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Promoting One Health in Europe through joint actions on foodborne zoonoses, antimicrobial resistance and emerging microbiological hazards.

Deliverables

Summary version of the updated Strategic Research Agenda

Summary version of the updated Strategic Research Agenda

First annual report on dissemination activities to international stakeholders

First annual report on dissemination activities to international stakeholders

Provisional report on the identified research needs of international stakeholders for the integration into the strategic research agenda

Provisional report on the identified research needs of international stakeholders for the integration into the strategic research agenda

Report from thematic meeting I

Report from thematic meeting I

Protocol for Annual Scientific Meeting (ASM) organisation

Protocol for Annual Scientific Meeting (ASM) organisation

Guidelines for WP3/WP4 to monitor projects (at start, periodic and end-term evaluations)

Guidelines for WP3/WP4 to monitor projects (at start, periodic and end-term evaluations)

Report n°1 on one workshop per year associated with ASM (with WP1,3,4 and 5)

Report n°1 on one workshop per year associated with ASM (with WP1,3,4 and 5)

Updated guidelines for Submission and selection of project proposals (JRP&JIP)

Updated guidelines for Submission and selection of project proposals (JRP&JIP)

Guidelines for project coordinators to report (JRP&JIP)

Guidelines for project coordinators to report (JRP&JIP)

Report on the procedure to identify research needs of international stakeholders

Report on the procedure to identify research needs of international stakeholders

Abstract book for 1st Annual Scientific Meeting (ASM)

Abstract book for 1st Annual Scientific Meeting (ASM)

Summary progress report year 2

Summary progress report year 2

Report from 3rd cogwheel workshop

Report from 3rd cogwheel workshop

Second annual report on dissemination activities to international stakeholders

Second annual report on dissemination activities to international stakeholders

Instructions for final reporting of JIPs

Instructions for final reporting of JIPs

Summary progress report year 1

Summary progress report year 1

Report on the stakeholders contact list and the communication procedure established with stakeholder

Report on the stakeholders contact list and the communication procedure established with stakeholder

Report on the recently started projects, 1st call

Report on the recently started projects, 1st call

Report on a capacity map and indicators developed

Report on a capacity map and indicators developed

Guidelines for submission and selection of proposals for STIMs and IMs

Guidelines for submission and selection of proposals for STIMs and IMs

Guidelines for DMP implementation

Guidelines for DMP implementation

1st cogwheel workshop report with COMPARE

1st cogwheel workshop report with COMPARE

Annual report on the internal and external newsletter produced during the first year

Annual report on the internal and external newsletter produced during the first year

Report on the identification of relevant EU projects and initiatives and the procedure to identify potential strategic interactions

Report on the identification of relevant EU projects and initiatives and the procedure to identify potential strategic interactions

Report on the experts meeting

Report on the experts meeting

Annual work plan for the second year

Annual work plan for the second year

Provisional strategic research agenda

Provisional strategic research agenda

Updated list and descriptions of priority research and integrative topics

Updated list and descriptions of priority research and integrative topics

Report of the first One health summer school

Report of the first One health summer school

Report on the dissemination strategy developed

Report on the dissemination strategy developed

1st periodic report on ongoing JRP

1st periodic report on ongoing JRP

Annual work plan for the third year

Annual work plan for the third year

1st periodic report on ongoing JIPs

1st periodic report on ongoing JIPs

Report on potential strategic interactions with EU projects and initiatives

Report on potential strategic interactions with EU projects and initiatives

Report from 2nd cogwheel workshop

Report from 2nd cogwheel workshop

Data management plan

Data management plan

Guidelines for WP3/WP4 on the evaluation of final reports

Guidelines for WP3/WP4 on the evaluation of final reports

Report on the procedure for updating of priority topics

Report on the procedure for updating of priority topics

Updated guidelines for Evaluation of proposal + Selection of projects (JRP&JIP)

Updated guidelines for Evaluation of proposal + Selection of projects (JRP&JIP)

Complete version of annual report for stakeholders n°1

Complete version of annual report for stakeholders

Report from supportive start-up meeting, 1st round

Report from supportive start-up meeting, 1st round

Instructions for monitoring of and reporting on JIPs, excl final reporting

Instructions for monitoring of and reporting on JIPs, excl final reporting

Open data access point on the website

Open data access point on the website

Website, social media accounts and templates

Website and social media accounts and power-point template

Searching for OpenAIRE data...

Publications

Evaluation of a commercial exogenous internal process control for diagnostic RNA virus metagenomics from different animal clinical samples

Author(s): Steven Van Borm, Qiang Fu, Raf Winand, Kevin Vanneste, Mikhayil Hakhverdyan, Dirk Höper, Frank Vandenbussche
Published in: Journal of Virological Methods, Issue 283, 2020, Page(s) 113916, ISSN 0166-0934
DOI: 10.1016/j.jviromet.2020.113916

Broad-Spectrum Cephalosporin-Resistant Klebsiella spp. Isolated from Diseased Horses in Austria

Author(s): Igor Loncaric, Adriana Cabal Rosel, Michael P. Szostak, Theresia Licka, Franz Allerberger, Werner Ruppitsch, Joachim Spergser
Published in: Animals, Issue 10/2, 2020, Page(s) 332, ISSN 2076-2615
DOI: 10.3390/ani10020332

Foodborne Campylobacter : A multi-center proposal for a fast screening tool in biosecured chicken flocks

Author(s): Jeffrey Hoorfar, Ivana Koláčková, Gro S. Johannessen, Giuliano Garofolo, Francesca Marotta, Kinga Wieczorek, Jacek Osek, Mona Torp, Bjørn Spilsberg, Camilla Sekse, Natasia Rebekka Thornval, Renáta Karpíšková
Published in: Applied and Environmental Microbiology, 2020, ISSN 0099-2240
DOI: 10.1128/aem.01051-20

Analysis of COMPASS, a New Comprehensive Plasmid Database Revealed Prevalence of Multireplicon and Extensive Diversity of IncF Plasmids

Author(s): Pierre-Emmanuel Douarre, Ludovic Mallet, Nicolas Radomski, Arnaud Felten, Michel-Yves Mistou
Published in: Frontiers in Microbiology, Issue 11, 2020, ISSN 1664-302X
DOI: 10.3389/fmicb.2020.00483

An alternative workflow for molecular detection of SARS-CoV-2 – escape from the NA extraction kit-shortage, Copenhagen, Denmark, March 2020

Author(s): Anna S. Fomsgaard, Maiken Worsøe Rosenstierne
Published in: Eurosurveillance, Issue 25/14, 2020, ISSN 1560-7917
DOI: 10.2807/1560-7917.es.2020.25.14.2000398

Identification of Klebsiella pneumoniae, Klebsiella quasipneumoniae, Klebsiella variicola and Related Phylogroups by MALDI-TOF Mass Spectrometry

Author(s): Carla Rodrigues, Virginie Passet, Andriniaina Rakotondrasoa, Sylvain Brisse
Published in: Frontiers in Microbiology, Issue 9, 2018, ISSN 1664-302X
DOI: 10.3389/fmicb.2018.03000

Analysis of consumer food purchase data used for outbreak investigations, a review

Author(s): Frederik T Møller, Kåre Mølbak, Steen Ethelberg
Published in: Eurosurveillance, Issue 23/24, 2018, ISSN 1560-7917
DOI: 10.2807/1560-7917.es.2018.23.24.1700503

Population Genetic Structure of Listeria monocytogenes Strains Isolated From the Pig and Pork Production Chain in France

Author(s): Benjamin Félix, Carole Feurer, Aurelien Maillet, Laurent Guillier, Evelyne Boscher, Annaëlle Kerouanton, Martine Denis, Sophie Roussel
Published in: Frontiers in Microbiology, Issue 9, 2018, ISSN 1664-302X
DOI: 10.3389/fmicb.2018.00684

Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov.

Author(s): Carla Rodrigues, Virginie Passet, Andriniaina Rakotondrasoa, Thierno Abdoulaye Diallo, Alexis Criscuolo, Sylvain Brisse
Published in: Research in Microbiology, Issue 170/3, 2019, Page(s) 165-170, ISSN 0923-2508
DOI: 10.1016/j.resmic.2019.02.003

Field samplings of Ixodes ricinus ticks from a tick-borne encephalitis virus micro-focus in Northern Zealand, Denmark

Author(s): Andreas Petersen, Maiken Worsøe Rosenstierne, Morten Rasmussen, Kurt Fuursted, Henrik Vedel Nielsen, Lee O’Brien Andersen, René Bødker, Anders Fomsgaard
Published in: Ticks and Tick-borne Diseases, Issue 10/5, 2019, Page(s) 1028-1032, ISSN 1877-959X
DOI: 10.1016/j.ttbdis.2019.05.005

Outbreak of Yersiniabactin-producing Klebsiella pneumoniae in a Neonatal Intensive Care Unit

Author(s): Lukas Wisgrill, Sarah Lepuschitz, Marion Blaschitz, Judith Rittenschober-Böhm, Magda Diab-El Schahawi, Sören Schubert, Alexander Indra, Angelika Berger
Published in: The Pediatric Infectious Disease Journal, Issue 38/6, 2019, Page(s) 638-642, ISSN 0891-3668
DOI: 10.1097/inf.0000000000002258

Effects on Intestinal Mucosal Morphology, Productive Parameters and Microbiota Composition after Supplementation with Fermented Defatted Alperujo (FDA) in Laying Hens

Author(s): Agustín Rebollada-Merino, Carmen Bárcena, María Ugarte-Ruiz, Néstor Porras, Francisco J. Mayoral-Alegre, Irene Tomé-Sánchez, Lucas Domínguez, Antonio Rodríguez-Bertos
Published in: Antibiotics, Issue 8/4, 2019, Page(s) 215, ISSN 2079-6382
DOI: 10.3390/antibiotics8040215

Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov.

Author(s): Cristina Merla, Carla Rodrigues, Virginie Passet, Marta Corbella, Harry A. Thorpe, Teemu V. S. Kallonen, Zhiyong Zong, Piero Marone, Claudio Bandi, Davide Sassera, Jukka Corander, Edward J. Feil, Sylvain Brisse
Published in: Frontiers in Microbiology, Issue 10, 2019, ISSN 1664-302X
DOI: 10.3389/fmicb.2019.02360

The ZKIR Assay, a Real-Time PCR Method for the Detection of Klebsiella pneumoniae and Closely Related Species in Environmental Samples

Author(s): Elodie Barbier, Carla Rodrigues, Geraldine Depret, Virginie Passet, Laurent Gal, Pascal Piveteau, Sylvain Brisse
Published in: Applied and Environmental Microbiology, Issue 86/7, 2020, ISSN 0099-2240
DOI: 10.1128/AEM.02711-19

Attributable sources of community-acquired carriage of Escherichia coli containing β-lactam antibiotic resistance genes: a population-based modelling study

Author(s): Lapo Mughini-Gras, Alejandro Dorado-García, Engeline van Duijkeren, Gerrita van den Bunt, Cindy M Dierikx, Marc J M Bonten, Martin C J Bootsma, Heike Schmitt, Tine Hald, Eric G Evers, Aline de Koeijer, Wilfrid van Pelt, Eelco Franz, Dik J Mevius, Dick J J Heederik
Published in: The Lancet Planetary Health, Issue 3/8, 2019, Page(s) e357-e369, ISSN 2542-5196
DOI: 10.1016/s2542-5196(19)30130-5

The shufflon of IncI1 plasmids is rearranged constantly during different growth conditions

Author(s): Michael S.M. Brouwer, Stephanie D. Jurburg, Frank Harders, Arie Kant, Dik J. Mevius, Adam P. Roberts, Alex Bossers
Published in: Plasmid, Issue 102, 2019, Page(s) 51-55, ISSN 0147-619X
DOI: 10.1016/j.plasmid.2019.03.003

Stepwise evolution and convergent recombination underlie the global dissemination of carbapenemase-producing Escherichia coli

Author(s): Rafael Patiño-Navarrete, Isabelle Rosinski-Chupin, Nicolas Cabanel, Lauraine Gauthier, Julie Takissian, Jean-Yves Madec, Monzer Hamze, Remy A. Bonnin, Thierry Naas, Philippe Glaser
Published in: Genome Medicine, Issue 12/1, 2020, ISSN 1756-994X
DOI: 10.1186/s13073-019-0699-6

Salmonella Surveillance Systems in Swine and Humans in Spain: A Review

Author(s): Marta Martínez-Avilés, Macarena Garrido-Estepa, Julio Álvarez, Ana de la Torre
Published in: Veterinary Sciences, Issue 6/1, 2019, Page(s) 20, ISSN 2306-7381
DOI: 10.3390/vetsci6010020

Toxoplasma gondii infection and toxoplasmosis in farm animals: Risk factors and economic impact

Author(s): S. Stelzer, W. Basso, J. Benavides Silván, L.M. Ortega-Mora, P. Maksimov, J. Gethmann, F.J. Conraths, G. Schares
Published in: Food and Waterborne Parasitology, Issue 15, 2019, Page(s) e00037, ISSN 2405-6766
DOI: 10.1016/j.fawpar.2019.e00037

Campylobacter in chicken – Critical parameters for international, multicentre evaluation of air sampling and detection methods

Author(s): Gro S. Johannessen, Giuliano Garofolo, Gabriella Di Serafino, Ivana Koláčková, Renáta Karpíšková, Kinga Wieczorek, Jacek Osek, Julia Christensen, Mona Torp, Jeffrey Hoorfar
Published in: Food Microbiology, Issue 90, 2020, Page(s) 103455, ISSN 0740-0020
DOI: 10.1016/j.fm.2020.103455

MLST-based genetic relatedness of Campylobacter jejuni isolated from chickens and humans in Poland

Author(s): Kinga Wieczorek, Tomasz Wołkowicz, Jacek Osek
Published in: PLOS ONE, Issue 15/1, 2020, Page(s) e0226238, ISSN 1932-6203
DOI: 10.1371/journal.pone.0226238

Microsatellite Investigations of Multiple Echinococcus Granulosus Sensu Stricto Cysts in Single Hosts Reveal Different Patterns of Infection Events between Livestock and Humans

Author(s): Selim M’rad, Myriam Oudni-M’rad, Vanessa Bastid, Laure Bournez, Sana Mosbahi, Abdelallatif Nouri, Hamouda Babba, Frédéric Grenouillet, Franck Boué, Gérald Umhang
Published in: Pathogens, Issue 9/6, 2020, Page(s) 444, ISSN 2076-0817
DOI: 10.3390/pathogens9060444

Dietary supplementation with fermented defatted “alperujo” induces modifications of the intestinal mucosa and cecal microbiota of broiler chickens

Author(s): Agustín Rebollada-Merino, María Ugarte-Ruiz, Marta Hernández, Pedro Miguela-Villoldo, David Abad, Pedro Cuesta-Álvaro, David Rodríguez-Lázaro, Lucía de Juan, Lucas Domínguez, Antonio Rodríguez-Bertos
Published in: Poultry Science, 2020, ISSN 0032-5791
DOI: 10.1016/j.psj.2020.07.015

Klebsiella pneumoniae carriage in low-income countries: antimicrobial resistance, genomic diversity and risk factors

Author(s): Bich-Tram Huynh, Virginie Passet, Andriniaina Rakotondrasoa, Thierno Diallo, Alexandra Kerleguer, Melanie Hennart, Agathe De Lauzanne, Perlinot Herindrainy, Abdoulaye Seck, Raymond Bercion, Laurence Borand, Maria Pardos de la Gandara, Elisabeth Delarocque-Astagneau, Didier Guillemot, Muriel Vray, Benoit Garin, Jean-Marc Collard, Carla Rodrigues, Sylvain Brisse
Published in: Gut Microbes, Issue 11/5, 2020, Page(s) 1287-1299, ISSN 1949-0976
DOI: 10.1080/19490976.2020.1748257

<p>Monitoring Antimicrobial Resistance and Drug Usage in the Human and Livestock Sector and Foodborne Antimicrobial Resistance in Six European Countries</p>

Author(s): Octavio Mesa Varona, Katerina Chaintarli, Berit Muller-Pebody, Muna F Anjum, Tim Eckmanns, Madelaine Norström, Ides Boone, Bernd-Alois Tenhagen
Published in: Infection and Drug Resistance, Issue Volume 13, 2020, Page(s) 957-993, ISSN 1178-6973
DOI: 10.2147/idr.s237038

Climatic and topographic tolerance limits of wild boar in Eurasia: implications for their expansion

Author(s): Jaime Bosch, Irene Iglesias, Marta Martínez, Ana De la Torre
Published in: GEOGRAPHY, ENVIRONMENT, SUSTAINABILITY, Issue 13/1, 2020, Page(s) 107-114, ISSN 2542-1565
DOI: 10.24057/2071-9388-2019-52

Extensive antimicrobial resistance mobilization via multicopy plasmid encapsidation mediated by temperate phages

Author(s): Lorena Rodríguez-Rubio, Carlos Serna, Manuel Ares-Arroyo, Bosco R Matamoros, Jose F Delgado-Blas, Natalia Montero, Cristina Bernabe-Balas, Emilia F Wedel, Irene S Mendez, Maite Muniesa, Bruno Gonzalez-Zorn
Published in: Journal of Antimicrobial Chemotherapy, 2020, ISSN 0305-7453
DOI: 10.1093/jac/dkaa311

Gut microbiota composition before infection determines the Salmonella super‐ and low‐shedder phenotypes in chicken

Author(s): Florent Kempf, Pierrette Menanteau, Ivan Rychlik, Tereza Kubasová, Jérôme Trotereau, Isabelle Virlogeux‐Payant, Samantha Schaeffer, Catherine Schouler, Rosanna Drumo, Edouard Guitton, Philippe Velge
Published in: Microbial Biotechnology, Issue 13/5, 2020, Page(s) 1611-1630, ISSN 1751-7915
DOI: 10.1111/1751-7915.13621

Spatial Trends in Salmonella Infection in Pigs in Spain

Author(s): Kendy Tzu-yun Teng, Marta Martinez Avilés, Maria Ugarte-Ruiz, Carmen Barcena, Ana de la Torre, Gema Lopez, Miguel A. Moreno, Lucas Dominguez, Julio Alvarez
Published in: Frontiers in Veterinary Science, Issue 7, 2020, ISSN 2297-1769
DOI: 10.3389/fvets.2020.00345

Identifying emerging trends in antimicrobial resistance using Salmonella surveillance data in poultry in Spain

Author(s): Julio Alvarez, Gema Lopez, Petra Muellner, Cristina Frutos, Christina Ahlstrom, Tania Serrano, Miguel A. Moreno, Manuel Duran, Jose Luis Saez, Lucas Dominguez, Maria Ugarte‐Ruiz
Published in: Transboundary and Emerging Diseases, Issue 67/1, 2019, Page(s) 250-262, ISSN 1865-1674
DOI: 10.1111/tbed.13346