Computationally Active DNA Nanostructures

Project Information

Active-DNA

Grant agreement ID: 772766

DOI

10.3030/772766

Project closed

EC signature date 2 October 2018

Start date 1 November 2018

End date 31 October 2024

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost

€ 2 349 603,00

EU contribution

€ 2 349 603,00

Coordinated by

NATIONAL UNIVERSITY OF IRELAND MAYNOOTH
Ireland

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Open Research Data Pilot (1)

Data Management Plan

Open Research Data Pilot

Publications

Book chapters (4)

The Collatz Process Embeds a Base Conversion Algorithm

Author(s): Tristan Stérin, Damien Woods
Published in: Reachability Problems - 14th International Conference, RP 2020, Paris, France, October 19–21, 2020, Proceedings, Issue 12448, 2020, Page(s) 131-147, ISBN 978-3-030-61738-7
Publisher: Springer International Publishing
DOI: 10.1007/978-3-030-61739-4_9

Hardness of Busy Beaver Value BB(15)

Author(s): Tristan Stérin, Damien Woods
Published in: Lecture Notes in Computer Science, Reachability Problems, Issue 15050, 2024, Page(s) 120-137, ISBN 978-3-031-72620-0
Publisher: Springer Nature Switzerland
DOI: 10.1007/978-3-031-72621-7_9

Binary Expression of Ancestors in the Collatz Graph

Author(s): Tristan Stérin
Published in: Reachability Problems - 14th International Conference, RP 2020, Paris, France, October 19–21, 2020, Proceedings, Issue 12448, 2020, Page(s) 115-130, ISBN 978-3-030-61738-7
Publisher: Springer International Publishing
DOI: 10.1007/978-3-030-61739-4_8

Non-cooperatively Assembling Large Structures

Author(s): Pierre-Étienne Meunier, Damien Regnault
Published in: DNA Computing and Molecular Programming - 25th International Conference, DNA 25, Seattle, WA, USA, August 5–9, 2019, Proceedings, Issue 11648, 2019, Page(s) 120-139, ISBN 978-3-030-26806-0
Publisher: Springer International Publishing
DOI: 10.1007/978-3-030-26807-7_7

Thesis and dissertations (1)

Six Tiles: From Collatz Sequences to Algorithmic DNA Origami

Author(s): Tristan Stérin
Published in: PhD thesis, 2023
Publisher: Maynooth University

Conference proceedings (5)

Turning Machines

Author(s): Irina Kostitsyna, Cai Wood, Damien Woods
Published in: 26th International Conference on DNA Computing and Molecular Programming (DNA 26), Issue 174, 2020, Page(s) 1--21
Publisher: Leibniz International Proceedings in Informatics (LIPIcs)
DOI: 10.4230/lipics.dna.2020.11

Small tile sets that compute while solving mazes

Author(s): Matthew Cook, Tristan Stérin, Damien Woods
Published in: 27th International Conference on DNA Computing and Molecular Programming (DNA27), Issue 205, 2021, Page(s) 8:1--8:20
Publisher: LIPICS
DOI: 10.4230/lipics.dna.27.8

The program-size complexity of self-assembled paths

Author(s): Pierre-Étienne Meunier, Damien Regnault, Damien Woods
Published in: Proceedings of the 52nd Annual ACM SIGACT Symposium on Theory of Computing, Issue Yearly, 2020, Page(s) 727-737, ISBN 9781-450369794
Publisher: ACM
DOI: 10.1145/3357713.3384263

Minimum Free Energy, Partition Function and Kinetics Simulation Algorithms for a Multistranded Scaffolded DNA Computer

Author(s): Ahmed Shalaby, Chris Thachuk, Damien Woods
Published in: 29th International Conference on DNA Computing and Molecular Programming (DNA 29), Issue 276, 2023, Page(s) 1:1--1:22, ISBN 978-3-95977-297-6
Publisher: Leibniz International Proceedings in Informatics (LIPIcs)
DOI: 10.4230/lipics.dna.29.1

scadnano: A Browser-Based, Scriptable Tool for Designing DNA Nanostructures

Author(s): David Doty, Benjamin L Lee, Tristan Stérin
Published in: 26th International Conference on DNA Computing and Molecular Programming (DNA 26), Issue 174, 2020, Page(s) 9:1--9:17, ISBN 978-3-95977-163-4
Publisher: Schloss Dagstuhl--Leibniz-Zentrum für Informatik
DOI: 10.4230/lipics.dna.2020.9

Peer reviewed articles (2)

Pattern recognition in the nucleation kinetics of non-equilibrium self-assembly

Author(s): Constantine Glen Evans, Jackson O’Brien, Erik Winfree, Arvind Murugan
Published in: Nature, Issue 625, 2024, Page(s) 500-507, ISSN 0028-0836
Publisher: Nature Publishing Group
DOI: 10.1038/s41586-023-06890-z

Turning machines: a simple algorithmic model for molecular robotics

Author(s): Irina Kostitsyna, Cai Wood, Damien Woods
Published in: Natural Computing, Issue Open Access published on 22/2/22, 2022, ISSN 1572-9796
Publisher: Springer
DOI: 10.1007/s11047-022-09880-8