An Integrated Platform for Developing Brain Cancer Diagnostic Techniques

Livrables

Job descriptions and adverts for all Fellows
Kick-off meeting
Report on secondments

Report on secondments listed in Table 1.2c six-monthly

List of complementary local training events

List of complementary local training events six-monthly

Report on network training events

Report on network training events listed in Table 1.2b six-monthly

Public engagement report

Public engagement report for every six month

Project website

Dissemination report

Dissemination report for public

Publications

Extensive patient-to-patient single nucleus transcriptome heterogeneity in pheochromocytomas and paragangliomas

Auteurs: Peter Brazda Cristian Ruiz-Moreno, Wout L. Megchelenbrink, Henri J. L. M. Timmers and Hendrik G. Stunnenberg
Publié dans: Extensive patient-to-patient single nucleus transcriptome heterogeneity in pheochromocytomas and paragangliomas, 2022, ISSN 2234-943X
Éditeur: Frontiers Media S. A.
DOI: 10.3389/fonc.2022.965168

Diffuse large B-cell lymphoma: Time to focus on circulating blood nucleic acids?

Auteurs: Giulia Regazzo, Francesco Marchesi, Manuela Spagnuolo, Ana Belén Díaz Méndez, Serena Masi, Andrea Mengarelli, Maria Giulia Rizzo
Publié dans: Blood Reviews, 2020, Page(s) 100776, ISSN 0268-960X
Éditeur: Churchill Livingstone
DOI: 10.1016/j.blre.2020.100776

Detection of a Double-Stranded MGMT Gene Using Electrochemically Reduced Graphene Oxide (ErGO) Electrodes Decorated with AuNPs and Peptide Nucleic Acids (PNA)

Auteurs: Safarzadeh, M Pan, G
Publié dans: Biosensors, Numéro 12(2), 2022, Page(s) 98, ISSN 2079-6374
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/bios12020098

Large-Scale Analysis Reveals Gene Signature for Survival Prediction in Primary Glioblastoma

Auteurs: Birbal Prasad, Yongji Tian, Xinzhong Li
Publié dans: Molecular Neurobiology, Numéro 57/12, 2020, Page(s) 5235-5246, ISSN 0893-7648
Éditeur: Humana Press, Inc.
DOI: 10.1007/s12035-020-02088-w

Recent Advances in Antifouling Materials for Surface Plasmon Resonance Biosensing in Clinical Diagnostics and Food Safety

Auteurs: D' Agata, Roberta; Bellassai, Noemi; Jungbluth, Vanessa Wilma; Spoto, Giuseppe
Publié dans: Recent Advances in Antifouling Materials for Surface Plasmon Resonance Biosensing in Clinical Diagnostics and Food Safety, Numéro 1, 2021, ISSN 2073-4360
Éditeur: MDPI Polymers
DOI: 10.3390/polym13121929

Label-free immunodetection of α-synuclein by using a microfluidics coplanar electrolyte-gated organic field-effect transistor.

Auteurs: Simona Ricci; Stefano Casalini; Stefano Casalini; Vitaliy Parkula; Meenu Selvaraj; Gulseren Deniz Saygin; Pierpaolo Greco; Fabio Biscarini; Fabio Biscarini; Marta Mas-Torrent
Publié dans: Label-free immunodetection of α-synuclein by using a microfluidics coplanar electrolyte-gated organic field-effect transistor, Numéro 3, 2020, ISSN 0956-5663
Éditeur: Pergamon Press Ltd.
DOI: 10.1016/j.bios.2020.112433

Fused inverse-normal method for integrated differential expression analysis of RNA-seq data

Auteurs: Prasad, Birbal; Li, Xinzhong
Publié dans: Fused inverse-normal method for integrated differential expression analysis of RNA-seq data, Numéro 2, 2022, ISSN 1471-2105
Éditeur: BioMed Central
DOI: 10.1186/s12859-022-04859-9

Time to focus on circulating nucleic acids for diagnosis and monitoring of gliomas: a systematic review of their role as biomarkers

Auteurs: Ana Belén Díaz Méndez, Elisa Tremante, Giulia Regazzo, Sebastian Brandner, Maria Giulia Rizzo
Publié dans: Neuropathology and Applied Neurobiology, 2021, ISSN 0305-1846
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/nan.12691

Ultrasensitive Immunoprofiling of Plasma Extracellular Vesicles Identifies Syndecan-1 as a Potential Tool for Minimally Invasive Diagnosis of Glioma

Auteurs: Vineesh Indira Chandran, Charlotte Welinder, Ann-Sofie Månsson, Svenja Offer, Eva Freyhult, Maria Pernemalm, Sigrid M. Lund, Shona Pedersen, Janne Lehtiö, Gyorgy Marko-Varga, Maria C. Johansson, Elisabet Englund, Pia C. Sundgren, Mattias Belting
Publié dans: Clinical Cancer Research, 2019, ISSN 1078-0432
Éditeur: American Association for Cancer Research
DOI: 10.1158/1078-0432.ccr-18-2946

Surface Plasmon Resonance for Biomarker Detection: Advances in Non-invasive Cancer Diagnosis

Auteurs: Noemi Bellassai, Roberta D'Agata, Vanessa Jungbluth, Giuseppe Spoto
Publié dans: Frontiers in Chemistry, Numéro 7, 2019, ISSN 2296-2646
Éditeur: Frontiers in Chemistry
DOI: 10.3389/fchem.2019.00570

Urinary expression of let-7c cluster as non-invasive tool to assess the risk of disease progression in patients with high grade non-muscle invasive bladder Cancer: a pilot study

Auteurs: Manuela Spagnuolo, Manuela Costantini, Mariaconsiglia Ferriero, Marco Varmi, Isabella Sperduti, Giulia Regazzo, Lucia Cicchillitti, Ana Belén Díaz Méndez, Giovanni Cigliana, Vincenzo Pompeo, Andrea Russo, Valentina Laquintana, Riccardo Mastroianni, Giulia Piaggio, Umberto Anceschi, Aldo Brassetti, Alfredo Bove, Gabriele Tuderti, Rocco Simone Flammia, Michele Gallucci, Giuseppe Simone, Maria Giu
Publié dans: Journal of Experimental & Clinical Cancer Research, Numéro 39/1, 2020, ISSN 1756-9966
Éditeur: BioMed Central/Springer Nature
DOI: 10.1186/s13046-020-01550-w

FO-SPR biosensor calibrated with recombinant extracellular vesicles enables specific and sensitive detection directly in complex matrices

Auteurs: Yildizhan, Y., vajrala, V.S., Edward Geeurickx, E., Declerck, C., Duskunovic, N., De Sutter, D., Noppen, S., Delport, F., Schols, D., Swinnen, J.V., Eyckerman, S., Hendrix, A., Lammertyn, J., Spasic, D.
Publié dans: Journal of Extracellular Vesicles, 2021, ISSN 2001-3078
Éditeur: Wiley
DOI: 10.1002/jev2.12059

A Label-Free DNA-Immunosensor Based on Aminated rGO Electrode for the Quantification of DNA Methylation

Auteurs: Mina Safarzadeh; Ahmed Suhail; Jagriti Sethi; Anas A. Sattar; David Jenkins; Genhua Pan
Publié dans: Nanomaterials, Numéro 11(4), 2021, Page(s) 985, ISSN 2079-4991
Éditeur: MDPI
DOI: 10.3390/nano11040985

Trained innate immunity, long-lasting epigenetic modulation, and skewed myelopoiesis by heme

Auteurs: Elisa Jentho, Cristian Ruiz-Moreno, Boris Novakovic, Ioannis Kourtzelis, Wout. L. Megchelenbrink, Rui Martins, Triantafyllos Chavakis, Miguel P. Soares, Lydia Kalafati, Joel Guerra, Franziska Roestel, Peter Bohm, Maren Godmann, Tatyana Grinenko, Anne Eugster, Martina Beretta, Leo A. B. Joosten , Mihai G. Netea, Michael Bauer, Hendrik G. Stunnenberg Sebastian.Weis@med.uni-jena.de, and Sebastian Wei
Publié dans: Trained innate immunity, long-lasting epigenetic modulation, and skewed myelopoiesis by heme, 2021, ISSN 0027-8424
Éditeur: National Academy of Sciences
DOI: 10.1073/pnas.2102698118

Integrated Multi-omics Analysis Using Variational Autoencoders: Application to Pan-cancer Classification

Auteurs: Xiaoyu Zhang, Jingqing Zhang, Kai Sun, Xian Yang, Chengliang Dai, Yike Guo
Publié dans: 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2019, Page(s) 765-769, ISBN 978-1-7281-1867-3
Éditeur: IEEE
DOI: 10.1109/bibm47256.2019.8983228

EXTRACELLULAR VESICLE DETECTION DIRECTLY IN COMPLEX MATRICES USING FO-SPR SENSOR

Auteurs: Yildizhan, Y., vajrala, V.S., Declerck, C., Geeurickx, E., Noppen, S., Schols, D., Swinnen, J.V., Eyckerman, S., Hendrix, A., Lammertyn, J., Spasic, D.
Publié dans: 2020
Éditeur: MicroTAS

Additional file 1 of Urinary expression of let-7c cluster as non-invasive tool to assess the risk of disease progression in patients with high grade non-muscle invasive bladder Cancer: a pilot study

Auteurs: Spagnuolo, Manuela; Costantini, Manuela; Mariaconsiglia Ferriero; Varmi, Marco; Sperduti, Isabella; Regazzo, Giulia; Cicchillitti, Lucia; Méndez, Ana Belén Díaz; Cigliana, Giovanni; Pompeo, Vincenzo; Russo, Andrea; Laquintana, Valentina; Mastroianni, Riccardo; Piaggio, Giulia; Anceschi, Umberto; Brassetti, Aldo; Bove, Alfredo; Tuderti, Gabriele; Flammia, Rocco Simone; Gallucci, Michele; Simone,
Publié dans: Numéro 1, 2020
Éditeur: BMC Part of Springer Nature
DOI: 10.6084/m9.figshare.12150969.v1

Additional file 2 of Urinary expression of let-7c cluster as non-invasive tool to assess the risk of disease progression in patients with high grade non-muscle invasive bladder Cancer: a pilot study

Auteurs: Spagnuolo, Manuela; Costantini, Manuela; Mariaconsiglia Ferriero; Varmi, Marco; Sperduti, Isabella; Regazzo, Giulia; Cicchillitti, Lucia; Méndez, Ana Belén Díaz; Cigliana, Giovanni; Pompeo, Vincenzo; Russo, Andrea; Laquintana, Valentina; Mastroianni, Riccardo; Piaggio, Giulia; Anceschi, Umberto; Brassetti, Aldo; Bove, Alfredo; Tuderti, Gabriele; Flammia, Rocco Simone; Gallucci, Michele; Simone,
Publié dans: Numéro 1, 2020
Éditeur: BMC part of Springer Nature
DOI: 10.6084/m9.figshare.12150975

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