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Translational Brain Imaging Training Network

Deliverables

Transferable skills courses 3-4

Transferable skills courses 3-4

Scientific courses 1-4

Scientific courses 1-4

Scientific courses 5-8

Scientific courses 5-8

Transferable skills courses 1-2

Transferable skills courses 1-2

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Publications

ESMRMB 2019, 36th Annual Scientific Meeting, Rotterdam, NL, October 3–October 5: Abstracts, Thursday

Author(s): A. Zhylka, A. Leemans, J. Pluim, A. De Luca
Published in: Magnetic Resonance Materials in Physics, Biology and Medicine, Issue 32/S1, 2019, Page(s) 1-105, ISSN 0968-5243
DOI: 10.1007/s10334-019-00753-3

Harmonization of Brain Volumes from Magnetic Resonance Images of Multiple Sclerosis Patients Using Image Descriptors

Author(s): Maria Ines Meyer, Ezequiel de la Rosa, Greg Dudra, Eline Van Vlierberghe, Koen Van Leemput, Diana M. Sima
Published in: International Journal of MS case, Issue Vol 21, 2019, Page(s) Pp 51

Deep learning-based detection of cortical lesions in multiple sclerosis patients with FLAIR, DIR, and MP2RAGE MRI sequences.

Author(s): F. La Rosa, M.J. Fartaria, A. Abdulkadir, R. Rahmanzadeh,, P.-J. Lu, R. Galbusera, C. Granziera, J.-P. Thiran, M. Bach Cuadra
Published in: ECTRIMS proceedings in Multiple Sclerosis Journal, 2019

Muti-shell Diffusion MRI Harmonisation and Enhancement Challenge (MUSHAC): Progress and Results

Author(s): Lipeng Ning, Elisenda Bonet-Carne, Francesco Grussu, Farshid Sepehrband, Enrico Kaden, Jelle Veraart, Stefano B. Blumberg, Can Son Khoo, Marco Palombo, Jaume Coll-Font, Benoit Scherrer, Simon K. Warfield, Suheyla Cetin Karayumak, Yogesh Rathi, Simon Koppers, Leon Weninger, Julia Ebert, Dorit Merhof, Daniel Moyer, Maximilian Pietsch, Daan Christiaens, Rui Teixeira, Jacques-Donald Tournier, Andrey Z
Published in: Computational Diffusion MRI - International MICCAI Workshop, Granada, Spain, September 2018, 2019, Page(s) 217-224
DOI: 10.1007/978-3-030-05831-9_18

Neural Parameters Estimation for Brain Tumor Growth Modeling

Author(s): Ivan Ezhov, Jana Lipkova, Suprosanna Shit, Florian Kofler, Nore Collomb, Benjamin Lemasson, Emmanuel Barbier, Bjoern Menze
Published in: Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Shenzhen, China, October 13–17, 2019, Proceedings, Part II, Issue 11765, 2019, Page(s) 787-795
DOI: 10.1007/978-3-030-32245-8_87

Robust Biophysical Parameter Estimation with a Neural Network Enhanced Hamiltonian Markov Chain Monte Carlo Sampler

Author(s): Thomas Yu, Marco Pizzolato, Gabriel Girard, Jonathan Rafael-Patino, Erick Jorge Canales-Rodríguez, Jean-Philippe Thiran
Published in: Information Processing in Medical Imaging - 26th International Conference, IPMI 2019, Hong Kong, China, June 2–7, 2019, Proceedings, Issue 11492, 2019, Page(s) 818-829
DOI: 10.1007/978-3-030-20351-1_64

Shape-Aware Complementary-Task Learning for Multi-organ Segmentation

Author(s): Fernando Navarro, Suprosanna Shit, Ivan Ezhov, Johannes Paetzold, Andrei Gafita, Jan C. Peeken, Stephanie E. Combs, Bjoern H. Menze
Published in: Machine Learning in Medical Imaging - 10th International Workshop, MLMI 2019, Held in Conjunction with MICCAI 2019, Shenzhen, China, October 13, 2019, Proceedings, Issue 11861, 2019, Page(s) 620-627
DOI: 10.1007/978-3-030-32692-0_71

A novel segmentation framework for uveal melanoma in magnetic resonance imaging based on class activation maps

Author(s): Huu-Giao Nguyen, Alessia Pica, Jan Hrbacek, Damien C. Weber, Francesco La Rosa, Ann Schalenbourg, Raphael Sznitman, Meritxell Bach Cuadra
Published in: MIDL2019, 2019

Quantifying Residual Motion Artifacts in Fetal fMRI Data

Author(s): Athena Taymourtash, Ernst Schwartz, Karl-Heinz Nenning, Daniel Sobotka, Mariana Diogo, Gregor Kasprian, Daniela Prayer, Georg Langs
Published in: Smart Ultrasound Imaging and Perinatal, Preterm and Paediatric Image Analysis - First International Workshop, SUSI 2019, and 4th International Workshop, PIPPI 2019, Held in Conjunction with MICCAI 2019, Shenzhen, China, October 13 and 17, 2019, Proceedings, Issue 11798, 2019, Page(s) 171-180
DOI: 10.1007/978-3-030-32875-7_19

Relevance Vector Machines for Harmonization of MRI Brain Volumes Using Image Descriptors

Author(s): Maria Ines Meyer, Ezequiel de la Rosa, Koen Van Leemput, Diana M. Sima
Published in: OR 2.0 Context-Aware Operating Theaters and Machine Learning in Clinical Neuroimaging - Second International Workshop, OR 2.0 2019, and Second International Workshop, MLCN 2019, Held in Conjunction with MICCAI 2019, Shenzhen, China, October 13 and 17, 2019, Proceedings, Issue 11796, 2019, Page(s) 77-85
DOI: 10.1007/978-3-030-32695-1_9

Implicit Neural Solver for Time-dependent Linear PDEs with Convergence Guarantee

Author(s): Suprosanna Shit, Abinav Ravi Venkatakrishnan, Ivan Ezhov, Jana Lipkova, Marie Piraud, Bjoern Menze
Published in: NeurIPS 2019, 2019

Incompressible Image Registration Using Divergence-Conforming B-Splines

Author(s): Lucas Fidon, Michael Ebner, Luis C. Garcia-Peraza-Herrera, Marc Modat, Sébastien Ourselin, Tom Vercauteren
Published in: Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Shenzhen, China, October 13–17, 2019, Proceedings, Part II, Issue 11765, 2019, Page(s) 438-446
DOI: 10.1007/978-3-030-32245-8_49

Robust T 2 Relaxometry With Hamiltonian MCMC for Myelin Water Fraction Estimation

Author(s): Thomas Yu, Marco Pizzolato, Erick Jorge Canales-Rodriguez, Jean-Philippe Thiran
Published in: 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), 2019, Page(s) 1813-1817
DOI: 10.1109/isbi.2019.8759446

Shallow vs Deep Learning Architectures for White Matter Lesion Segmentation in the Early Stages of Multiple Sclerosis

Author(s): Francesco La Rosa, Mário João Fartaria, Tobias Kober, Jonas Richiardi, Cristina Granziera, Jean-Philippe Thiran, Meritxell Bach Cuadra
Published in: Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 4th International Workshop, BrainLes 2018, Held in Conjunction with MICCAI 2018, Granada, Spain, September 16, 2018, Revised Selected Papers, Part I, Issue 11383, 2019, Page(s) 142-151
DOI: 10.1007/978-3-030-11723-8_14

clDice - a Novel Connectivity-Preserving Loss Function for Vessel Segmentation

Author(s): Johannes Paetzold, Suprosanna Shit, Ivan Ezhov, Giles Tetteh, Ali Ertuerk, Bjoern Menze
Published in: NeurIPS 2019, 2019

A Radiomics Approach to Traumatic Brain Injury Prediction in CT Scans

Author(s): Ezequiel de la Rosa, Diana M. Sima, Thijs Vande Vyvere, Jan S. Kirschke, Bjoern Menze
Published in: Proceedings IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019). Apr. 2019, IEEE., 2019, Page(s) pp. 732-735
DOI: 0.1109/isbi.2019.8759229

Segmentation-based registration of ultrasound volumes for glioma resection in image-guided neurosurgery

Author(s): Luca Canalini, Jan Klein, Dorothea Miller, Ron Kikinis
Published in: International Journal of Computer Assisted Radiology and Surgery, Issue 14/10, 2019, Page(s) 1697-1713, ISSN 1861-6410
DOI: 10.1007/s11548-019-02045-6

A modality-adaptive method for segmenting brain tumors and organs-at-risk in radiation therapy planning

Author(s): Mikael Agn, Per Munck af Rosenschöld, Oula Puonti, Michael J. Lundemann, Laura Mancini, Anastasia Papadaki, Steffi Thust, John Ashburner, Ian Law, Koen Van Leemput
Published in: Medical Image Analysis, Issue 54, 2019, Page(s) 220-237, ISSN 1361-8415
DOI: 10.1016/j.media.2019.03.005

Registration of Ultrasound Volumes Based on Euclidean Distance Transform

Author(s): Luca Canalini, Jan Klein, Dorothea Miller, Ron Kikinis
Published in: Large-Scale Annotation of Biomedical Data and Expert Label Synthesis and Hardware Aware Learning for Medical Imaging and Computer Assisted Intervention - International Workshops, LABELS 2019, HAL-MICCAI 2019, and CuRIOUS 2019, Held in Conjunction with MICCAI 2019, Shenzhen, China, October 13 and 17, 2019, Proceedings, Issue 11851, 2019, Page(s) 127-135
DOI: 10.1007/978-3-030-33642-4_14