
Published in: Minimally Invasive Therapy & Allied Technologies, 2020, Page(s) 1-10, ISSN 1364-5706
Publisher: Taylor & Francis
DOI: 10.1080/13645706.2020.1727524

Mixed reality as a novel tool for diagnostic and surgical navigation in orthopaedics

Author(s): Andrea Teatini, Rahul P. Kumar, Ole Jakob Elle, Ola Wiig
Published in: International Journal of Computer Assisted Radiology and Surgery, Issue 16/3, 2021, Page(s) 407-414, ISSN 1861-6410
Publisher: Springer Verlag
DOI: 10.1007/s11548-020-02302-z

A narrative review on endopancreatic interventions: an innovative access to the pancreas

Author(s): Michael C. Frey, Benjamin Eigl, Daniel C. Steinemann, Thilo Hackert, Fabian Rössler, Felix Nickel, Beat P. Müller-Stich, Kaspar Z’graggen, Philip C. Müller
Published in: Journal of Pancreatology, Issue 4/2, 2021, Page(s) 90-98, ISSN 2096-5664
Publisher: Journal of Pancreatology
DOI: 10.1097/jp9.0000000000000069

Estimation of boundary conditions for patient-specific liver simulation during augmented surgery

Author(s): Sergei Nikolaev, Stephane Cotin
Published in: International Journal of Computer Assisted Radiology and Surgery, Issue 15/7, 2020, Page(s) 1107-1115, ISSN 1861-6410
Publisher: Springer Verlag
DOI: 10.1007/s11548-020-02188-x

A Multimodal Pancreas Phantom for Computer-Assisted Surgery Training

Author(s): Benjamin Eigl, Caroline Haslebacher, Philip C. Muller, Andreas Andreou, Beat Gloor, Matthias Peterhans
Published in: IEEE Open Journal of Engineering in Medicine and Biology, Issue 1, 2020, Page(s) 166-173, ISSN 2644-1276
Publisher: IEEE
DOI: 10.1109/ojemb.2020.2999786

Volumetric Quantitative Ablation Margins for Assessment of Ablation Completeness in Thermal Ablation of Liver Tumors

Author(s): Raluca-Maria Sandu, Iwan Paolucci, Simeon J. S. Ruiter, Raphael Sznitman, Koert P. de Jong, Jacob Freedman, Stefan Weber, Pascale Tinguely
Published in: Frontiers in Oncology, Issue 11, 2021, Page(s) 34, ISSN 2234-943X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fonc.2021.623098

Use of mixed reality for surgery planning: Assessment and development workflow

Author(s): Rahul Prasanna Kumar, Egidijus Pelanis, Robin Bugge, Henrik Brun, Rafael Palomar, Davit L. Aghayan, Åsmund Avdem Fretland, Bjørn Edwin, Ole Jakob Elle
Published in: Journal of Biomedical Informatics: X, Issue 8, 2020, Page(s) 100077, ISSN 2590-177X
Publisher: Elsevier
DOI: 10.1016/j.yjbinx.2020.100077

An open electromagnetic tracking framework applied to targeted liver tumour ablation

Author(s): Stephen Hinds, Herman Alexander Jaeger, Richard Burke, Brodie O’Sullivan, Joseph Keane, Fabian Trauzettel, Bruno Marques, Stéphane Cotin, Brian Bird, Håkon Olav Leira, Erlend Fagertun Hofstad, Ole Vegard Solberg, Thomas Langø, Pádraig Cantillon-Murphy
Published in: International Journal of Computer Assisted Radiology and Surgery, Issue 14/9, 2019, Page(s) 1475-1484, ISSN 1861-6410
Publisher: Springer Verlag
DOI: 10.1007/s11548-019-01983-5

Accelerating Chan–Vese model with cross-modality guided contrast enhancement for liver segmentation

Author(s): Nitin Satpute, Juan Gómez-Luna, Joaquín Olivares
Published in: Computers in Biology and Medicine, Issue 124, 2020, Page(s) 103930, ISSN 0010-4825
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.compbiomed.2020.103930

Evaluation of a novel navigation platform for laparoscopic liver surgery with organ deformation compensation using injected fiducials

Author(s): Egidijus Pelanis, Andrea Teatini, Benjamin Eigl, Alois Regensburger, Amilcar Alzaga, Rahul Prasanna Kumar, Tobias Rudolph, Davit L. Aghayan, Carina Riediger, Niclas Kvarnström, Ole Jakob Elle, Bjørn Edwin
Published in: Medical Image Analysis, Issue 69, 2021, Page(s) 101946, ISSN 1361-8415
Publisher: Elsevier BV
DOI: 10.1016/j.media.2020.101946

Ultrasound Based Planning and Navigation for Non-Anatomical Liver Resections – An Ex-Vivo Study

Author(s): Iwan Paolucci, Raluca-Maria Sandu, Luca Sahli, Gian Andrea Prevost, Federico Storni, Daniel Candinas, Stefan Weber, Anja Lachenmayer
Published in: IEEE Open Journal of Engineering in Medicine and Biology, Issue 1, 2020, Page(s) 3-8, ISSN 2644-1276
Publisher: IEEE
DOI: 10.1109/ojemb.2019.2961094

Effects of Enhancement on Deep Learning Based Hepatic Vessel Segmentation

Author(s): Shanmugapriya Survarachakan, Egidijius Pelanis, Zohaib Amjad Khan, Rahul Prasanna Kumar, Bjørn Edwin, Frank Lindseth
Published in: Electronics, Issue 10/10, 2021, Page(s) 1165, ISSN 2079-9292
Publisher: Electronics MDPI SCImago
DOI: 10.3390/electronics10101165

Laboratory test of Single Landmark registration method for ultrasound-based navigation in laparoscopy using an open-source platform

Author(s): Javier Pérez de Frutos, Erlend F. Hofstad, Ole Vegard Solberg, Geir Arne Tangen, Frank Lindseth, Thomas Langø, Ole Jakob Elle, Ronald Mårvik
Published in: International Journal of Computer Assisted Radiology and Surgery, Issue 13/12, 2018, Page(s) 1927-1936, ISSN 1861-6410
Publisher: Springer Verlag
DOI: 10.1007/s11548-018-1830-7

Laparoscopic parenchyma-sparing liver resection for colorectal metastases

Author(s): Davit L. Aghayan, Egidijus Pelanis, Åsmund Avdem Fretland, Airazat M. Kazaryan, Mushegh A. Sahakyan, Bård I. Røsok, Leonid Barkhatov, Bjørn Atle Bjørnbeth, Ole Jakob Elle, Bjørn Edwin
Published in: Radiology and Oncology, Issue 52/1, 2017, Page(s) 36-41, ISSN 1581-3207
Publisher: www.computing.si (De Gruyter)
DOI: 10.1515/raon-2017-0046

Multi-Operational Selective Computer-Assisted Targeting of hepatocellular carcinoma—Evaluation of a novel approach for navigated tumor ablation

Author(s): Pascale Tinguely, Marius Schwalbe, Torsten Fuss, Dominik P. Guensch, Andreas Kohler, Iris Baumgartner, Stefan Weber, Daniel Candinas
Published in: PLOS ONE, Issue 13/5, 2018, Page(s) e0197914, ISSN 1932-6203
Publisher: Public Library of Science
DOI: 10.1371/journal.pone.0197914

Accelerating sparse matrix–matrix multiplication with GPU Tensor Cores

Author(s): Orestis Zachariadis, Nitin Satpute, Juan Gómez-Luna, Joaquín Olivares
Published in: Computers & Electrical Engineering, Issue 88, 2020, Page(s) 106848, ISSN 0045-7906
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.compeleceng.2020.106848

The effect of intraoperative imaging on surgical navigation for laparoscopic liver resection surgery

Author(s): Andrea Teatini, Egidijus Pelanis, Davit L. Aghayan, Rahul Prasanna Kumar, Rafael Palomar, Åsmund Avdem Fretland, Bjørn Edwin, Ole Jakob Elle
Published in: Scientific Reports, Issue 9/1, 2019, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-019-54915-3

Fast parallel vessel segmentation

Author(s): Nitin Satpute, Rabia Naseem, Rafael Palomar, Orestis Zachariadis, Juan Gómez-Luna, Faouzi Alaya Cheikh, Joaquín Olivares
Published in: Computer Methods and Programs in Biomedicine, Issue 192, 2020, Page(s) 105430, ISSN 0169-2607
Publisher: Elsevier BV
DOI: 10.1016/j.cmpb.2020.105430

Numerical Evaluation on Parametric Choices Influencing Segmentation Results in Radiology Images—A Multi-Dataset Study

Author(s): Pravda Jith Ray Prasad, Shanmugapriya Survarachakan, Zohaib Amjad Khan, Frank Lindseth, Ole Jakob Elle, Fritz Albregtsen, Rahul Prasanna Kumar
Published in: Electronics, Issue 10/4, 2021, Page(s) 431, ISSN 2079-9292
Publisher: Electronics MDPI SCImago
DOI: 10.3390/electronics10040431

Conference proceedings (14)

Learning based contrast enhancement evaluation using cartoon texture decomposition

Author(s): Zohaib Amjad Khan, Azeddine Beghdadi, Mounir Kaaniche, Faouzi Alaya Cheikh
Published in: Proceedings of the 9th European Workshop on Visual Information Processing, 2021
Publisher: IEEE

Cross Modality Guided Liver Image Enhancement of CT Using MRI

Author(s): Rabia Naseem, Faouzi Alaya Cheikh, Azeddine Beghdadi, Ole Jakob Elle, Frank Lindseth
Published in: 2019 8th European Workshop on Visual Information Processing (EUVIP), 2019, Page(s) 46-51, ISBN 978-1-7281-4496-2
Publisher: IEEE
DOI: 10.1109/euvip47703.2019.8946196

Towards a video quality assessment based framework for enhancement of laparoscopic videos

Author(s): Zohaib Amjad Khan, Azeddine Beghdadi, Faouzi Alaya Cheikh, Mounir Kaaniche, Egidijus Pelanis, Rafael Palomar, Åsmund Avdem Fretland, Bjørn Edwin, Ole Jakob Elle
Published in: Medical Imaging 2020: Image Perception, Observer Performance, and Technology Assessment, 2020, Page(s) 23, ISBN 9781510634008
Publisher: SPIE
DOI: 10.1117/12.2549266

Residual Networks Based Distortion Classification and Ranking for Laparoscopic Image Quality Assessment

Author(s): Zohaib Amjad Khan, Azeddine Beghdadi, Mounir Kaaniche, Faouzi Alaya Cheikh
Published in: 2020 IEEE International Conference on Image Processing (ICIP), 2020, Page(s) 176-180, ISBN 978-1-7281-6395-6
Publisher: IEEE
DOI: 10.1109/icip40778.2020.9191111

Corotated meshless implicit dynamics for deformable bodies

Author(s): Jean-Nicolas Brunet, Vincent Magnoux, Benoît Ozell, Stéphane Cotin
Published in: Computer Science Research Notes, 2019, ISBN 9788086943374
Publisher: Západočeská univerzita
DOI: 10.24132/csrn.2019.2901.1.11

A Multi-Criteria Contrast Enhancement Evaluation Measure using Wavelet Decomposition

Author(s): Zohaib Amjad Khan, Azeddine Beghdadi, Faouzi Alaya Cheikh, Mounir Kaaniche, Muhammad Ali Qureshi
Published in: 2020 IEEE 22nd International Workshop on Multimedia Signal Processing (MMSP), 2020, Page(s) 1-6, ISBN 978-1-7281-9320-5
Publisher: IEEE
DOI: 10.1109/mmsp48831.2020.9287051

Joint Statistical Models for No-Reference Stereoscopic Image Quality Assessment

Author(s): Zohaib Amjad Khan, Mounir Kaaniche, Azeddine Beghdadi, Faouzi Alaya Cheikh
Published in: 2018 7th European Workshop on Visual Information Processing (EUVIP), 2018, Page(s) 1-5, ISBN 978-1-5386-6897-9
Publisher: IEEE
DOI: 10.1109/euvip.2018.8611676

Assessment and comparison of target registration accuracy in surgical instrument tracking technologies

Author(s): Teatini A., Perez Frutos de J., Lango T., Edwin B., Elle O.
Published in: 2018 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2018, Page(s) 1845-1848, ISBN 978-1-5386-3646-6
Publisher: IEEE
DOI: 10.1109/EMBC.2018.8512671

Validation of stereo vision based liver surface reconstruction for image guided surgery

Author(s): Teatini Andrea, Wang Congcong, Palomar Rafael, Alaya Cheikh Faouzi, Beghdadi Azeddine, Edwin Bjorn, Elle Ole Jakob
Published in: 2018 Colour and Visual Computing Symposium (CVCS), 2018, Page(s) 1-6, ISBN 978-1-5386-5645-7
Publisher: IEEE
DOI: 10.1109/CVCS.2018.8496589

Liver surface reconstruction from navigated ultrasound during image-guided liver surgery

Author(s): Sahli Luca, Weber Stefan, Paolucci Iwan
Published in: CURAC 2018 17. Jahrestagung der Deutschen Gesellschaft für Computer- und Roboterassistierte Chirurgie, 2018, Page(s) 4-9, ISBN 978-3-00-060786-8
Publisher: CURAC

Framework for the Quantitative Assessment of Image-guided Percutaneous Ablation of Hepatic Lesions

Author(s): Hrabuska, Radek; Sandu, Raluca-Maria; Paolucci, Iwan; Weber, Stefan
Published in: CURAC 2018 Tagungsband der 17. Jahrestagung der Deutschen Gesellschaft für Computer- und Roboterassistierte Chirurgie, 2018, ISBN 978-3-00-060786-8
Publisher: CURAC

Intraoperative ultrasound-based navigation for laparoscopic ablation of liver tumors.

Author(s): Paolucci, Iwan; Schwalbe, Marius; Prevost, Gian Andrea; Lachenmayer, Anja; Candinas, Daniel; Weber, Stefan; Tinguely, Pascale Marie Pia
Published in: British Journal of Surgery, Abstracts of the 105th Annual Congress of the Swiss Society of Surgery, held in Basel, Issue May 2018, 2018, Page(s) 21
Publisher: Wiley

Video Based Instrument Pose Tracking in Navigated Laparoscopic Surgery

Author(s): Gupta Ankit, Paolucci Iwan, Sznitman Raphael, Weber Stefan, Candinas Daniel
Published in: International Hepato-Pancreato-Biliary Association World Congress 2018, 2018
Publisher: IHPBA

Stochastic Correction of Boundary Conditions during Liver Surgery

Author(s): Sergei Nikolaev, Igor Peterlik, Stephane Cotin
Published in: 2018 Colour and Visual Computing Symposium (CVCS), 2018, Page(s) 1-4, ISBN 978-1-5386-5645-7
Publisher: IEEE
DOI: 10.1109/CVCS.2018.8496720

Book chapters (2)

Computer Assistance in the Minimally Invasive Ablation Treatment of Pancreatic Cancer

Author(s): Benjamin Eigl, Andreas Andreou, Matthias Peterhans, Stefan Weber, Beat Gloor
Published in: Pancreatic Cancer [Working Title], 2020
Publisher: IntechOpen
DOI: 10.5772/intechopen.93226

Irreversible Electroporation in Pancreatic Cancer

Author(s): Melanie Holzgang, Benjamin Eigl, Suna Erdem, Beat Gloor, Mathias Worni
Published in: Advances in Pancreatic Cancer, 2018, ISBN 978-1-78923-640-8
Publisher: InTech
DOI: 10.5772/intechopen.75737

Other (1)

Capsule Nets for Complex Medical Image Segmentation Tasks

Author(s): Survarachakan, S.; Johansen, J.S.; Pedersen, M.A.; Amani, M.; Lindseth, F
Published in: 2020 Colour and Visual Computing Symposium (CVCS), 2020
Publisher: CVCS - ceur-ws.org
DOI: 10.6084/m9.figshare.14614833.v1