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CORDIS - EU research results
CORDIS

Epigenetics and System Biology of Stem cells and Reprogramming

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

2nd Annual meeting report (opens in new window)

Summary of 2nd annual meting

Single cell & MS technologies workshop summary (opens in new window)

Preparation an conclusion of the Single cell & MS Technologies Workshop

final meeting report (opens in new window)

Final EpiSyStem meeting report

3rd Annual meeting report (opens in new window)

Summary of 3rd annual meeting

ES/iPS cells workshop summary (opens in new window)

Preparation and conclusion of ESiPS Cell Workshop

The Jerusalem Summer School summary (opens in new window)

Preparation and conclusion of The Jerusalem Life Science Summer School

Supervisory Board of the network (opens in new window)

Nomination of supervisory board members

Chromatin dynamics and epigenetics course report (opens in new window)

Preparation and conclusion of Chromatin Dynamics and Epigenetics Course

Progress report (opens in new window)

Progress in the first year of the project.

Reprogramming and disease modelling workshop summary (opens in new window)

Preparation and conclusion of the Reprogramming and Disease Modelling Workshop

Histone variants and genome regulation workshop summary (opens in new window)

Preparation and conclusion of the Reprogramming and Disease Modelling Workshop

Research plan summaries (opens in new window)

Research plan preparation and approval

Bioinformatics workshop summary (opens in new window)

Preparation and conclusion of the Bioinformatics Workshop

Epigenetics workshop summary (opens in new window)

Preparation and conclusion of Epigenetics Workshop

Publication in scientific journals (opens in new window)

List of the networks publications in peerreviewed scientific journals

Outreach-activities summary (opens in new window)

Summary of outreach activities efforts

Grant of PhD degrees (opens in new window)

Monitoring of the PhD degrees awarded to the ESRs

1st Annual meeting report (opens in new window)

Summary of first annual meeting

New Media activities report (opens in new window)

Summary of the new Media disseminations activities Facebook Tweeter Instagram

Kickoff Meeting (opens in new window)

Kickoff meeting report

Public engagement efforts (opens in new window)

Summary of the public engagement efforts

Spetses Summer School (opens in new window)

Co-Organisation of the Spetses Summer School with another ITN Network, ChroMe, focused on metabolism and chromatin, managed by Andreas Ladurner and Markus Buschbeck. As a part of our collaboration, we agreed to contribute at least three faculty members to participate in the Spetses summer school, and we will be sending all our ESRs there. EpiSyStem will contribute around 1K Euros for each ESR and the participating PIs will cover their own travel and accommodation expenses using the EpiSyStem budget.

International conference (opens in new window)

Preparation and conclusion of the international conference

Publications

CloneSeq: A highly sensitive analysis platform for the characterization of 3D-cultured single-cell-derived clones (opens in new window)

Author(s): Danny Bavli, Xue Sun, Chen Kozulin, Dena Ennis, Alex Motzik, Alva Biran, Shlomi Brielle, Adi Alajem, Eran Meshorer, Amnon Buxboim, Oren Ram
Published in: Developmental Cell, Issue 56, 2021, Page(s) 1804–1817, ISSN 1534-5807
Publisher: Cell Press
DOI: 10.1016/j.devcel.2021.04.026

Embryonic Stem Cell Differentiation Is Regulated by SET through Interactions with p53 and β-Catenin (opens in new window)

Author(s): Arigela Harikumar, Patrick S.L. Lim, Malka Nissim-Rafinia, Jung Eun Park, Siu Kwan Sze, Eran Meshorer
Published in: Stem Cell Reports, Issue 15/6, 2020, Page(s) 1260-1274, ISSN 2213-6711
Publisher: Cell Press
DOI: 10.1016/j.stemcr.2020.11.004

Mass spectrometry reveals the chemistry of formaldehyde cross-linking in structured proteins. (opens in new window)

Author(s): Tamar Tayri-Wilk; Moriya Slavin; Joanna Zamel; Ayelet Blass; Shon Cohen; Alex Motzik; Xue Sun; Deborah E. Shalev; Oren Ram; Nir Kalisman
Published in: Nature Communications, Issue 1, 2020, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-020-16935-w

Dppa2 and Dppa4 safeguard bivalent chromatin in order to establish a pluripotent epigenome (opens in new window)

Author(s): Patrick S L Lim and Eran Meshorer
Published in: Nature Structural & Molecular Biology, Issue 15459993, 2020, Page(s) 685-686, ISSN 1545-9993
Publisher: Nature Publishing Group
DOI: 10.1038/s41594-020-0453-1

The molecular and cellular features of 2-cell-like cells: a reference guide (opens in new window)

Author(s): Marion Genet, Maria-Elena Torres-Padilla
Published in: Development, Issue 09501991, 2020, Page(s) dev189688., ISSN 0950-1991
Publisher: The Company of Biologists Ltd.
DOI: 10.1242/dev.189688

Seizure activity and brain damage in a model of focal non‐convulsive status epilepticus (opens in new window)

Author(s): Diogo Vila Verde; Till S. Zimmer; Alessandro Cattalini; Marlene F Pereira; Marlene F Pereira; Erwin A. van Vliet; Giuseppe Testa; Giuseppe Testa; Vadym Gnatkovsky; Eleonora Aronica; Marco de Curtis
Published in: Neuropathology and applied neurobiology, Issue 47:5, 2021, Page(s) 679-693, ISSN 0305-1846
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/nan.12693

Identifying Readers for (hydroxy)methylated DNA Using Quantitative Interaction Proteomics: Advances and Challenges Ahead. (opens in new window)

Author(s): Velin Marita Sequeira; Michiel Vermeulen
Published in: Journal of Molecular Biology, Issue 00222836, 2020, Page(s) 1792-1800, ISSN 0022-2836
Publisher: Academic Press
DOI: 10.1016/j.jmb.2019.12.014

Dosage analysis of the 7q11.23 Williams region identifies BAZ1B as a major human gene patterning the modern human face and underlying self-domestication (opens in new window)

Author(s): Matteo Zanella, Alessandro Vitriolo, Alejandro Andirko, Pedro Tiago Martins, Stefanie Sturm, Thomas O’Rourke, Magdalena Laugsch, Natascia Malerba, Adrianos Skaros, Sebastiano Trattaro, Pierre-Luc Germain, Marija Mihailovic, Giuseppe Merla, Alvaro Rada-Iglesias, Cedric Boeckx, Giuseppe Testa
Published in: Science Advances, Issue 5/12, 2019, Page(s) eaaw7908, ISSN 2375-2548
Publisher: American Association for the Advancement of Science
DOI: 10.1126/sciadv.aaw7908

Organization of the Pluripotent Genom (opens in new window)

Author(s): Patrick S.L. Lim and Eran Meshorer
Published in: Cold Spring Harbor Perspectives in Biology, Issue 19430264, 2021, Page(s) a040204, ISSN 1943-0264
Publisher: Cold Spring Harbor Laboratory Press
DOI: 10.1101/cshperspect.a040204

Esrrb is a cell-cycle-dependent associated factor balancing pluripotency and XEN differentiation (opens in new window)

Author(s): Sapir Herchcovici Levy, Sharon Feldman Cohen, Lee Arnon, Shlomtzion Lahav, Muhammad Awawdy, Adi Alajem, Danny Bavli, Xue Sun, Yosef Buganim, and Oren Ram
Published in: Stem Cell Reports, Issue 22136711, 2022, Page(s) 1334–1350, ISSN 2213-6711
Publisher: Cell Press
DOI: 10.1016/j.stemcr.2022.04.016

CloneSeq - Single-cell clonal 3D culture and analysis protocol (opens in new window)

Author(s): Xue Sun, Danny Bavli, Chen Kozulin, Alex Motzik, Amnon Buxboim, Oren Ram
Published in: STAR Protocols, Issue 26661667, 2021, Page(s) 100794, ISSN 2666-1667
Publisher: Elsvier
DOI: 10.1016/j.xpro.2021.100794

High-throughput total RNA sequencing in single cells using VASA-seq (opens in new window)

Author(s): Fredrik Salmen , Joachim De Jonghe , Tomasz S Kaminski, Anna Alemany, Guillermo E Parada, Joe Verity-Legg, Ayaka Yanagida, Timo N Kohler, Nicholas Battich, Floris van den Brekel, Anna L Ellermann, Alfonso Martinez Arias, Jennifer Nichols, Martin Hemberg, Florian Hollfelder, Alexander van Oudenaarden
Published in: Nature Biotechnology, Issue 10870156, 2022, ISSN 1087-0156
Publisher: Nature Publishing Group
DOI: 10.1038/s41587-022-01361-8

Delineating the heterogeneity of matrix-directed differentiation toward soft and stiff tissue lineages via single-cell profiling (opens in new window)

Author(s): Shlomi Brielle, Danny Bavli, Alex Motzik, Yoav Kan-Tor, Xue Sun, Chen Kozulin, Batia Avni, Oren Ram, and Amnon Buxboim
Published in: PNAS, Issue 00278424, 2021, Page(s) 118 (19) e2016322118, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.2016322118

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