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The European Nanotechnology Community Informatics Platform: Bridging data and disciplinary gaps for industry and regulators (NanoCommons)

Deliverables

Initial draft of Data management plan (Open data pilot)

Initial draft of Data management plan (Open data pilot)

A workflow and checklist for experimental design and informatics workflow for risk assessment for use in WP9

A workflow and checklist for experimental design and informatics workflow for risk assessment for use in WP9

Initial version of NanoCommons Sustainability Plan

Initial version of NanoCommons Sustainability Plan

Dissemination strategy

Dissemination strategy

A workflow and checklist of key information needed from modelling tool owners to facilitate integration into KB

A workflow and checklist of key information needed from modelling tool owners to facilitate integration into KB

Initial NanoCommons Ontology

Initial NanoCommons Ontology

Interactions Needs and Goals of Nano Safety Projects and Programs

Interactions Needs and Goals of Nano Safety Projects and Programs

1st set of stakeholder workshops and Report on Stakeholder feedback on usability of NanoCommons portal & tools

1st set of stakeholder workshops and Report on Stakeholder feedback on usability of NanoCommons portal & tools

Firstraw data processing and knowledge extraction tools integrated into KB and first theoretical descriptor calculation services available

Firstraw data processing and knowledge extraction tools integrated into KB and first theoretical descriptor calculation services available

First predictive nanoQSAR models integrated into NanoCommons KnowledgeBase

First predictive nanoQSAR models integrated into NanoCommons KnowledgeBase

Initial Knowledge Infrastructure Functionalities and Services Implemented

Initial Knowledge Infrastructure Functionalities and Services Implemented

First version of data warehouse & collaborative knowledge infrastructure

First version of data warehouse & collaborative knowledge infrastructure

First big data (omics) analysis and mining tools integrated into KnowledgeBase

First big data (omics) analysis and mining tools integrated into KnowledgeBase

1st Annual conference & nano-exploitation day, stakeholder workshop & User call

1st Annual conference & nano-exploitation day, stakeholder workshop & User call

Searching for OpenAIRE data...

Publications

A safe-by-design tool for functionalised nanomaterials through the Enalos Nanoinformatics Cloud platform

Author(s): Dimitra-Danai Varsou, Antreas Afantitis, Andreas Tsoumanis, Georgia Melagraki, Haralambos Sarimveis, Eugenia Valsami-Jones, Iseult Lynch
Published in: Nanoscale Advances, Issue Nanoscale Advances, 2019, ISSN 2516-0230
DOI: 10.1039/C8NA00142A

Read-across predictions of nanoparticle hazard endpoints: a mathematical optimization approach

Author(s): Dimitra-Danai Varsou, Antreas Afantitis, Georgia Melagraki, Haralambos Sarimveis
Published in: Nanoscale Advances, 2019, ISSN 2516-0230
DOI: 10.1039/c9na00242a

Zeta‐Potential Read‐Across Model Utilizing Nanodescriptors Extracted via the NanoXtract Image Analysis Tool Available on the Enalos Nanoinformatics Cloud Platform

Author(s): Dimitra‐Danai Varsou, Antreas Afantitis, Andreas Tsoumanis, Anastasios Papadiamantis, Eugenia Valsami‐Jones, Iseult Lynch, Georgia Melagraki
Published in: Small, 2020, Page(s) 1906588, ISSN 1613-6810
DOI: 10.1002/smll.201906588

When Would Immunologists Consider a Nanomaterial to be Safe? Recommendations for Planning Studies on Nanosafety

Author(s): Martin Himly, Mark Geppert, Sabine Hofer, Norbert Hofstätter, Jutta Horejs-Höck, Albert Duschl
Published in: Small, 2020, Page(s) 1907483, ISSN 1613-6810
DOI: 10.1002/smll.201907483

Modeling cell line-specific recruitment of signaling proteins to the insulin-like growth factor 1 receptor

Author(s): Keesha E. Erickson, Oleksii S. Rukhlenko, Md Shahinuzzaman, Kalina P. Slavkova, Yen Ting Lin, Ryan Suderman, Edward C. Stites, Marian Anghel, Richard G. Posner, Dipak Barua, Boris N. Kholodenko, William S. Hlavacek
Published in: PLOS Computational Biology, Issue 15/1, 2019, Page(s) e1006706, ISSN 1553-7358
DOI: 10.1371/journal.pcbi.1006706

The rise of the nanomaterial metabolite corona, and emergence of the complete corona

Author(s): Andrew J. Chetwynd, Iseult Lynch
Published in: Environmental Science: Nano, Issue 7/4, 2020, Page(s) 1041-1060, ISSN 2051-8153
DOI: 10.1039/c9en00938h

An Integrative Computational Approach for a Prioritization of Key Transcription Regulators Associated With Nanomaterial-Induced Toxicity

Author(s): Vadim Zhernovkov, Tapesh Santra, Hilary Cassidy, Oleksii Rukhlenko, David Matallanas, Aleksandar Krstic, Walter Kolch, Vladimir Lobaskin, Boris N Kholodenko
Published in: Toxicological Sciences, Issue 171/2, 2019, Page(s) 303-314, ISSN 1096-6080
DOI: 10.1093/toxsci/kfz151

Mapping connections in signaling networks with ambiguous modularity

Author(s): Daniel Lill, Oleksii S. Rukhlenko, Anthony James Mc Elwee, Eugene Kashdan, Jens Timmer, Boris N. Kholodenko
Published in: npj Systems Biology and Applications, Issue 5/1, 2019, ISSN 2056-7189
DOI: 10.1038/s41540-019-0096-1

Extensive rewiring of the EGFR network in colorectal cancer cells expressing transforming levels of KRASG13D

Author(s): Susan A. Kennedy, Mohamed-Ali Jarboui, Sriganesh Srihari, Cinzia Raso, Kenneth Bryan, Layal Dernayka, Theodosia Charitou, Manuel Bernal-Llinares, Carlos Herrera-Montavez, Aleksandar Krstic, David Matallanas, Max Kotlyar, Igor Jurisica, Jasna Curak, Victoria Wong, Igor Stagljar, Thierry LeBihan, Lisa Imrie, Priyanka Pillai, Miriam A. Lynn, Erik Fasterius, Cristina Al-Khalili Szigyarto, James Breen,
Published in: Nature Communications, Issue 11/1, 2020, ISSN 2041-1723
DOI: 10.1038/s41467-019-14224-9

Dissecting RAF Inhibitor Resistance by Structure-based Modeling Reveals Ways to Overcome Oncogenic RAS Signaling

Author(s): Oleksii S. Rukhlenko, Fahimeh Khorsand, Aleksandar Krstic, Jan Rozanc, Leonidas G. Alexopoulos, Nora Rauch, Keesha E. Erickson, William S. Hlavacek, Richard G. Posner, Silvia Gómez-Coca, Edina Rosta, Cheree Fitzgibbon, David Matallanas, Jens Rauch, Walter Kolch, Boris N. Kholodenko
Published in: Cell Systems, Issue 7/2, 2018, Page(s) 161-179.e14, ISSN 2405-4712
DOI: 10.1016/j.cels.2018.06.002

Semantic Interoperability and Characterization of Data Provenance in Computational Molecular Engineering

Author(s): Martin Thomas Horsch, Christoph Niethammer, Gianluca Boccardo, Paola Carbone, Silvia Chiacchiera, Mara Chiricotto, Joshua D. Elliott, Vladimir Lobaskin, Philipp Neumann, Peter Schiffels, Michael A. Seaton, Ilian T. Todorov, Jadran Vrabec, Welchy Leite Cavalcanti
Published in: Journal of Chemical & Engineering Data, Issue 65/3, 2020, Page(s) 1313-1329, ISSN 0021-9568
DOI: 10.1021/acs.jced.9b00739

D10.1 Initial draft of data management plan (Open data pilot)

Author(s): Papadiamantis, Anastasios; Farcal, Lucian; Willighagen, Egon; Lynch, Iseult; Exner, Thomas
Published in: Deliverable Report, Issue 1, 2018
DOI: 10.5281/zenodo.1479556