Breakthroughs in Quantitative Magnetic resonance ImagiNg for improved DEtection of brain Diseases

Project Information

B-Q MINDED

Grant agreement ID: 764513

DOI 10.3030/764513

Project closed

EC signature date 17 August 2017

Start date 1 January 2018

End date 31 March 2022

Funded under

• EXCELLENT SCIENCE - Marie Skłodowska-Curie Actions

Total cost € 3 861 067,32

EU contribution € 3 861 067,32

Coordinated by

UNIVERSITEIT ANTWERPEN
Belgium

Deliverables

Other (1)

Organisation of the Outreach Conference

Documents, reports (3)

PhD degrees

A list of awarded and upcoming PhD degrees to ESRs will be provided

Project Training Meetings Report (I)

Annual Meetings and network-wide training events organized (cf. Table 2.1.c for timings). Comprehensive report on the number of participants, content of courses and speakers etc.

Outreach Activities Report (I)

Report on outreach strategy and ourteach activities to the general public.

Websites, patent fillings, videos etc. (1)

Promotional Materials

Promotional materials such as a project website, flyer, semi-annual newsletters, social media posts etc.

Demonstrators, pilots, prototypes (2)

In silico tissue models for MR relaxometry and dMRI (II)

T15 Developing advanced QMRI simulation tools for method development and biological interpretation LEEDS JUEL UA EMC

JEMRIS as a platform for advanced Q-MRI simulations (II)

T15 Developing advanced QMRI simulation tools for method development and biological interpretation JUEL LEEDS UA EMC

Publications

Peer reviewed articles (9)

A Contrast Augmentation Approach to Improve Multi-Scanner Generalization in MRI.

Author(s): Maria Ines Meyer; Maria Ines Meyer; Ezequiel de la Rosa; Ezequiel de la Rosa; Nuno Pedrosa de Barros; Roberto Paolella; Roberto Paolella; Koen Van Leemput; Koen Van Leemput; Diana M. Sima
Published in: Frontiers in Neuroscience, Vol 15 (2021), Issue 1, 2021, Page(s) 15 (2021) , 15 p., ISSN 1662-4548
Publisher: Frontiers Research Foundation
DOI: 10.3389/fnins.2021.708196

Harmonization of Brain Diffusion MRI: Concepts and Methods.

Author(s): Maíra Siqueira Pinto; Maíra Siqueira Pinto; Roberto Paolella; Roberto Paolella; Thibo Billiet; Pieter Van Dyck; Pieter-Jan Guns; Ben Jeurissen; Annemie Ribbens; Arnold J. den Dekker; Jan Sijbers
Published in: Frontiers in Neuroscience, Vol 14 (2020), Issue 1, 2020, Page(s) 14 (2020) , p. 1-17, ISSN 1662-4548
Publisher: Frontiers Research Foundation

Time efficiency analysis for undersampled quantitative MRI acquisitions

Author(s): Byanju, Riwaj; Klein, Stefan; Cristobal-Huerta, Alexandra; Hernandez-Tamames, J. A.; Poot, Dirk H. J.
Published in: Medical Image Analysis, Issue 1, 2022, Page(s) Volume 78, 2022, 102390, ISSN 1361-8415
Publisher: Elsevier BV
DOI: 10.1016/j.media.2022.102390

Super-Resolution Magnetic Resonance Imaging of the Knee Using 2-Dimensional Turbo Spin Echo Imaging.

Author(s): Pieter Van Dyck; Céline Smekens; Floris Vanhevel; Eline De Smet; Ella Roelant; Jan Sijbers; Ben Jeurissen
Published in: Investigative Radiology, Issue 1, 2020, Page(s) 55 :8 (2020) , p. 481-493, ISSN 0020-9996
Publisher: Lippincott Williams & Wilkins Ltd.
DOI: 10.1097/rli.0000000000000676

Improved diffusion parameter estimation by incorporating T2 relaxation properties into the DKI-FWE model

Author(s): V. Anania, Q. Collier, J. Veraart, A.E. Buikema, F. Vanhevel, T. Billiet, B. Jeurissen, A.J. den Dekker , J. Sijbers
Published in: Neuroimage, 2022, Page(s) Epub ahead of print. PMID: 35447354, ISSN 1053-8119
Publisher: Academic Press
DOI: 10.1016/j.neuroimage.2022.119219

3D CAIPIRINHA SPACE versus standard 2D TSE for routine knee MRI: a large-scale interchangeability study

Author(s): Pieter Van Dyck; Céline Smekens; Ella Roelant; Thijs Vande Vyvere; Annemiek Snoeckx; Eline De Smet
Published in: European radiology, Issue 1, 2022, Page(s) (2022) , p. 1-12, ISSN 0938-7994
Publisher: Springer Verlag
DOI: 10.1007/s00330-022-08715-5

Recurrent inference machines as inverse problem solvers for MR relaxometry

Author(s): E. R. Sabidussi; Stefan Klein; Matthan W.A. Caan; Shabab Bazrafkan; A.J. den Dekker; Jan Sijbers; Wiro J. Niessen; Wiro J. Niessen; Dirk H. J. Poot
Published in: Medical Image Analysis, 74, Issue 1, 2021, Page(s) 74 (2021) 11 p, ISSN 1361-8415
Publisher: Elsevier BV
DOI: 10.1016/j.media.2021.102220

Model-based super-resolution reconstruction with joint motion estimation for improved quantitative MRI parameter mapping

Author(s): Q. Beirinckx, B. Jeurissen, M. Nicastro, D.H.J. Poot, M. Verhoye, A.J. den Dekker, and J. Sijbers
Published in: Computerized Medical Imaging and Graphics, 2022, ISSN 0895-6111
Publisher: Elsevier BV
DOI: 10.1016/j.compmedimag.2022.102071

Assessment of Anterior Cruciate Ligament Graft Maturity With Conventional Magnetic Resonance Imaging: A Systematic Literature Review

Author(s): Pieter Van Dyck, Katja Zazulia, Céline Smekens, Christiaan H.W. Heusdens, Thomas Janssens, Jan Sijbers
Published in: Orthopaedic Journal of Sports Medicine, Issue 7/6, 2019, Page(s) 232596711984901, ISSN 2325-9671
Publisher: Sage Journals
DOI: 10.1177/2325967119849012

Conference proceedings (4)

Phenotype-dependent relationships between cortical macro- and micro-structural neurodegeneration in Frontotemporal Lobar Degeneration

Author(s): K. Placek, V. Anania., T. Van Phan., N. Pedrosa de Barros, T. Billiet, A. Ribbens, A. Simen, A.J. Schwarz.
Published in: Alzheimer’s Association International Conference 2021, 2021
Publisher: ALZ Journals
DOI: 10.1002/alz.051717

An Augmentation Strategy to Mimic Multi-Scanner Variability in MRI

Author(s): Maria Ines Meyer; Ezequiel de la Rosa; Nuno Pedrosa de Barros; Roberto Paolella; Koen Van Leemput; Diana M. Sima
Published in: 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), Issue 5, 2021
Publisher: IEEE
DOI: 10.1109/isbi48211.2021.9433833

Recurrent Inference Machines as Inverse Problem Solvers for MR Relaxometry

Author(s): E.R. Sabidussi, S. Klein, M.W.A. Caan, S. Bazrafkan, A.J. den Dekker, J. Sijbers, W. J. Niessen, D. H.J. Poot
Published in: Medical Imaging with Deep Learning (MIDL) 2021, 2021, Page(s) p. 1-3
Publisher: MIDL

Comparison of MR acquisition strategies for super-resolution reconstruction using the Bayesian Mean Squared Error

Author(s): M. Nicastro, B. Jeurissen, Q. Beirinckx, C. Smekens, D.H.J. Poot, J. Sijbers, and A.J. den Dekker
Published in: Proceedings of the 16th Virtual International Meeting on Fully 3D Image Reconstruction in Radiology and Nuclear Medicine, 19-23 July, 2021, Leuven, Belgium, 2021, Page(s) p. 435-439
Publisher: KU Leuven

Other (22)

B0-inhomogeneity correction for accelerated GRASE scans based on the calibration region

Author(s): R. Byanju, S. Klein, A. Cristobal-Hueta, J.A. Hernandez-Tamames and D.H.J. Poot
Published in: Book of abstracts ESMRMB 2021, Online 38th Annual Scientific Meeting 7–9 October 2021. Magn Reson Mater Phy 34, 2021, Page(s) S55-S56 (2021)
Publisher: Springer
DOI: 10.1007/s10334-021-00947-8

High-resolution T2* mapping of the knee based on UTE Spiral VIBE MRI

Author(s): C. Smekens, Q. Beirinckx, F. Vanhevel, P. Van Dyck, A.J. den Dekker, J. Sijbers, T. Janssens, and B. Jeurissen
Published in: Book of abstracts ESMRMB 2021, Online 38th Annual Scientific Meeting 7–9 October 2021. Magn Reson Mater Phy 34, 2021, Page(s) S33 (2021)
Publisher: Springer

A Recurrent Inference Machine framework to reduce the impact of residual misregistration in Quantitative MRI

Author(s): E.R. Sabidussi, S. Klein, and D.H.J. Poot
Published in: Book of abstracts ESMRMB 2021, Online 38th Annual Scientific Meeting 7–9 October 2021. Magn Reson Mater Phy 34, 2021, Page(s) S51
Publisher: Springer

Performance comparison of monopolar and bipolar readout gradients for T2 quantification

Author(s): S. Shin, S. Dae Yun and N.J. Shah
Published in: Book of abstracts ESMRMB 2021, Online 38th Annual Scientific Meeting 7–9 October 2021. Magn Reson Mater Phy 34, 2021, Page(s) S62-S63 (2021)
Publisher: Springer

Faster Myelin water mapping by joint reconstruction and estimation from highly undersampled 3D GRASE acquisitions

Author(s): R. Byanju, S. Klein, A. Cristobal-Hueta, J.A. Hernandez-Tamames and D.H.J. Poot
Published in: ESMRMB 2020 Online, 37th Annual Scientific Meeting, September 30–October 2 2020, 2020
Publisher: Springer
DOI: 10.1007/s10334-020-00876-y

Effect of varying DWI b-values on prostate lesion segmentation accuracy and robustness

Author(s): M. Postigo Fliquete, J. Tol, V. Fortunati, and A. van Engelen
Published in: Book of abstracts ESMRMB 2021, Online 38th Annual Scientific Meeting 7–9 October 2021. Magn Reson Mater Phy 34, 2021, Page(s) S63-S64 (2021)
Publisher: Springer

Outcome prediction of mild traumatic brain injury using support vector machine based on longitudinal MR diffusion imaging from CENTER-TBI

Author(s): M. Siqueira Pinto, S. Winzeck, S. Richter, M. Correia, E. Kornaropoulos, D. Menon, B. Glocker, P. J. Guns, A. J. den Dekker, J. Sijbers, V. Newcombe, and P. Van Dyck
Published in: Book of abstracts ESMRMB 2021, Online 38th Annual Scientific Meeting 7–9 October 2021. Magn Reson Mater Phy 34, 2021, Page(s) S54 (2021)
Publisher: Springer

Towards accelerating cardiac DTI with undersampled 3D spiral acquisitions and a compressed sensing reconstruction based on joint sparsity

Author(s): S. Golshani, I. Teh, N. Ravikumar, J. Schneider, and A. Frangi
Published in: Book of abstracts ESMRMB 2021, Online 38th Annual Scientific Meeting 7–9 October 2021. Magn Reson Mater Phy 34, 2021, Page(s) S61-S62 (2021)
Publisher: Springer

A deep learning approach to T1 mapping in quantitative MRI

Author(s): E. Ribeiro Sabidussi, M. Nicastro, S. Bazrafkan, Q. Beirinckx, B. Jeurissen, A. J. den Dekker, S. Klein, D. H. J. Poot
Published in: ESMRMB 2019, 36th Annual Scientific Meeting, Rotterdam, The Netherlands, Magn Reson Mater Phy, 2019, 2019, Page(s) S117-S118 vol. 32 (Suppl. 1)
Publisher: Springer
DOI: 10.1007/s10334-019-00754-2

Voxelwise harmonisation of FA on a cohort of 605 healthy subjects using ComBat: an exploratory study

Author(s): M. Siqueira Pinto, Paolella, R., Billiet, T., Van Dyck, P., Guns, P.-J., Jeurissen, B., Ribbens, A., den Dekker, A. J., and Sijbers, J.
Published in: ESMRMB 2019, 36th Annual Scientific Meeting, Rotterdam, The Netherlands, Magn Reson Mater Phy, 2019, 2019, Page(s) vol. 32 (Suppl. 1), S309
Publisher: ESMRMB
DOI: 10.1007/s10334-019-00755-1

Fast and whole-brain T2* mapping using QUTE-EPI at 7T

Author(s): S. Shin, S. Dae Yun and N.J. Shah
Published in: ISMRM 27th Annual Meeting & Exhibition, Montreal, Canada. 2019, 2019
Publisher: ISMRM

Robust outlier detection for diffusion kurtosis MRI based on IRLLS

Author(s): V. Anania, T. Billiet, B. Jeurissen, J. Sijbers and A.J. den Dekker
Published in: ESMRMB 2019, 36th Annual Scientific Meeting, Rotterdam, The Netherlands, Magn Reson Mater Phy, 2019, 2019, Page(s) vol. 32 (Suppl. 1). S397-S398
Publisher: ESMRMB
DOI: 10.1007/s10334-019-00756-0

Study of the impact of various under-sampling patterns on quantitative estimation of tissue parameters using joint reconstruction and estimation

Author(s): R. Byanju, S. Klein, A. Cristobal-Huerta, J.A.Hernandez-Tamames, D.H.J. Poot,
Published in: ISMRM 27th Annual Meeting & Exhibition, Montreal, Canada. 2019, 2019
Publisher: ISMRM

Myocardium numerical phantom at micro-scale: application in MRI simulation

Author(s): M. Lashgari, N. Ravikumar, I. Teh, J. Schneider, and A. Frangi
Published in: Book of abstracts ESMRMB 2021, Online 38th Annual Scientific Meeting 7–9 October 2021. Magn Reson Mater Phy 34, 2021, Page(s) S60-S61 (2021)
Publisher: Springer

Accelerated multi-shot diffusion weighted imaging with joint estimation of diffusion and phase parameters

Author(s): B. Shafieizargar, B. Jeurissen, D.H.J. Poot, J. Van Audekerke, M. Verhoye, A.J. den Dekker, and J. Sijbers
Published in: Book of abstracts ESMRMB 2021, Online 38th Annual Scientific Meeting 7–9 October 2021. Magn Reson Mater Phy 34, 2021, Page(s) S51-S53 (2021)
Publisher: Springer

Decoding Multiple Sclerosis EDSS disability scores from MRI using Deep Learning

Author(s): R. Paollela, E. de la Rosa, D. M. Sima, D. Dive, F. Durand-Dubief, D. Sappey-Marinier, B. Jeurissen, J.Sijbers and T. Billiet
Published in: Book of abstracts ESMRMB 2021, Online 38th Annual Scientific Meeting 7–9 October 2021. Magn Reson Mater Phy 34, 2021, Page(s) S57-S58 (2021)
Publisher: Springer

Outcome Prediction from MR Images after Mild Traumatic Brain Injury via Support Vector Machine: Results from the CENTER-TBI Study

Author(s): M.S. Pinto, S. Winzeck, E.N. Kornaropoulos, B. Glocker, P. Van Dyck, P-J. Guns, D.K. Menon, M.M. Correia, and V.F.J. Newcombe
Published in: ESMRMB 2020 Online, 37th Annual Scientific Meeting, September 30–October 2 2020, 2020, Page(s) S75 (2020)
Publisher: Springer

Optimal experimental design for the T2-weighted diffusion kurtosis imaging free water elimination model

Author(s): V. Anania,, B. Jeurissen, J. Morez, A.E. Buikema. T. Billiet, J. Sijbers, and A. J. den Dekker
Published in: Book of abstracts ESMRMB 2021, Online 38th Annual Scientific Meeting 7–9 October 2021. Magn Reson Mater Phy 34, 2021, Page(s) S54-S55 (2021)
Publisher: Springer

Water content mapping employing super-resolution reconstruction with acquisitions in three orthogonal orientations

Author(s): D. Thomas, A.M. Oros-Peusquens, D.H.J. Poot, and N.J. Shah
Published in: Book of abstracts ESMRMB 2021, Online 38th Annual Scientific Meeting 7–9 October 2021. Magn Reson Mater Phy 34, 2021, Page(s) S58-S59 (2021)
Publisher: Springer

Fast Steady-State Approach for 3D T1 and B1 Mapping with an Updated Optimization Merit Function for an Improved Accuracy and Precision

Author(s): M.A. Zampini and R. Garipov
Published in: ESMRMB 2020 Online, 37th Annual Scientific Meeting, September 30–October 2 2020, 2020, Page(s) S148
Publisher: Springer

EPIFANI for ultrafast B1-corrected T1 and PD mapping

Author(s): M.A. Zampini., J. Sijbers, M. Verhoye, and R. Garipov, “EPIFANI for ultrafast B1-corrected T1 and PD mapping
Published in: Book of abstracts ESMRMB 2021, Online 38th Annual Scientific Meeting 7–9 October 2021. Magn Reson Mater Phy 34, 2021, Page(s) S59-S60 (2021)
Publisher: Springer

Decoding the EDSS Scores of Multiple Sclerosis Patients from MRI Biomarkers

Author(s): R. Paolella E. De La Rosa, V. Anania, S. Denissen, J. Van Schependom, G. Nagels, D. Dive, F. Durand-Dubief, D. Sappey-Marinier, D. Smeets, and D. Sima
Published in: ECTRIMS/ACTIRMS 2020, 2020, Page(s) P0005
Publisher: Sage Journals