Periodic Reporting for period 3 - IntScOmics (A single-cell genomics approach integrating gene expression, lineage, and physical interactions)
Período documentado: 2021-01-01 hasta 2022-06-30
During the first phase of the project we have developed several novel single-cell sequencing methods that allow the detection of cell-cell interactions (ProximID), the detection of nascent RNA (scEU-seq), cell type purification (GateID), and determine the lineage history of thousands of single cells (ScarTrace). This work resulted so far in the publication of eight papers (5 of these in the top journals Nature, Science, and Cell). During the last phase of this project we will build on these new methods to start quantify the epigenome in single cells. This will include both histone modifications and DNA methylation. We will attempt to integrate these new methods as much as possible with our previously developed technologies.
- ProximID (Nature Methods, 2018)
- ScarTrace (Nature, 2018)
- GateID (Cell, 2019)
- scEU-seq (Science, 2020)
- integration of single-cell transcriptomics and tomo-seq in mouse gastruloids (Nature 2020a)
- generation of human gastruloids (Nature, 2020b)
We expect to develop several more technologies in the coming years.