Promoting One Health in Europe through joint actions on foodborne zoonoses, antimicrobial resistance and emerging microbiological hazards.

Deliverables

Report n°2 of the annual short term missions completed also uploaded onto the EJP webpage.

Provisional report on the identified research needs of international stakeholders for the integration into the strategic research agenda

Report of the third One health summer school

Report from thematic meeting I

Protocol for Annual Scientific Meeting (ASM) organisation

Report of the second One health summer school

Report from 4th cogwheel workshop

Report from thematic meeting III

Guidelines for WP3/WP4 to monitor projects (at start, periodic and end-term evaluations)

Report n°1 on one workshop per year associated with ASM (with WP1,3,4 and 5)

Updated guidelines for Submission and selection of project proposals (JRP&JIP)

Report from supportive start-up meeting, 2nd round

4th Periodic Report on PhDs

Annual report on the internal and external newsletter produced during the third year

Guidelines for project coordinators to report (JRP&JIP)

2nd periodic report on JIPs

Report on the procedure to identify research needs of international stakeholders

Complete version of annual report for stakeholders n°3

Complete version of annual report for stakeholders

Abstract book for 1st Annual Scientific Meeting (ASM)

Fourth annual report on dissemination activities to international stakeholders

Summary progress report year 2

Report from 3rd cogwheel workshop

Report from 6th cogwheel workshop

Second annual report on dissemination activities to international stakeholders

Annual work plan for the fifth year

One Health SRIA 2021- 2030.

One Health SRIA 2021- 2030 - Preliminary Outline

Instructions for final reporting of JIPs

Summary progress report year 1

Report on the stakeholders contact list and the communication procedure established with stakeholder

Report on the recently started projects, 1st call

Report on a capacity map and indicators developed

Abstract book for 2nd Annual Scientific Meeting (ASM)

Complete version of annual report for stakeholders n°2

Complete version of annual report for stakeholders

Third annual report on dissemination activities to international stakeholders

Summary progress report year 4

Guidelines for submission and selection of proposals for STIMs and IMs

3rd Periodic Reports on PhDs

4th periodic report on JRP

Guidelines for DMP implementation

Report from 5th cogwheel workshop

1st cogwheel workshop report with COMPARE

Abstract book for 3rd Annual Scientific Meeting (ASM)

Guidelines for evaluation of final reports

Annual report on the internal and external newsletter produced during the first year

Report on the identification of relevant EU projects and initiatives and the procedure to identify potential strategic interactions

Report on scientific developments

2nd periodic report on JRP

Report on the experts meeting

Annual work plan for the second year

Report from 8th cogwheel workshop

Report on the recently started projects, 2nd call

Report on communications workshop and media training

Provisional strategic research agenda

Report n°3 on one workshop per year associated with ASM (with WP1,3,4 and 5)

Report n3 on one workshop per year associated with ASM with WP134 and 5

Updated list and descriptions of priority research and integrative topics

Report of the first One health summer school

Report on the dissemination strategy developed

1st periodic report on ongoing JRP

Summary progress report year 3

Annual work plan for the fourth year

Annual work plan for the third year

1st periodic report on ongoing JIPs

Report on potential strategic interactions with EU projects and initiatives

Report from 2nd cogwheel workshop

Data management plan

Guidelines for WP3/WP4 on the evaluation of final reports

Report from 7th cogwheel workshop

Report on the procedure for updating of priority topics

Report from thematic meeting II

Final reports of 1st call JRPs and evaluation reports

4th periodic report on JIPs

Report n°2 of the annual short term missions completed also uploaded onto the EJP webpage.

Report n°3 of the annual short term missions completed also uploaded onto the EJP webpage.

Report of the first CPD module in one health

Report n°2 on one workshop per year associated with ASM (with WP1,3,4 and 5)

Report n2 on one workshop per year associated with ASM with WP134 and 5

Annual report on the internal and external newsletter produced during the second year

Report of the second CPD module in one health

Updated guidelines for Evaluation of proposal + Selection of projects (JRP&JIP)

Complete version of annual report for stakeholders n°1

Complete version of annual report for stakeholders

Report from supportive start-up meeting, 1st round

Report on Links between COVID-19 related needs of stakeholders and One Health EJP activities

Report on “Links between COVID-19 related needs of stakeholders and One Health EJP activities”

Instructions for monitoring of and reporting on JIPs, excl final reporting

Open data access point on the website

Website, social media accounts and templates

Website and social media accounts and power-point template

Searching for OpenAIRE data...

Publications

Draft Genome Sequence of a Multidrug-Resistant Escherichia coli Sequence Type 1193 Pandemic Clone Isolated from Wastewater in Austria

Author(s): Adriana Cabal, Nadine Peischl, Gerhard Rab, Anna Stöger, Burkhard Springer, Jasmin Sucher, Franz Allerberger, Werner Ruppitsch
Published in: Genome sequences, 2021, ISSN 2165-0497
Publisher: ASM Journals
DOI: 10.1128/mra.00762-21

Point-of-Need DNA Testing for Detection of Foodborne Pathogenic Bacteria

Author(s): Jasmina Vidic, Priya Vizzini, Marisa Manzano, Devon Kavanaugh, Nalini Ramarao, Milica Zivkovic, Vasa Radonic, Nikola Knezevic, Ioanna Giouroudi, Ivana Gadjanski
Published in: Sensors, 19/5, 2019, Page(s) 1100, ISSN 1424-8220
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/s19051100

Large-Scale Genomic Analyses and Toxinotyping of Clostridium perfringens Implicated in Foodborne Outbreaks in France

Author(s): Abakabir Mahamat Abdelrahim, Nicolas Radomski, Sabine Delannoy, Sofia Djellal, Marylène Le Négrate, Katia Hadjab, Patrick Fach, Jacques-Antoine Hennekinne, Michel-Yves Mistou, Olivier Firmesse
Published in: Frontiers in Microbiology, 10, 2019, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2019.00777

Fluorescent bead-based serological detection of Toxoplasma gondii infection in chickens

Author(s): Benedikt T. Fabian, Fatima Hedar, Martin Koethe, Berit Bangoura, Pavlo Maksimov, Franz J. Conraths, Isabelle Villena, Dominique Aubert, Frank Seeber, Gereon Schares
Published in: Parasites & Vectors, 13/1, 2020, ISSN 1756-3305
Publisher: BioMed Central
DOI: 10.1186/s13071-020-04244-6

Genomic evolution of the globally disseminated multidrug-resistant Klebsiella pneumoniae clonal group 147

Author(s): Carla Rodrigues, Siddhi Desai, Virginie Passet, Devarshi Gajjar, and Sylvain Brisse
Published in: Microbial Genomics, 2022, ISSN 2057-5858
Publisher: London: Society for General Microbiology, 2015-
DOI: 10.1099/mgen.0.000737

Multi-Approach Investigation Regarding the West Nile Virus Situation in Hungary, 2018

Author(s): Brigitta Zana, Károly Erdélyi, Anna Nagy, Eszter Mezei, Orsolya Nagy, Mária Takács, Tamás Bakonyi, Petra Forgách, Orsolya Korbacska-Kutasi, Orsolya Fehér, Péter Malik, Krisztina Ursu, Péter Kertész, Anett Kepner, Máté Martina, Tamás Süli, Zsófia Lanszki, Gábor Endre Tóth, Anett Kuczmog, Balázs Somogyi, Ferenc Jakab, Gábor Kemenesi
Published in: Viruses, 12/1, 2020, Page(s) 123, ISSN 1999-4915
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v12010123

Co-occurrence of the bla VIM-1 and bla SHV-12 genes on an IncHI2 plasmid of an Escherichia coli isolate recovered from German livestock

Author(s): N Pauly, J A Hammerl, S Schwarz, M Grobbel, D Meemken, B Malorny, B -A Tenhagen, A Käsbohrer, A Irrgang
Published in: Journal of Antimicrobial Chemotherapy, 76/2, 2020, Page(s) 531-533, ISSN 0305-7453
Publisher: Oxford University Press
DOI: 10.1093/jac/dkaa436

Colistin-Resistant Enterobacteriaceae Isolated From Process Waters and Wastewater From German Poultry and Pig Slaughterhouses

Author(s): Mykhailo Savin, Gabriele Bierbaum, Khald Blau, Marijo Parcina, Esther Sib, Kornelia Smalla, Ricarda Schmithausen, Céline Heinemann, Jens A. Hammerl, Judith Kreyenschmidt
Published in: Frontiers in Microbiology, 11, 2020, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2020.575391

Phenotypic and Genotypic Properties of Fluoroquinolone-Resistant, qnr-Carrying Escherichia coli Isolated from the German Food Chain in 2017

Author(s): Katharina Juraschek, Carlus Deneke, Silvia Schmoger, Mirjam Grobbel, Burkhard Malorny, Annemarie Käsbohrer, Stefan Schwarz, Diana Meemken, Jens Andre Hammerl
Published in: Microorganisms, 9/6, 2021, Page(s) 1308, ISSN 2076-2607
Publisher: Microorganisms
DOI: 10.3390/microorganisms9061308

Comparison of Two DNA Extraction Methods and Two PCRs for Detection of Echinococcus multilocularis in the Stool Samples of Naturally Infected Red Foxes

Author(s): Katarzyna Skrzypek, Jacek Karamon, Małgorzata Samorek-Pieróg, Joanna Dąbrowska, Maciej Kochanowski, Jacek Sroka, Ewa Bilska-Zając, Tomasz Cencek
Published in: Animals, 10/12, 2020, Page(s) 2381, ISSN 2076-2615
Publisher: Animals
DOI: 10.3390/ani10122381

Molecular Characterization of Giardia duodenalis in Children and Adults Sampled in Algeria

Author(s): Salem Belkessa, Daniel Thomas-Lopez, Karim Houali, Farida Ghalmi and Christen Rune Stensvold
Published in: Microorganisms, 2020, ISSN 2076-2607
Publisher: Microorganisms
DOI: 10.3390/microorganisms9010054

Phenotypical antimicrobial resistance data of clinical and non-clinical Escherichia coli from poultry in Germany between 2014 and 2017

Author(s): Octavio Mesa-Varona, Heike Kaspar, Mirjam Grobbel, Bernd-Alois Tenhagen
Published in: PLOS ONE, 15/12, 2020, Page(s) e0243772, ISSN 1932-6203
Publisher: Public Library of Science
DOI: 10.1371/journal.pone.0243772

Zoonotic pathogens in wild muskoxen ( Ovibos moschatus ) and domestic sheep ( Ovis aries ) from Greenland

Author(s): Rebecca P. K. D. Berg, C. Rune Stensvold, Pikka Jokelainen, Anna K. Grønlund, Henrik V. Nielsen, Susan Kutz, Christian M.O. Kapel
Published in: Veterinary Medicine and Science, 2021, ISSN 2053-1095
Publisher: Veterinary Medicine and Science
DOI: 10.1002/vms3.599

An outbreak of monophasic Salmonella Typhimurium associated with raw pork sausage and other pork products, Denmark 2018–19

Author(s): I. G. Helmuth, L. Espenhain, S. Ethelberg, T. Jensen, J. Kjeldgaard, E. Litrup, S. Schjørring, L. Müller
Published in: Epidemiology and Infection, 147, 2019, ISSN 0950-2688
Publisher: Cambridge University Press
DOI: 10.1017/s0950268819002073

Population genomics and antimicrobial resistance in Corynebacterium diphtheriae

Author(s): Melanie Hennart, Leonardo G. Panunzi, Carla Rodrigues, Quentin Gaday, Sarah L. Baines, Marina Barros-Pinkelnig, Annick Carmi-Leroy, Melody Dazas, Anne Marie Wehenkel, Xavier Didelot, Julie Toubiana, Edgar Badell, Sylvain Brisse
Published in: Genome Medicine, 12/1, 2020, ISSN 1756-994X
Publisher: BioMed Central
DOI: 10.1186/s13073-020-00805-7

The Retrospective on Atypical Brucella Species Leads to Novel Definitions

Author(s): Occhialini, A.; Hofreuter, D.; Ufermann, C.-M.; Al Dahouk, S.; Köhler, S.
Published in: Microorganisms, 2022, ISSN 2076-2607
Publisher: Basel: MDPI AG, 2013-
DOI: 10.3390/microorganisms10040813

Assessment of the Transmission Dynamics of Clostridioides Difficile in a Farm Environment Reveals the Presence of a New Toxigenic Strain Connected to Swine Production.

Author(s): Alves, F.; Nunes, A.; Castro, R.; Sequeira, A.; Moreira, O.; Matias, R.; Rodrigues, J. C.; Silveira, L.; Gomes, J. P.; Oleastro, M.
Published in: Frontiers in microbiology, 2022, ISSN 2332-8266
Publisher: Frontiers in microbiology
DOI: 10.3389/fmicb.2022.858310

Clinically Relevant Escherichia coli Isolates from Process Waters and Wastewater of Poultry and Pig Slaughterhouses in Germany

Author(s): Mykhailo Savin, Gabriele Bierbaum, Judith Kreyenschmidt, Ricarda Schmithausen, Esther Sib, Silvia Schmoger, Annemarie Käsbohrer, Jens Hammerl
Published in: Microorganisms, 9/4, 2021, Page(s) 698, ISSN 2076-2607
Publisher: Microorganisms
DOI: 10.3390/microorganisms9040698

Identification of a blaVIM-1-Carrying IncA/C2 Multiresistance Plasmid in an Escherichia coli Isolate Recovered from the German Food Chain

Author(s): Natalie Pauly, Jens Andre Hammerl, Mirjam Grobbel, Annemarie Käsbohrer, Bernd-Alois Tenhagen, Burkhard Malorny, Stefan Schwarz, Diana Meemken, Alexandra Irrgang
Published in: Microorganisms, 2021, ISSN 2076-2607
Publisher: Microorganisms
DOI: 10.3390/microorganisms9010029

Using stochastic dynamic modelling to estimate the sensitivity of current and alternative surveillance program of Salmonella in conventional broiler production

Author(s): Ofosuhene O Apenteng,Mark E Arnold, Håkan Vigre
Published in: Nature, 2020, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-020-76514-3

Outcome of Different Sequencing and Assembly Approaches on the Detection of Plasmids and Localization of Antimicrobial Resistance Genes in Commensal Escherichia coli

Author(s): Katharina Juraschek, Maria Borowiak, Simon H. Tausch, Burkhard Malorny, Annemarie Käsbohrer, Saria Otani, Stefan Schwarz, Diana Meemken, Carlus Deneke, Jens Andre Hammerl
Published in: Microorganisms, 9/3, 2021, Page(s) 598, ISSN 2076-2607
Publisher: Microorganisms
DOI: 10.3390/microorganisms9030598

Isolation and genetic characterization of Toxoplasma gondii in Spanish sheep flocks

Author(s): Mercedes Fernández-Escobar, Rafael Calero-Bernal, Julio Benavides, Javier Regidor-Cerrillo, María Cristina Guerrero-Molina, Daniel Gutiérrez-Expósito, Esther Collantes-Fernández, Luis Miguel Ortega-Mora
Published in: Parasites & Vectors, 13/1, 2020, ISSN 1756-3305
Publisher: BioMed Central
DOI: 10.1186/s13071-020-04275-z

Evaluation of a commercial exogenous internal process control for diagnostic RNA virus metagenomics from different animal clinical samples

Author(s): Steven Van Borm, Qiang Fu, Raf Winand, Kevin Vanneste, Mikhayil Hakhverdyan, Dirk Höper, Frank Vandenbussche
Published in: Journal of Virological Methods, 283, 2020, Page(s) 113916, ISSN 0166-0934
Publisher: Elsevier BV
DOI: 10.1016/j.jviromet.2020.113916

Isolation, Genotyping, and Mouse Virulence Characterization of Toxoplasma gondii From Free Ranging Iberian Pigs

Author(s): Mercedes Fernández-Escobar, Rafael Calero-Bernal, Javier Regidor-Cerrillo, Raquel Vallejo, Julio Benavides, Esther Collantes-Fernández and Luis Miguel Ortega-Mora
Published in: Frontiers in Veterinary Sciences, 2020, ISSN 2297-1769
Publisher: Lausanne Frontiers Media
DOI: 10.3389/fvets.2020.604782

Multicentre evaluation of a selective isolation protocol for detection of mcr-positive E. coli and Salmonella spp. in food-producing animals and meat

Author(s): Perrin-Guyomard, Agnès; Granier, Sophie; Slettemeås, Jannice Schau; Anjum, Muna; Randall, Luke; AbuOun, Manal; Pauly, Natalie; Irrgang, Alexandra; Hammerl, Jens Andre; Kjeldgaard, Jette Sejer; Hammerum, Anette; Franco, Alessia; Skarżyńska, Magdalena; Kamińska, Ewelina; Wasyl, Dariusz; Dierikx, Cindy; Börjesson, Stefan; Geurts, Yvon; Haenni, Marisa; Veldman, Kees
Published in: SFAM, 2022, ISSN 1365-2672
Publisher: Journal of Applied Microbiology
DOI: 10.1111/lam.13717

Broad-Spectrum Cephalosporin-Resistant Klebsiella spp. Isolated from Diseased Horses in Austria

Author(s): Igor Loncaric, Adriana Cabal Rosel, Michael P. Szostak, Theresia Licka, Franz Allerberger, Werner Ruppitsch, Joachim Spergser
Published in: Animals, 10/2, 2020, Page(s) 332, ISSN 2076-2615
Publisher: Animals
DOI: 10.3390/ani10020332

Risk-based control of Campylobacter spp. in broiler farms and slaughtered flocks to mitigate risk of human campylobacteriosis – A One Health approach

Author(s): Alessandro Foddai, Maarten Nauta, Johanne Ellis-Iversen
Published in: Microbial Risk Analysis, Available online 8 November 2021, 100190, 2021, ISSN 2352-3522
Publisher: Elsevier
DOI: 10.1016/j.mran.2021.100190

Experimental infection with Toxoplasma gondii in broiler chickens (Gallus domesticus): seroconversion, tissue cyst distribution, and prophylaxis

Author(s): Maria E. Nedişan, Adriana Györke, Cristina L. Ştefănuţ, Zsuzsa Kalmár, Zsuzsa Friss, Radu Blaga, Amandine Blaizot, Andra Toma-Naic, Viorica Mircean, Gereon Schares, Olgica Djurković-Djaković, Ivana Klun, Isabelle Villena, Vasile Cozma
Published in: Parasitology Research, 120/2, 2021, Page(s) 593-603, ISSN 0932-0113
Publisher: Springer Verlag
DOI: 10.1007/s00436-020-06984-x

Foodborne Campylobacter : A multi-center proposal for a fast screening tool in biosecured chicken flocks

Author(s): Jeffrey Hoorfar, Ivana Koláčková, Gro S. Johannessen, Giuliano Garofolo, Francesca Marotta, Kinga Wieczorek, Jacek Osek, Mona Torp, Bjørn Spilsberg, Camilla Sekse, Natasia Rebekka Thornval, Renáta Karpíšková
Published in: Applied and Environmental Microbiology, 2020, ISSN 0099-2240
Publisher: American Society for Microbiology
DOI: 10.1128/aem.01051-20

Identification of Echinococcus granulosus Genotypes G1 and G3 by SNPs Genotyping Assays

Author(s): Piero Bonelli, Silvia Dei Giudici, Angela Peruzzu, Lorena Mura, Cinzia Santucciu, Caterina Maestrale, Giovanna Masala
Published in: Pathogens, 10/2, 2021, Page(s) 125, ISSN 2076-0817
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pathogens10020125

High Prevalence of Klebsiella Pneumoniae in European Food Products: A Multicentric Study Comparing Culture and Molecular Detection Methods

Author(s): Rodrigues, Carla; Hauser, Kathrin; Cahill, Niamh; Ligowska-Marzęta, Małgorzata; Centorotola, Gabriella; Cornacchia, Alessandra; Garcia Fierro, Raquel; Haenni, Marisa; Moller Nielsen, Eva; Piveteau, Pascal; Barbier, Elodie; Morris, Dearbhaile; Pomilio, Francesco; Brisse, Sylvain
Published in: Microbiology spectrum, 2022, ISSN 2165-0497
Publisher: ASM
DOI: 10.1128/spectrum.02376-21

Genomic Characterization of Multidrug-Resistant Salmonella Serovar Kentucky ST198 Isolated in Poultry Flocks in Spain (2011–2017).

Author(s): Samper-Cativiela, C.; Diéguez-Roda, B.; Trigo da Roza, F.; Ugarte-Ruiz, M.; Elnekave, E.; Lim, S.; Hernández, M.; Abad, D.; Collado, S.; Sáez, J. L.; de Frutos, C.; Agüero, M.; Moreno, M. Á.; Escudero, J. A.; Álvarez, J. Microbial Genomics 2022, 8 (3).
Published in: Microbial genomics, 2022, ISSN 2057-5858
Publisher: London: Society for General Microbiology, 2015-
DOI: 10.1099/mgen.0.000773

Long-term persistence of neutralizing SARS-CoV-2 antibodies in pets. Transboundary and emerging diseases,

Author(s): Decaro, N., Grassi, A., Lorusso, E., Patterson, E. I., Lorusso, A., Desario, C., Anderson, E. R., Vasinioti, V., Wastika, C. E., Hughes, G. L., Valleriani, F., Colitti, B., Ricci, D., Buonavoglia, D., Rosati, S., Cavaliere, N., Paltrinieri, S., Lauzi, S., Elia, G., & Buonavoglia, C. (2021).
Published in: Long-term persistence of neutralizing SARS-CoV-2 antibodies in pets., 2021, ISSN 1865-1674
Publisher: Blackwell-Wiss.-Verl
DOI: 10.1111/tbed.14308

Contamination of Soil, Water, Fresh Produce, and Bivalve Mollusks with Toxoplasma gondii Oocysts: A Systematic Review

Author(s): Nadia María López Ureña,Umer Chaudhry,Rafael Calero Bernal,Santiago Cano Alsua,Davide Messina Francisco Evangelista, Martha Betson ,Marco Lalle,Pikka Jokelainen,Luis Miguel Ortega Mora andGema Álvarez García
Published in: Microorganisms, 2022, ISSN 2076-2607
Publisher: Basel: MDPI AG, 2013
DOI: 10.3390/microorganisms10030517

A European multicenter evaluation study to investigate the performance on commercially available selective agar plates for the detection of carbapenemase producing Enterobacteriaceae

Author(s): Cindy Dierikxa, , , Marisa Haennie, Hege H. Divon, Hanna KarinIlag,, Annette Hammerum, Jette Sejer Kjeldgaard , Natalie Paulyi, Luke Randall, Muna F.Anjumj, KeesVeldman, Jannice SchauSlettemeås
Published in: Journal of Microbiological Methods, 2022, ISSN 1872-8359
Publisher: Elsevier
DOI: 10.1016/j.mimet.2022.106418

Infection prevention and control practices of ambulatory veterinarians: A questionnaire study in Finland

Author(s): Marie Verkola, Terhi Järvelä, Asko Järvinen, Pikka Jokelainen, Anna‐Maija Virtala, Paula M. Kinnunen, Annamari Heikinheimo
Published in: Veterinary Medicine and Science, 2021, ISSN 2053-1095
Publisher: Veterinary Medicine and Science
DOI: 10.1002/vms3.464

Corynebacterium rouxii sp. nov., a novel member of the diphtheriae species complex

Author(s): Badell, E., Hennart, M., Rodrigues, C., Passet, V., Dazas, M., Panunzi, L., Bouchez, V., Carmi-Leroy, A., Toubiana, J., Brisse, S.
Published in: Research in Microbiology, 2020, ISSN 1769-7123
Publisher: ScienceDirect
DOI: 10.1016/j.resmic.2020.02.003

Impact of animal saliva on the performance of rapid antigen tests for detection of SARS-CoV-2 (wildtype and variants B.1.1.7 and B.1.351)

Author(s): Hagag IT, Weber S, Sadeghi B, Groschup MH, Keller M.
Published in: Veterinary Microbiology, 2021, ISSN 1873-2542
Publisher: ScienceDirect
DOI: 10.1016/j.vetmic.2021.109243

Draft Genome Sequences of Two Listeria monocytogenes Strains Isolated from Invasive Snails (Arion vulgaris) in Austria in 2019

Author(s): Ariane Pietzka, Andrea Murer, Anna Lennkh, Kathrin Hauser, Kornelia Vötsch, Burkhard Springer, Franz Allerberger, Werner Ruppitsch
Published in: Microbiology Resource Announcements, 10/21, 2021, ISSN 2576-098X
Publisher: American Society of Microbiology
DOI: 10.1128/mra.00375-21

Comparative phylogenomics of ESBL-, AmpC- and carbapenemase-producing Klebsiella pneumoniae originating from companion animals and humans

Author(s): Garcia-Fierro, Raquel; Drapeau, Antoine; Dazas, Melody; Saras, Estelle; Rodrigues, Carla; Brisse, Sylvain; Madec, Jean-Yves; Haenni, Marisa
Published in: Journal of antimicrobial chemotherapy, 2022, ISSN 1460-2091
Publisher: Oxford Journals
DOI: 10.1093/jac/dkac041

Analysis of COMPASS, a New Comprehensive Plasmid Database Revealed Prevalence of Multireplicon and Extensive Diversity of IncF Plasmids

Author(s): Pierre-Emmanuel Douarre, Ludovic Mallet, Nicolas Radomski, Arnaud Felten, Michel-Yves Mistou
Published in: Frontiers in Microbiology, 11, 2020, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2020.00483

Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands

Author(s): Bas B. Oude Munnink, David F. Nieuwenhuijse, Mart Stein, Áine O’Toole, Manon Haverkate, Madelief Mollers, Sandra K. Kamga, Claudia Schapendonk, Mark Pronk, Pascal Lexmond, Anne van der Linden, Theo Bestebroer, Irina Chestakova, Ronald J. Overmars, Stefan van Nieuwkoop, Richard Molenkamp, Annemiek A. van der Eijk, Corine GeurtsvanKessel, Harry Vennema, Adam Meijer, Andrew Rambaut, Jaap van Disse
Published in: Nature Medicine, 26/9, 2020, Page(s) 1405-1410, ISSN 1078-8956
Publisher: Nature Publishing Group
DOI: 10.1038/s41591-020-0997-y

Assessing Environmental Factors within the One Health Approach

Author(s): Sarah Humboldt-Dachroeden, Alberto Mantovani
Published in: Medicina, 57/3, 2021, Page(s) 240, ISSN 1648-9144
Publisher: MDPI Open Access Journals
DOI: 10.3390/medicina57030240

Recognising the substantial burden of neglected pandemics cystic and alveolar echinococcosis

Author(s): Adriano Casulli
Published in: The Lancet Global Health, 8/4, 2020, Page(s) e470-e471, ISSN 2214-109X
Publisher: Elsevier BV
DOI: 10.1016/s2214-109x(20)30066-8

Modelling spread and surveillance of Mycobacterium avium subsp. paratuberculosis in the Swedish cattle trade network

Author(s): Thomas Rosendal, Stefan Widgren, Karl Ståhl, Jenny Frössling
Published in: Preventive Veterinary Medicine, 183, 2020, Page(s) 105152, ISSN 0167-5877
Publisher: Elsevier BV
DOI: 10.1016/j.prevetmed.2020.105152

A ready-to-use dose-response model of Campylobacter jejuni implemented in the FSKX-standard

Author(s): UNDERMANN EM, NAUTA M, SWART A.
Published in: Food and Ecological Systems Modelling Journal, 2021, ISSN 2603-4301
Publisher: Sofia Pensoft Publishers
DOI: 10.3897/fmj.2.63309

Participation in One Health Networks and Involvement in the COVID-19 Pandemic Response: A Global Study

Author(s): Streichert, Laura C; Sepe, Ludovico P; Jokelainen, Pikka; Stroud, Cheryl M; Berezowski, John; Del Rio Vilas, Víctor J
Published in: Frontiers in public health, 24 February 2022, 2022, ISSN 2296-2565
Publisher: Frontiers Media S.A
DOI: 10.3389/fpubh.2022.830893

A large panel of chicken cells are invaded in vivo by Salmonella Typhimurium even when depleted of all known invasion factors.

Author(s): S. M. Roche; P. Velge; I. Virlogeux-Payant
Published in: Open Biology, Volume 11, Issue 11, 2021, ISSN 2046-2441
Publisher: Royal Society Publishing
DOI: 10.1098/rsob.210117

Concomitant carriage of KPC-producing and non-KPC-producing Klebsiella pneumoniae ST512 within a single patient

Author(s): Agnès B Jousset, Rémy A Bonnin, Julie Takissian, Delphine Girlich, Liliana Mihaila, Nicolas Cabanel, Laurent Dortet, Philippe Glaser, Thierry Naas
Published in: Journal of Antimicrobial Therapy, 2020, ISSN 1460-2091
Publisher: Journal of Antimicrobial Chemotherapy
DOI: 10.1093/jac/dkaa137

A statistical modelling approach for source attribution meta-analysis of sporadic infection with foodborne pathogens

Author(s): Lapo Mughini-Gras,Elisa Benincà,Scott A. McDonald,Aarieke de Jong,Jurgen Chardon,Eric Evers,Axel A. Bonačić Marinović
Published in: Zoonoses and Public Health, 2022, ISSN 1863-2378
Publisher: Zoonoses and Public Health
DOI: 10.1111/zph.12937

One Health Surveillance Codex: promoting the adoption of One Health solutions within and across European countries

Author(s): Filter, Matthias; Buschhardt, Tasja; Dórea, Fernanda; Lopez de Abechuco, Estibaliz; Günther, Taras; Sundermann, Esther M.; Gethmann, Jörn; Dups-Bergmann, Johanna; Lagesen, Karin; Ellis-Iversen, Johanne
Published in: One Health, 2021, ISSN 2352-7714
Publisher: Elsevier
DOI: 10.1016/j.onehlt.2021.100233

Molecular analysis suggests that Namibian cheetahs (Acinonyx jubatus) are definitive hosts of a so far undescribed Besnoitia species

Author(s): Gereon Schares, Maike Joeres, Franziska Rachel, Mareen Tuschy, Gábor Á. Czirják, Pavlo Maksimov, Franz J. Conraths, Bettina Wachter
Published in: Parasites & Vectors, 14/1, 2021, ISSN 1756-3305
Publisher: BioMed Central
DOI: 10.1186/s13071-021-04697-3

The Glossaryfication Web Service: an automated glossary creation tool to support the One Health community

Author(s): Nazareno Scaccia, Taras Günther, Estibaliz Lopez de Abechuco, Matthias Filter Abstract
Published in: Research Ideas and Outcomes 7: e70183, 2021, ISSN 2683-0183
Publisher: Sofia Pensoft
DOI: 10.3897/rio.7.e70183

Cystic Echinococcosis: Clinical, Immunological, and Biomolecular Evaluation of Patients from Sardinia (Italy)

Author(s): Cinzia Santucciu, Piero Bonelli, Angela Peruzzu, Alessandro Fancellu, Vincenzo Marras, Antonello Carta, Scilla Mastrandrea, Giorgio Bagella, Toni Piseddu, Stefano Profili, Alberto Porcu, Giovanna Masala
Published in: Pathogens, 9/11, 2020, Page(s) 907, ISSN 2076-0817
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pathogens9110907

Expanding the Known Repertoire of C-Type Lectin Receptors Binding to Toxoplasma gondii Oocysts Using a Modified High-Resolution Immunofluorescence Assay

Author(s): Benedikt T. Fabian, Bernd Lepenies, Gereon Schares, Jitender P. Dubey, Furio Spano, Frank Seeber
Published in: mSphere, 6/2, 2021, ISSN 2379-5042
Publisher: American Society for Microbiology
DOI: 10.1128/msphere.01341-20

Exposure to Quaternary Ammonium Compounds Selects Resistance to Ciprofloxacin in Listeria monocytogenes

Author(s): Alizée Guérin, Arnaud Bridier, Patricia Le Grandois, Yann Sévellec, Federica Palma, Benjamin Félix, Sophie Roussel, Christophe Soumet
Published in: Pathogens, 10/2, 2021, Page(s) 220, ISSN 2076-0817
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pathogens10020220

Differential susceptibility of SARS‐CoV‐2 in animals: Evidence of ACE2 host receptor distribution in companion animals, livestock and wildlife by immunohistochemical characterisation

Author(s): Fabian Z. X. Lean, Alejandro Núñez, Simon Spiro, Simon L. Priestnall, Sandra Vreman, Dalan Bailey, Joe James, Ethan Wrigglesworth, Alejandro Suarez‐Bonnet, Carina Conceicao, Nazia Thakur, Alexander M.P. Byrne, Stuart Ackroyd, Richard J. Delahay, Wim H. M. van der Poel, Ian H. Brown, Anthony R. Fooks, Sharon M. Brookes.
Published in: Transboundary and Emerging Diseases, 2022, ISSN 1865-1674
Publisher: Blackwell-Wiss.-Verl
DOI: 10.1111/tbed.14232

A Retrospective Cohort Study on Human Cystic Echinococcosis in Khyber Pakhtunkhwa Province (Pakistan) Based on 16 Years of Hospital Discharge Records

Author(s): Huma Khan1, Adriano Casulli, Majid Fasihi Harandi, Muhammad Sohail Afzal,Muhammad Arif Nadeem Saqib6and Haroon Ahmed1,
Published in: Pathogens, 2022, ISSN 2076-0817
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pathogens11020194

The Prevalence, Counts, and MLST Genotypes of Campylobacter in Poultry Meat and Genomic Comparison with Clinical Isolates.

Author(s): Tedersoo, T.; Roasto, M.; Mäesaar, M.; Kisand, V.; Ivanova, M.; Meremäe, K.
Published in: Poultry science, 2022, ISSN 1525-3171
Publisher: Elsevier
DOI: 10.1016/j.psj.2022.101703

Genomic epidemiology and strain taxonomy of Corynebacterium diphtheriae.

Author(s): Guglielmini J., Hennart M., Badell E., Toubiana J., Criscuolo A., Brisse S., 2021.
Published in: Journal of Clinical Microbiology, 2021, ISSN 2379-5042
Publisher: American Society for Microbiology
DOI: 10.1128/jcm.01581-21

Parasitic Intestinal Protists of Zoonotic Relevance Detected in Pigs by Metabarcoding and Real-Time PCR

Author(s): Christen Rune Stensvold, Kateřina Jirků-Pomajbíková, Katrine Wegener Tams, Pikka Jokelainen, Rebecca P. K. D. Berg, Ellinor Marving, Randi Føns Petersen, Lee O’Brien Andersen, Øystein Angen, Henrik Vedel Nielsen
Published in: Microorganisms, 9/6, 2021, Page(s) 1189, ISSN 2076-2607
Publisher: Microorganisms
DOI: 10.3390/microorganisms9061189

Coverage of the national surveillance system for human Salmonella infections, Belgium, 2016-2020

Author(s): Nina Van Goethem; An Van Den Bossche; Pieter-Jan Ceyssens,; Adrien Lajot; Wim Coucke; Kris Vernelen; Nancy H. C. Roosens; Sigrid C. J. De Keersmaecker; Dieter Van Cauteren; Wesley Mattheus
Published in: PLOS ONE, 26 August 2021, 2021, ISSN 1932-6203
Publisher: Public Library of Science
DOI: 10.1371/journal.pone.0256820

A Peek into the Plasmidome of Global Sewage

Author(s): Philipp Kirstahler, Frederik Teudt, Saria Otani, Frank M. Aarestrup, Sünje Johanna Pamp
Published in: mSystems, 6/3, 2021, ISSN 2379-5077
Publisher: msystems
DOI: 10.1128/msystems.00283-21

A validated method to identify Echinococcus granulosus sensu lato at species level

Author(s): F. Santolamazza, A. Santoro, A. Possenti, S.M. Cacciò, A. Casulli
Published in: Infection, Genetics and Evolution, 85, 2020, Page(s) 104575, ISSN 1567-1348
Publisher: Elsevier BV
DOI: 10.1016/j.meegid.2020.104575

New genetic biomarkers to differentiate non-pathogenic from clinically relevant Bacillus cereus strains

Author(s): Devon W. Kavanaugh, Benjamin Glasset, Rozenn Dervyn, Cyprien Guérin, Sandra Plancade, Sabine Herbin, Anne Brisabois, Pierre Nicolas, Nalini Ramarao
Published in: Clinical Microbiology and Infection, 2021, ISSN 1198-743X
Publisher: Blackwell Publishing Inc.
DOI: 10.1016/j.cmi.2021.05.035

Temporal dynamics of the fecal microbiota in veal calves in a 6-month field trial

Author(s): Méril Massot, Marisa Haenni, Thu Thuy Nguyen, Jean-Yves Madec, France Mentré, Erick Denamur
Published in: Animal Microbiome, 2/1, 2020, ISSN 2524-4671
Publisher: Animal microbiome
DOI: 10.1186/s42523-020-00052-6

Dissemination Routes of Carbapenem and Pan-Aminoglycoside Resistance Mechanisms in Hospital and Urban Wastewater Canalizations of Ghana.

Author(s): Delgado-Blas, J. F.; Valenzuela Agüi, C.; Marin Rodriguez, E.; Serna, C.; Montero, N.; Saba, C. K. S.; Gonzalez-Zorn, B.
Published in: Antimicrobial Chemotherapy, 2022, ISSN 2379-5077
Publisher: ASM
DOI: 10.1128/msystems.01019-21

Ongoing diphtheria outbreak in Yemen: a cross-sectional and genomic epidemiology study

Author(s): Badell, E., Alharazi, A., Criscuolo, A., Almoayed, K.A.A., Lefrancq, N., Bouchez, V., Guglielmini, J., Hennart, M., Carmi-Leroy, A., Zidane, N., Pascal-Perrigault, M., Lebreton, M., Martini, H., Salje, H., Toubiana, J., Dureab, F., Dhabaan, G., Brisse, S., Rawah, A.A., Aldawla, M.A., Al-Awdi, E.M., Al-Moalmy, N.M., Al-Shami, H.Z., Al-Somainy, A.A.,
Published in: Microbe, 2021, ISSN 2542-5196
Publisher: The Lancet
DOI: 10.1016/s2666-5247(21)00094-x

A real-time quantitative polymerase chain reaction for the specific detection of Hammondia hammondi and its differentiation from Toxoplasma gondii

Author(s): Gereon Schares, Majda Globokar Vrhovec, Mareen Tuschy, Maike Joeres, Andrea Bärwald, Bretislav Koudela, Jitender P. Dubey, Pavlo Maksimov, Franz J. Conraths
Published in: Parasites & Vectors, 14/1, 2021, ISSN 1756-3305
Publisher: BioMed Central
DOI: 10.1186/s13071-020-04571-8

Advanced Methods for Detection of Bacillus cereus and Its Pathogenic Factors

Author(s): Nalini Ramarao, Seav-Ly Tran, Marco Marin, Jasmina Vidic
Published in: Sensors, 20/9, 2020, Page(s) 2667, ISSN 1424-8220
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/s20092667

Identification of molecular biomarkers associated with disease progression in the testis of bulls infected with Besnoitia besnoiti

Author(s): González-Barrio D; Diezma-Díaz C; Gutiérrez-Expósito D; Tabanera E; Jiménez-Meléndez A; Pizarro M; González-Huecas M; Ferre I; Ortega-Mora LM; Álvarez-García G
Published in: Veterinary Research, 2021, ISSN 1297-9716
Publisher: Veterinary Research
DOI: 10.1186/s13567-021-00974-2

The SARS-CoV-2 Reproduction Number R0 in Cats

Author(s): Gonzales JL, de Jong MCM, Gerhards NM, Van der Poel WHM.
Published in: Viruses, 2021, ISSN 1999-4915
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13122480

Increased viral read counts and metagenomic full genome characterization of porcine astrovirus 4 and Posavirus 1 in sows in a swine farm with unexplained neonatal piglet diarrhea

Author(s): Steven Van Borm, Kevin Vanneste, Qiang Fu, Dominiek Maes, Alexandra Schoos, Eline Vallaey, Frank Vandenbussche
Published in: Virus Genes, 2020, ISSN 0920-8569
Publisher: Kluwer Academic Publishers
DOI: 10.1007/s11262-020-01791-z

SARS-CoV-2 surveillance in Italy through phylogenomic inferences based on Hamming distances derived from pan-SNPs, -MNPs and -InDels

Author(s): (7) Di Pasquale, A.; Radomski, N.; Mangone, I.; Calistri, P.; Lorusso, A.; Cammà, C.
Published in: BMC Genomics, 2021, ISSN 1471-2164
Publisher: BioMed Central
DOI: 10.1186/s12864-021-08112-0

Role of systemic infection, cross contaminations and super-shedders in Salmonella carrier state in chicken

Author(s): Pierrette Menanteau, Florent Kempf, Jérôme Trotereau, Isabelle Virlogeux-Payant, Edouard Gitton, Julie Dalifard, Irene Gabriel, Ivan Rychlik, Philippe Velge
Published in: Frontiers in Public Health, 24 February 2022, 2022, ISSN 1462-2920
Publisher: Switzerland
DOI: 10.1111/1462-2920.14294

Identification of Oocyst-Driven Toxoplasma gondii Infections in Humans and Animals through Stage-Specific Serology—Current Status and Future Perspectives

Author(s): Álvarez García, G; Davidson, R; Jokelainen, P; Klevar, S; Spano, F; Seeber, F
Published in: Issue 11 -Microorganisms, 2021, ISSN 2076-2607
Publisher: Microorganisms
DOI: 10.3390/microorganisms9112346

Antibiotic Resistance in Campylobacter Spp. Isolated from Broiler Chicken Meat and Human Patients in Estonia.

Author(s): Tedersoo, T.; Roasto, M.; Mäesaar, M.; Häkkinen, L.; Kisand, V.; Ivanova, M.; Valli, M. H.; Meremäe, K.
Published in: microorganisms, 2022, ISSN 2076-2607
Publisher: MDPI AG, 2013-
DOI: 10.3390/microorganisms10051067

Novel IncFII plasmid harbouring bla NDM-4 in a carbapenem-resistant Escherichia coli of pig origin, Italy

Author(s): Elena L Diaconu, Virginia Carfora, Patricia Alba, Paola Di Matteo, Fiorentino Stravino, Carmela Buccella, Elena Dell’Aira, Roberta Onorati, Luigi Sorbara, Antonio Battisti, Alessia Franco
Published in: Journal of Antimicrobial Chemotherapy, 75/12, 2020, Page(s) 3475-3479, ISSN 0305-7453
Publisher: Oxford University Press
DOI: 10.1093/jac/dkaa374

Molecular Characterization and Antimicrobial Susceptibility of C. jejuni Isolates from Italian Wild Bird Populations

Author(s): Francesca Marotta, Anna Janowicz, Lisa Di Marcantonio, Claudia Ercole, Guido Di Donato, Giuliano Garofolo, Elisabetta Di Giannatale
Published in: Pathogens, 9/4, 2020, Page(s) 304, ISSN 2076-0817
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pathogens9040304

A FSKX compliant source attribution model for salmonellosis and a look at its major hidden pitfalls.

Author(s): Sundermann EM, Correia Carreira G, Käsbohrer A (2021).
Published in: Food Modelling Journal, 2021, ISSN 2603-4301
Publisher: Sofia: Pensoft Publishers, 2022
DOI: 10.3897/fmj.2.70008

Reduction of Salmonella Typhimurium Cecal Colonisation and Improvement of Intestinal Health in Broilers Supplemented with Fermented Defatted ‘Alperujo’, an Olive Oil By-Product

Author(s): Agustín Rebollada-Merino, María Ugarte-Ruiz, Marta Hernández, Pedro Miguela-Villoldo, David Abad, David Rodríguez-Lázaro, Lucía de Juan, Lucas Domínguez, Antonio Rodríguez-Bertos
Published in: Animals, 10/10, 2020, Page(s) 1931, ISSN 2076-2615
Publisher: Animals
DOI: 10.3390/ani10101931

Comparison of Direct and Indirect Toxoplasma gondii Detection and Genotyping in Game: Relationship and Challenges

Author(s): Kaya C. Stollberg, Gereon Schares, Anne Mayer-Scholl, Iryna Hrushetska, Susanne Diescher, Annette Johne, Martin H. Richter, Nadja S. Bier
Published in: Microorganisms, 9/8, 2021, Page(s) 1663, ISSN 2076-2607
Publisher: Germany
DOI: 10.3390/microorganisms9081663

Novel enteric viruses in fatal enteritis of grey squirrels

Author(s): Akbar Dastjerdi, Camilla Benfield, David Everest, Mark F. Stidworthy, Roland Zell
Published in: Journal of General Virology, 101/7, 2020, Page(s) 746-750, ISSN 0022-1317
Publisher: Society for General Microbiology
DOI: 10.1099/jgv.0.001431

Bayesian Analysis of Three Methods for Diagnosis of Cystic Echinococcosis in Sheep

Author(s): Piero Bonelli, Federica Loi, Maria Giovanna Cancedda, Angela Peruzzu, Elisabetta Antuofermo, Elisabetta Pintore, Toni Piseddu, Giovanni Garippa, Giovanna Masala
Published in: Pathogens, 9/10, 2020, Page(s) 796, ISSN 2076-0817
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pathogens9100796

Attention to the Tripartite’s one health measures in national action plans on antimicrobial resistance.

Author(s): Munkholm, L., Rubin, O., Bækkeskov, E. & Humboldt-Dachroeden, S.
Published in: Journal of Public Health Policy, 2021, ISSN 0197-5897
Publisher: Palgrave Macmillan Ltd.
DOI: 10.1057/s41271-021-00277-y

Survey on Shedding of Selected Pathogenic, Zoonotic or Antimicrobial Resistant Bacteria by South American Camelids in Central Germany.

Author(s): B González-Santamarina; C Schnee; H Köhler; M Weber; U Methner; C Seyboldt; C Berens; C Menge.
Published in: Vetline.de, 2022, ISSN 0005-9366
Publisher: Schluetersche GmbH und Co.
DOI: 10.2376/1439-0299-2021-21

Complex Network Analysis to Understand Trading Partnership in French Swine Production.

Author(s): Hammami, P.; Widgren, S.; Grosbois, V.; Apolloni, A.; Rose, N.; Andraud, M.
Published in: PloS one, 2022, ISSN 1932-6203
Publisher: Public Library of Science
DOI: 10.1371/journal.pone.0266457

Community-acquired infection caused by the uncommon hypervirulent Klebsiella pneumoniae ST66-K2 lineage

Author(s): Carla Rodrigues, Camille d’Humières, Grégory Papin, Virginie Passet, Etienne Ruppé, Sylvain Brisse
Published in: Microbial Genomics, 6/8, 2020, ISSN 2057-5858
Publisher: Microbial Genomics
DOI: 10.1099/mgen.0.000419

A one health glossary to support communication and information exchange between the human health, animal health and food safety sectors

Author(s): Tasja Buschhardt, Taras Günther, Taran Skjerdal, Mia Torpdahl, Jörn Gethmann, Maria-Eleni Filippitzi, Catharina Maassen, Solveig Jore, Johanne Ellis-Iversen, Matthias Filter
Published in: One Health, 13, 2021, Page(s) 100263, ISSN 2352-7714
Publisher: ScienceDirect
DOI: 10.1016/j.onehlt.2021.100263

Monitoring of Antimicrobial Resistance to Aminoglycosides and Macrolides in Campylobacter coli and Campylobacter jejuni From Healthy Livestock in Spain (2002–2018)

Author(s): Vicente Lopez-Chavarrias, Maria Ugarte-Ruiz, Carmen Barcena, Adolfo Olarra, Maria Garcia, Jose Luis Saez, Cristina de Frutos, Tania Serrano, Iratxe Perez, Miguel Angel Moreno, Lucas Dominguez, Julio Alvarez
Published in: Frontiers in Microbiology, 12, 2021, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2021.689262

Isolation Procedure for CP E. coli from Caeca Samples under Review towards an Increased Sensitivity

Author(s): Natalie Pauly, Yvonne Klaar, Tanja Skladnikiewicz-Ziemer, Katharina Juraschek, Mirjam Grobbel, Jens André Hammerl, Lukas Hemmers, Annemarie Käsbohrer, Stefan Schwarz, Diana Meemken, Bernd-Alois Tenhagen, Alexandra Irrgang
Published in: Microorganisms, 9/5, 2021, Page(s) 1105, ISSN 2076-2607
Publisher: Microorganisms
DOI: 10.3390/microorganisms9051105

A Longitudinal Survey of Antibiotic-Resistant Enterobacterales in the Irish Environment, 2019–2020

Author(s): ooban, Brigid; Fitzhenry, Kelly; O'Connor, Louise; Miliotis, Georgios; Joyce, Aoife; Chueiri, Alexandra; Louise Farrell, Maeve; DeLappe, Niall; Tuohy, Alma; Cormican, Martin; Morris, Dearbhaile
Published in: Science of The Total Environment, Volume 828, 1 July 2022, 154488, 2022, ISSN 1879-1026
Publisher: Elsevier
DOI: 10.1016/j.scitotenv.2022.154488

Veterinary Students Have a Higher Risk of Contracting Cryptosporidiosis when Calves with High Fecal Cryptosporidium Loads Are Used for Fetotomy Exercises

Author(s): Daniel Thomas-Lopez, Luise Müller, Lasse S. Vestergaard, Mette Christoffersen, Anne-Marie Andersen, Pikka Jokelainen, Jørgen Steen Agerholm, Christen Rune Stensvold
Published in: Applied and Environmental Microbiology, 86/19, 2020, ISSN 0099-2240
Publisher: American Society for Microbiology
DOI: 10.1128/aem.01250-20

Loop-Mediated Isothermal Amplification (LAMP): For the Rapid Detection of Nucleic Acid Targets in Resource-Limited Settings

Author(s): Hassan, M. M.; Grist, L. F.; Poirier, A. C.; La Ragione, R. M. JMM Profile:
Published in: Journal of medical microbiology, 2022, ISSN 1473-5644
Publisher: microbiology society
DOI: 10.1099/jmm.0.001522

An alternative workflow for molecular detection of SARS-CoV-2 – escape from the NA extraction kit-shortage, Copenhagen, Denmark, March 2020

Author(s): Anna S. Fomsgaard, Maiken Worsøe Rosenstierne
Published in: Eurosurveillance, 25/14, 2020, ISSN 1560-7917
Publisher: Eurosurveillance
DOI: 10.2807/1560-7917.es.2020.25.14.2000398

ChromID® CARBA Agar Fails to Detect Carbapenem-Resistant Enterobacteriaceae With Slightly Reduced Susceptibility to Carbapenems

Author(s): Natalie Pauly, Jens A. Hammerl, Mirjam Grobbel, Bernd-Alois Tenhagen, Annemarie Käsbohrer, Sandra Bisenius, Jannika Fuchs, Sabine Horlacher, Holger Lingstädt, Ute Mauermann, Silke Mitro, Margit Müller, Stefan Rohrmann, Arthur P. Schiffmann, Birgit Stührenberg, Pia Zimmermann, Stefan Schwarz, Diana Meemken, Alexandra Irrgang
Published in: Frontiers in Microbiology, 11, 2020, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2020.01678

Morphological Characteristics of Alveolar and Cystic Echinococcosis Lesions in Human Liver and Bone

Author(s): Adriano Casulli
Published in: Pathogens, 10(10), 1326, 2021, ISSN 2076-0817
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pathogens10101326

Antimicrobial Usages and Antimicrobial Resistance in Commensal Escherichia coli From Veal Calves in France: Evolution During the Fattening Process

Author(s): Emilie Gay, Maxime Bour, Géraldine Cazeau, Nathalie Jarrige, Christophe Martineau, Jean-Yves Madec, Marisa Haenni
Published in: Frontiers in Microbiology, 10, 2019, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2019.00792

Non-Typhi, non-Paratyphi Salmonella-related hospitalisations in Spain: trends, clinical aspects, risk factors for worse prognosis and hospital costs

Author(s): Macarena Garrido-Estepa, P. Latasa, G. Y. Ordóñez-León, M. Martínez-Avilés, A. de la Torre, L. García-Comas
Published in: European Journal of Clinical Microbiology & Infectious Diseases, 38/2, 2019, Page(s) 337-346, ISSN 0934-9723
Publisher: Springer Verlag
DOI: 10.1007/s10096-018-3433-1

Identification of Klebsiella pneumoniae, Klebsiella quasipneumoniae, Klebsiella variicola and Related Phylogroups by MALDI-TOF Mass Spectrometry

Author(s): Carla Rodrigues, Virginie Passet, Andriniaina Rakotondrasoa, Sylvain Brisse
Published in: Frontiers in Microbiology, 9, 2018, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2018.03000

Analysis of consumer food purchase data used for outbreak investigations, a review

Author(s): Frederik T Møller, Kåre Mølbak, Steen Ethelberg
Published in: Eurosurveillance, 23/24, 2018, ISSN 1560-7917
Publisher: European Centre for Disease Prevention and Control (ECDC)
DOI: 10.2807/1560-7917.es.2018.23.24.1700503

Population Genetic Structure of Listeria monocytogenes Strains Isolated From the Pig and Pork Production Chain in France

Author(s): Benjamin Félix, Carole Feurer, Aurelien Maillet, Laurent Guillier, Evelyne Boscher, Annaëlle Kerouanton, Martine Denis, Sophie Roussel
Published in: Frontiers in Microbiology, 9, 2018, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2018.00684

Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov.

Author(s): Carla Rodrigues, Virginie Passet, Andriniaina Rakotondrasoa, Thierno Abdoulaye Diallo, Alexis Criscuolo, Sylvain Brisse
Published in: Research in Microbiology, 170/3, 2019, Page(s) 165-170, ISSN 0923-2508
Publisher: Elsevier BV
DOI: 10.1016/j.resmic.2019.02.003

Field samplings of Ixodes ricinus ticks from a tick-borne encephalitis virus micro-focus in Northern Zealand, Denmark

Author(s): Andreas Petersen, Maiken Worsøe Rosenstierne, Morten Rasmussen, Kurt Fuursted, Henrik Vedel Nielsen, Lee O’Brien Andersen, René Bødker, Anders Fomsgaard
Published in: Ticks and Tick-borne Diseases, 10/5, 2019, Page(s) 1028-1032, ISSN 1877-959X
Publisher: Elsevier BV
DOI: 10.1016/j.ttbdis.2019.05.005

Outbreak of Yersiniabactin-producing Klebsiella pneumoniae in a Neonatal Intensive Care Unit

Author(s): Lukas Wisgrill, Sarah Lepuschitz, Marion Blaschitz, Judith Rittenschober-Böhm, Magda Diab-El Schahawi, Sören Schubert, Alexander Indra, Angelika Berger
Published in: The Pediatric Infectious Disease Journal, 38/6, 2019, Page(s) 638-642, ISSN 0891-3668
Publisher: Lippincott Williams & Wilkins Ltd.
DOI: 10.1097/inf.0000000000002258

Effects on Intestinal Mucosal Morphology, Productive Parameters and Microbiota Composition after Supplementation with Fermented Defatted Alperujo (FDA) in Laying Hens

Author(s): Agustín Rebollada-Merino, Carmen Bárcena, María Ugarte-Ruiz, Néstor Porras, Francisco J. Mayoral-Alegre, Irene Tomé-Sánchez, Lucas Domínguez, Antonio Rodríguez-Bertos
Published in: Antibiotics, 8/4, 2019, Page(s) 215, ISSN 2079-6382
Publisher: Antibiotics
DOI: 10.3390/antibiotics8040215

Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov.

Author(s): Cristina Merla, Carla Rodrigues, Virginie Passet, Marta Corbella, Harry A. Thorpe, Teemu V. S. Kallonen, Zhiyong Zong, Piero Marone, Claudio Bandi, Davide Sassera, Jukka Corander, Edward J. Feil, Sylvain Brisse
Published in: Frontiers in Microbiology, 10, 2019, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2019.02360

The ZKIR Assay, a Real-Time PCR Method for the Detection of Klebsiella pneumoniae and Closely Related Species in Environmental Samples

Author(s): Elodie Barbier, Carla Rodrigues, Geraldine Depret, Virginie Passet, Laurent Gal, Pascal Piveteau, Sylvain Brisse
Published in: Applied and Environmental Microbiology, 86/7, 2020, ISSN 0099-2240
Publisher: American Society for Microbiology
DOI: 10.1128/AEM.02711-19

Attributable sources of community-acquired carriage of Escherichia coli containing β-lactam antibiotic resistance genes: a population-based modelling study

Author(s): Lapo Mughini-Gras, Alejandro Dorado-García, Engeline van Duijkeren, Gerrita van den Bunt, Cindy M Dierikx, Marc J M Bonten, Martin C J Bootsma, Heike Schmitt, Tine Hald, Eric G Evers, Aline de Koeijer, Wilfrid van Pelt, Eelco Franz, Dik J Mevius, Dick J J Heederik
Published in: The Lancet Planetary Health, 3/8, 2019, Page(s) e357-e369, ISSN 2542-5196
Publisher: The Lancet
DOI: 10.1016/s2542-5196(19)30130-5

The shufflon of IncI1 plasmids is rearranged constantly during different growth conditions

Author(s): Michael S.M. Brouwer, Stephanie D. Jurburg, Frank Harders, Arie Kant, Dik J. Mevius, Adam P. Roberts, Alex Bossers
Published in: Plasmid, 102, 2019, Page(s) 51-55, ISSN 0147-619X
Publisher: Academic Press
DOI: 10.1016/j.plasmid.2019.03.003

Stepwise evolution and convergent recombination underlie the global dissemination of carbapenemase-producing Escherichia coli

Author(s): Rafael Patiño-Navarrete, Isabelle Rosinski-Chupin, Nicolas Cabanel, Lauraine Gauthier, Julie Takissian, Jean-Yves Madec, Monzer Hamze, Remy A. Bonnin, Thierry Naas, Philippe Glaser
Published in: Genome Medicine, 12/1, 2020, ISSN 1756-994X
Publisher: BioMed Central
DOI: 10.1186/s13073-019-0699-6

Salmonella Surveillance Systems in Swine and Humans in Spain: A Review

Author(s): Marta Martínez-Avilés, Macarena Garrido-Estepa, Julio Álvarez, Ana de la Torre
Published in: Veterinary Sciences, 6/1, 2019, Page(s) 20, ISSN 2306-7381
Publisher: MDPI
DOI: 10.3390/vetsci6010020

Toxoplasma gondii infection and toxoplasmosis in farm animals: Risk factors and economic impact

Author(s): S. Stelzer, W. Basso, J. Benavides Silván, L.M. Ortega-Mora, P. Maksimov, J. Gethmann, F.J. Conraths, G. Schares
Published in: Food and Waterborne Parasitology, 15, 2019, Page(s) e00037, ISSN 2405-6766
Publisher: Food and Waterborne parasitology
DOI: 10.1016/j.fawpar.2019.e00037

Campylobacter in chicken – Critical parameters for international, multicentre evaluation of air sampling and detection methods

Author(s): Gro S. Johannessen, Giuliano Garofolo, Gabriella Di Serafino, Ivana Koláčková, Renáta Karpíšková, Kinga Wieczorek, Jacek Osek, Julia Christensen, Mona Torp, Jeffrey Hoorfar
Published in: Food Microbiology, 90, 2020, Page(s) 103455, ISSN 0740-0020
Publisher: Academic Press
DOI: 10.1016/j.fm.2020.103455

MLST-based genetic relatedness of Campylobacter jejuni isolated from chickens and humans in Poland

Author(s): Kinga Wieczorek, Tomasz Wołkowicz, Jacek Osek
Published in: PLOS ONE, 15/1, 2020, Page(s) e0226238, ISSN 1932-6203
Publisher: Public Library of Science
DOI: 10.1371/journal.pone.0226238

Microsatellite Investigations of Multiple Echinococcus Granulosus Sensu Stricto Cysts in Single Hosts Reveal Different Patterns of Infection Events between Livestock and Humans

Author(s): Selim M’rad, Myriam Oudni-M’rad, Vanessa Bastid, Laure Bournez, Sana Mosbahi, Abdelallatif Nouri, Hamouda Babba, Frédéric Grenouillet, Franck Boué, Gérald Umhang
Published in: Pathogens, 9/6, 2020, Page(s) 444, ISSN 2076-0817
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pathogens9060444

"Effect of Biscuit Flour and Fermented Defatted ""Alperujo"" Co-Administration on Intestinal Mucosa Morphology and Productive Performance in Laying Hens"

Author(s): Porras, Néstor; Rebollada-Merino, Agustín; Bárcena, Carmen; Mayoral-Alegre, Francisco J.; Lomillos, Juan Manuel; Domínguez, Lucas; Rodríguez-Bertos, Antonio
Published in: Animals, Vol 11, Issue 4, 2021, ISSN 2076-2615
Publisher: Multidisciplinary Digital Publishing Institute
DOI: 10.3390/ani11041075

Mining Public Metagenomes for Environmental Surveillance of Parasites: A Proof of Principle

Author(s): Franssen Frits; Janse Ingmar; Janssen Dennis; Caccio Simone M; Vatta Paolo; van der Giessen Joke; van Passel Mark W. J.
Published in: Frontiers in microbiology, 2021, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2021.622356

Population genomics and antimicrobial resistance dynamics of Escherichia coli in wastewater and river environments

Author(s): Jose F. Delgado-Blas, Cristina M. Ovejero, Sophia David, Natalia Montero, William Calero-Caceres, M. Pilar Garcillan-Barcia, Fernando de la Cruz, Maite Muniesa, David M. Aanensen, Bruno Gonzalez-Zorn
Published in: Communications Biology, 4/1, 2021, ISSN 2399-3642
Publisher: Communications publication
DOI: 10.1038/s42003-021-01949-x

Insights into Human Cystic Echinococcosis in the Kurdistan Region, Iraq: Characteristics and Molecular Identification of Cysts

Author(s): Issa, A. R.; Arif, S. H.; Mohammed, A. A.; Santolamazza, F.; Santoro, A.; Mero, W. M. S.; Casulli, A.
Published in: Pathogens, 2022, ISSN 2076-0817
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pathogens11040408

A multi-scale epidemic model of Salmonella infection with heterogeneous shedding

Author(s): Simon Labarthe, Béatrice Laroche, Thi Nhu Tao Nguyen, Bastien Polizzi, Florian Patout, Magali Ribot, Tabea Stegmaier
Published in: ESAIM: Proceedings and Surveys, 67, 2020, Page(s) 261-284, ISSN 2267-3059
Publisher: ESAIM Proceedings
DOI: 10.1051/proc/202067015

Species and Genotypes Belonging to Echinococcus Granulosus Sensu Lato Complex Causing Human Cystic Echinococcosis in Europe (2000–2021): A Systematic Review

Author(s): Casulli, A.; Massolo, A.; Saarma, U.; Umhang, G.; Santolamazza, F.; Santoro, A.
Published in: Parasites & Vectors, 2022, ISSN 1756-3305
Publisher: BioMed Central
DOI: 10.1186/s13071-022-05197-8

DiagnoTop: A Computational Pipeline for Discriminating Bacterial Pathogens without Database Search

Author(s): Diogo Borges Lima, Mathieu Dupré, Marlon Dias Mariano Santos, Paulo Costa Carvalho, Julia Chamot-Rooke
Published in: Journal of the American Society for Mass Spectrometry, 32/6, 2021, Page(s) 1295-1299, ISSN 1044-0305
Publisher: Elsevier BV
DOI: 10.1021/jasms.1c00014

Dietary supplementation with fermented defatted “alperujo” induces modifications of the intestinal mucosa and cecal microbiota of broiler chickens

Author(s): Agustín Rebollada-Merino, María Ugarte-Ruiz, Marta Hernández, Pedro Miguela-Villoldo, David Abad, Pedro Cuesta-Álvaro, David Rodríguez-Lázaro, Lucía de Juan, Lucas Domínguez, Antonio Rodríguez-Bertos
Published in: Poultry Science, 2020, ISSN 0032-5791
Publisher: Poultry Science Association Inc.
DOI: 10.1016/j.psj.2020.07.015

The disease burden of ocular toxoplasmosis in Denmark in 2019: Estimates based on laboratory testing of ocular samples and on publicly available register data

Author(s): Marstrand, J; Kurtzhals, JAL; Fuchs, HJ; Nielsen, HV; Jokelainen, P
Published in: Parasite epidemiology and control, 2021, ISSN 2405-6731
Publisher: Parasite epidemiology and control
DOI: 10.1016/j.parepi.2021.e00229

Comparative Analysis of Genetic Determinants Encoding Cadmium, Arsenic, and Benzalkonium Chloride Resistance in Listeria monocytogenes of Human, Food, and Environmental Origin

Author(s): Tereza Gelbicova, Martina Florianova, Lucie Hluchanova, Alžběta Kalova, Kristýna Korena, Nicol Strakova, Renáta Karpiskova
Published in: Frontiers in Microbiology, 11, 2021, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2020.599882

Monitoring SARS-CoV-2 Circulation and Diversity through Community Wastewater Sequencing, the Netherlands and Belgium

Author(s): Ray Izquierdo-Lara, Goffe Elsinga, Leo Heijnen, Bas B. Oude Munnink, Claudia M.E. Schapendonk, David Nieuwenhuijse, Matthijs Kon, Lu Lu, Frank M. Aarestrup, Samantha Lycett, Gertjan Medema, Marion P.G. Koopmans, Miranda de Graaf
Published in: Emerging Infectious Diseases, 27/5, 2021, Page(s) 1405-1415, ISSN 1080-6040
Publisher: US National Center for Infectious Diseases
DOI: 10.3201/eid2705.204410

Whole genome sequencing data used for surveillance of Campylobacter infections: detection of a large continuous outbreak, Denmark, 2019

Author(s): Katrine Grimstrup Joensen Statens Serum Institut, Department of Bacteria, Parasites and Fungi, Copenhagen, Denmark ; Susanne Schjørring; Mette Rørbæk Gantzhorn; Camilla Thougaard Vester; Hans Linde Nielsen; Jørgen Harald Engberg; Hanne Marie Holt; Steen Ethelberg; Luise Müller; Gudrun Sandø; Eva Møller Nielsen
Published in: Eurosurveilance, 2021, ISSN 1560-7917
Publisher: ECDC
DOI: 10.2807/1560-7917.es.2021.26.22.2001396

Whole-Genome Sequencing to Detect Numerous Campylobacter jejuni Outbreaks and Match Patient Isolates to Sources, Denmark, 2015–2017

Author(s): Katrine G. Joensen, Kristoffer Kiil, Mette R. Gantzhorn, Birgitte Nauerby, Jørgen Engberg, Hanne M. Holt, Hans L. Nielsen, Andreas M. Petersen, Katrin G. Kuhn, Gudrun Sandø, Steen Ethelberg, Eva M. Nielsen
Published in: Emerging Infectious Diseases, 26/3, 2020, Page(s) 523-532, ISSN 1080-6040
Publisher: US National Center for Infectious Diseases
DOI: 10.3201/eid2603.190947

COVID-19 in health-care workers in three hospitals in the south of the Netherlands: a cross-sectional study

Author(s): Reina S Sikkema, Suzan D Pas, David F Nieuwenhuijse, Áine O'Toole, Jaco Verweij, Anne van der Linden, Irina Chestakova, Claudia Schapendonk, Mark Pronk, Pascal Lexmond, Theo Bestebroer, Ronald J Overmars, Stefan van Nieuwkoop, Wouter van den Bijllaardt, Robbert G Bentvelsen, Miranda M L van Rijen, Anton G M Buiting, Anne J G van Oudheusden, Bram M Diederen, Anneke M C Bergmans, Annemiek van der E
Published in: The Lancet Infectious Diseases, 20/11, 2020, Page(s) 1273-1280, ISSN 1473-3099
Publisher: The Lancet Publishing Group
DOI: 10.1016/s1473-3099(20)30527-2

New global targets for NTDs in the WHO roadmap 2021–2030

Author(s): Adriano Casulli
Published in: PLOS Neglected Tropical Diseases, 15/5, 2021, Page(s) e0009373, ISSN 1935-2735
Publisher: Neglected tropical diseases
DOI: 10.1371/journal.pntd.0009373

Opportunities for Improved Disease Surveillance and Control by Use of Integrated Data on Animal and Human Health

Author(s): Hans Houe, Søren Saxmose Nielsen, Liza Rosenbaum Nielsen, Steen Ethelberg, Kåre Mølbak
Published in: Frontiers in Veterinary Science, 6, 2019, ISSN 2297-1769
Publisher: Frontiers in Veterinary Science
DOI: 10.3389/fvets.2019.00301

The cytotoxic potential of Bacillus cereus strains of various origins

Author(s): Benjamin Glasset, Mylène Sperry, Rozenn Dervyn, Sabine Herbin, Anne Brisabois, Nalini Ramarao
Published in: Food Microbiology, 98, 2021, Page(s) 103759, ISSN 0740-0020
Publisher: Academic Press
DOI: 10.1016/j.fm.2021.103759

Mobile colistin resistance gene mcr-1 detected on an IncI1 plasmid in Escherichia coli from meat

Author(s): Michael S.M. Brouwer, Richard N. Goodman, Arie Kant, Dik Mevius, Enas Newire, Adam P. Roberts, Kees T. Veldman
Published in: Journal of Global Antimicrobial Resistance, 23, 2020, Page(s) 145-148, ISSN 2213-7165
Publisher: Elsevier BV
DOI: 10.1016/j.jgar.2020.08.018

In vivo and in vitro models show unexpected degrees of virulence among Toxoplasma gondii type II and III isolates from sheep

Author(s): Mercedes Fernández-Escobar, Rafael Calero-Bernal, Javier Regidor-Cerrillo, Raquel Vallejo, Julio Benavides, Esther Collantes-Fernández, Luis Miguel Ortega-Mora
Published in: Veterinary Research, 52/1, 2021, ISSN 1297-9716
Publisher: Veterinary Research
DOI: 10.1186/s13567-021-00953-7

Characterization of Atypical Shiga Toxin Gene Sequences and Description of Stx2j, a New Subtype

Author(s): Alexander Gill; Forest Dussault; Tanis McMahon; Nicholas Petronella; Xiong Wang; Elizabeth Cebelinski; Flemming Scheutz; Kelly Weedmark; Burton Blais; Catherine Carrillo
Published in: Journal of Clinical Microbiology, 2022, ISSN 0196-8254
Publisher: American Society for Microbiology
DOI: 10.1128/jcm.02229-21

A user-friendly decision support tool to assist one-health risk assessors (2021). One Health

Author(s): Rob Dewar, Christine Gavin, Catherine McCarthy, Rachel A. Taylor, Charlotte Cook, Robin R.L. Simons,
Published in: One Health, 2021, ISSN 2352-7714
Publisher: Elsevier
DOI: 10.1016/j.onehlt.2021.100266

The One Health European Joint Programme (OHEJP), 2018–2022: an exemplary One Health initiative

Author(s): Helen L. Brown, Jade L. Passey, Maria Getino, Isabella Pursley, Piyali Basu, Daniel L. Horton, Roberto M. La Ragione
Published in: Journal of Medical Microbiology, 69/8, 2020, Page(s) 1037-1039, ISSN 0022-2615
Publisher: Society for General Microbiology
DOI: 10.1099/jmm.0.001228

Species Detection within the Echinococcus granulosus sensu lato Complex by Novel Probe-Based Real-Time PCRs

Author(s): Pavlo Maksimov, Hannes Bergmann, Marion Wassermann, Thomas Romig, Bruno Gottstein, Adriano Casulli, Franz J. Conraths
Published in: Pathogens, 9/10, 2020, Page(s) 791, ISSN 2076-0817
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pathogens9100791

Genomic Screening of Antimicrobial Resistance Markers in UK and US Campylobacter Isolates Highlights Stability of Resistance over an 18-Year Period.

Author(s): van Vliet, A. H. M.; Thakur, S.; Prada, J. M.; Mehat, J. W.; La Ragione, R. M.
Published in: veterinary microbiology, 2022, ISSN 2379-5042
Publisher: ASM
DOI: 10.1128/aac.01687-21

Genetic Characterization of a Listeria monocytogenes Serotype IVb Variant 1 Strain Isolated from Vegetal Matrix in Italy

Author(s): Marina Torresi, Massimiliano Orsini, Vicdalia Acciari, Gabriella Centorotola, Valeria Di Lollo, Marco Di Domenico, Daniela Manila Bianchi, Maureen Wakwamba Ziba, Clara Tramuta, Cesare Cammà, Francesco Pomilio
Published in: Microbiology Resource Announcements, 9/33, 2020, ISSN 2576-098X
Publisher: Microbiology Resource Announcements
DOI: 10.1128/mra.00782-20

Changes in serum biomarkers of inflammation in bovine besnoitiosis

Author(s): González-Barrio D; Huertas-López A; Diezma-Díaz C; Ferre I; Cerón JJ; Ortega-Mora LM; Álvarez-García G
Published in: Parasites and vectors, (2021) 14:488, 2021, ISSN 1756-3305
Publisher: BioMed Central
DOI: 10.1186/s13071-021-04991-0

The importance of using whole genome sequencing and extended spectrum beta-lactamase selective media when monitoring antimicrobial resistance

Author(s): Nicholas Duggett, Manal AbuOun, Luke Randall, Robert Horton, Fabrizio Lemma, Jon Rogers, Derrick Crook, Christopher Teale, Muna F. Anjum
Published in: Scientific Reports, 10/1, 2020, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-020-76877-7

Comparison of Phenotypical Antimicrobial Resistance between Clinical and Non-Clinical E. coli Isolates from Broilers, Turkeys and Calves in Four European Countries

Author(s): Octavio Mesa-Varona, Rodolphe Mader, Martina Velasova, Jean-Yves Madec, Sophie A. Granier, Agnes Perrin-Guyomard, Madelaine Norstrom, Heike Kaspar, Mirjam Grobbel, Eric Jouy, Muna F. Anjum, Bernd-Alois Tenhagen
Published in: Microorganisms, 9/4, 2021, Page(s) 678, ISSN 2076-2607
Publisher: Microorganisms
DOI: 10.3390/microorganisms9040678

Impact of the COVID-19 pandemic on human salmonellosis in the Netherlands

Author(s): Lapo Mughini Gras; Linda Chanamé Pinedo; Roan Pijnacker; Maaike van den Beld; Bven Wit; Kees Veldman; Thijs Bosch; Eelco Franz
Published in: Epidemiology and infection, Volume 149, 2021, ISSN 1198-743X
Publisher: Blackwell Publishing Inc.
DOI: 10.1017/s0950268821002557

Klebsiella pneumoniae carriage in low-income countries: antimicrobial resistance, genomic diversity and risk factors

Author(s): Bich-Tram Huynh, Virginie Passet, Andriniaina Rakotondrasoa, Thierno Diallo, Alexandra Kerleguer, Melanie Hennart, Agathe De Lauzanne, Perlinot Herindrainy, Abdoulaye Seck, Raymond Bercion, Laurence Borand, Maria Pardos de la Gandara, Elisabeth Delarocque-Astagneau, Didier Guillemot, Muriel Vray, Benoit Garin, Jean-Marc Collard, Carla Rodrigues, Sylvain Brisse
Published in: Gut Microbes, 11/5, 2020, Page(s) 1287-1299, ISSN 1949-0976
Publisher: Landes Bioscience
DOI: 10.1080/19490976.2020.1748257

Diversity of mucoid to non-mucoid switch among carbapenemase-producing Klebsiella pneumoniae

Author(s): Adriana Chiarelli, Nicolas Cabanel, Isabelle Rosinski-Chupin, Pengdbamba Dieudonné Zongo, Thierry Naas, Rémy A. Bonnin & Philippe Glaser
Published in: BMC Microbiology, 2020, ISSN 1471-2180
Publisher: BioMed Central
DOI: 10.1186/s12866-020-02007-y

Characterization of Clinical Escherichia coli Strains Producing a Novel Shiga Toxin 2 Subtype in Sweden and Denmark Microorganisms 2021 Bai X Characterization of Clinical Escherichia coli Strains Producing a Novel Shiga Toxin 2 Subtype in Sweden and Denmark.

Author(s): Bia X, Scheutz F, Mellström Dahlgren H, Hedenström I, Jernberg C.
Published in: Microorganisms, 2021, ISSN 2076-2607
Publisher: MPDI
DOI: 10.3390/microorganisms9112374

First Report on the Finding of Listeria mnocytogenes ST121 Strain in a Dolphin Brain

Author(s): Yann Sévellec, Marina Torresi, Benjamin Félix, Féderica Palma, Gabriella Centorotola, Stefano Bilei, Matteo Senese, Giuliana Terracciano, Jean-Charles Leblanc, Francesco Pomilio, Sophie Roussel
Published in: Pathogens, 9/10, 2020, Page(s) 802, ISSN 2076-0817
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pathogens9100802

Myocardial Injury Complicated by Systolic Dysfunction in a COVID-19-Positive Dog

Author(s): (4) Romito, G.; Bertaglia, T.; Bertaglia, L.; Decaro, N.; Uva, A.; Rugna, G.; Moreno, A.; Vincifori, G.; Dondi, F.; Diana, A.; Cipone, M.
Published in: Animals, 2021, ISSN 2076-2615
Publisher: MPDI
DOI: 10.3390/ani11123506

The state of One Health research across disciplines and sectors – a bibliometric analysis

Author(s): Sarah Humboldt-Dachroeden, Olivier Rubin, Snorre Sylvester Frid-Nielsen
Published in: One Health, 10, 2020, Page(s) 100146, ISSN 2352-7714
Publisher: Elsevier BV
DOI: 10.1016/j.onehlt.2020.100146

First Detection of GES-5-Producing Escherichia coli from Livestock—An Increasing Diversity of Carbapenemases Recognized from German Pig Production

Author(s): Alexandra Irrgang, Simon H. Tausch, Natalie Pauly, Mirjam Grobbel, Annemarie Kaesbohrer and Jens A. Hammerl
Published in: Microorganisms, 2020, ISSN 2076-2607
Publisher: Microorganisms
DOI: 10.3390/microorganisms8101593

<p>Monitoring Antimicrobial Resistance and Drug Usage in the Human and Livestock Sector and Foodborne Antimicrobial Resistance in Six European Countries</p>

Author(s): Octavio Mesa Varona, Katerina Chaintarli, Berit Muller-Pebody, Muna F Anjum, Tim Eckmanns, Madelaine Norström, Ides Boone, Bernd-Alois Tenhagen
Published in: Infection and Drug Resistance, Volume 13, 2020, Page(s) 957-993, ISSN 1178-6973
Publisher: Dove Medical Press Ltd
DOI: 10.2147/idr.s237038

Spill-Over from Public Health? First Detection of an OXA-48-Producing Escherichia coli in a German Pig Farm

Author(s): Alexandra Irrgang, Natalie Pauly, Bernd-Alois Tenhagen, Mirjam Grobbel, Annemarie Kaesbohrer, Jens A. Hammerl
Published in: Microorganisms, 8/6, 2020, Page(s) 855, ISSN 2076-2607
Publisher: Microorganisms
DOI: 10.3390/microorganisms8060855

One Health practices across key agencies in Sweden – Uncovering barriers to cooperation, communication and coordination

Author(s): Sarah Humboldt-Dachroeden
Published in: Scandinavian Journal of Public Health, 2021, Page(s) 140349482110244, ISSN 1403-4948
Publisher: SAGE Publications
DOI: 10.1177/14034948211024483

Climatic and topographic tolerance limits of wild boar in Eurasia: implications for their expansion

Author(s): Jaime Bosch, Irene Iglesias, Marta Martínez, Ana De la Torre
Published in: GEOGRAPHY, ENVIRONMENT, SUSTAINABILITY, 13/1, 2020, Page(s) 107-114, ISSN 2542-1565
Publisher: Geography Environment Sustainability
DOI: 10.24057/2071-9388-2019-52

Cost-effectiveness analysis of using probiotics, prebiotics, or synbiotics to control Campylobacter in broilers

Author(s): C.P.A. van Wagenberg, P.L.M. van Horne, M.A.P.M. van Asseldonk
Published in: Poultry Science, 99/8, 2020, Page(s) 4077-4084, ISSN 0032-5791
Publisher: Poultry Science Association Inc.
DOI: 10.1016/j.psj.2020.05.003

Chromosome-Scale Echinococcus Granulosus (Genotype G1) Genome Reveals the Eg95 Gene Family and Conservation of the EG95-Vaccine Molecule.

Author(s): Korhonen, P. K.; Kinkar, L.; Young, N. D.; Cai, H.; Lightowlers, M. W.; Gauci, C.; Jabbar, A.; Chang, B. C. H.; Wang, T.; Hofmann, A.; Koehler, A. V.; Li, J.; Li, J.; Wang, D.; Yin, J.; Yang, H.; Jenkins, D. J.; Saarma, U.; Laurimäe, T.; Rostami-Nejad, M.; Irshadullah, M.; Mirhendi, H.; Sharbatkhori, M.; Ponce-Gordo, F.; Simsek, S.; Casulli, A.; Zait, H.; Atoyan, H.; de la Rue, M. L.; Romig, T.;
Published in: communications biology, 2022, ISSN 2399-3642
Publisher: Springer
DOI: 10.1038/s42003-022-03125-1

Expression of in vivo biotinylated recombinant antigens SAG1 and SAG2A from Toxoplasma gondii for improved seroepidemiological bead-based multiplex assays

Author(s): Sandra Klein, Daniel Stern, Frank Seeber
Published in: BMC Biotechnology, 20/1, 2020, ISSN 1472-6750
Publisher: BioMed Central
DOI: 10.1186/s12896-020-00646-7

Assessing Campylobacter cross-contamination of Danish broiler flocks at slaughterhouses considering true flock prevalence estimates and ad-hoc sampling

Author(s): AlessandroFodda, NaoTakeuchi-StormBirgitte BorckHøgJette SejerKjeldgaardJens KirkAndersenJohanneEllis-Iversen
Published in: Microbial Risk Analysis, Available online 24 March 2022, 100214, 2022, ISSN 2352-3530
Publisher: Elsevier
DOI: 10.1016/j.mran.2022.100214

blaCTX–M–1/IncI1-Iγ Plasmids Circulating in Escherichia coli From Norwegian Broiler Production Are Related, but Distinguishable

Author(s): Solveig Sølverød Mo, Amar Anandrao Telke, Kingsley Oteng Osei, Camilla Sekse, Jannice Schau Slettemeås, Anne Margrete Urdahl, Hanna Karin Ilag, Thongpan Leangapichart, Marianne Sunde
Published in: Frontiers in Microbiology, 11, 2020, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2020.00333

Horsing Around: Escherichia coli ST1250 of Equine Origin Harboring Epidemic IncHI1/ST9 Plasmid with bla CTX-M-1 and an Operon for Short-Chain Fructooligosaccharide Metabolism

Author(s): Adam Valcek, Petra Sismova, Kristina Nesporova, Søren Overballe-Petersen, Ibrahim Bitar, Ivana Jamborova, Arie Kant, Jaroslav Hrabak, Jaap A. Wagenaar, Jean-Yves Madec, Peter Damborg, Engeline van Duijkeren, Christa Ewers, Joost Hordijk, Henrik Hasman, Michael S. M. Brouwer, Monika Dolejska
Published in: Antimicrobial Agents and Chemotherapy, 65/5, 2021, ISSN 0066-4804
Publisher: American Society for Microbiology
DOI: 10.1128/aac.02556-20

Prevalence and antimicrobial resistance of Campylobacter isolated from carcasses of chickens slaughtered in Poland – a retrospective study

Author(s): Kinga Wieczorek, Łukasz Bocian, Jacek Osek
Published in: Food Control, 112, 2020, Page(s) 107159, ISSN 0956-7135
Publisher: Elsevier BV
DOI: 10.1016/j.foodcont.2020.107159

Large diversity of linezolid-resistant isolates discovered in food-producing animals through linezolid selective monitoring in Belgium in 2019

Author(s): Michaël Timmermans, Bert Bogaerts, Kevin Vanneste, Sigrid C J De Keersmaecker, Nancy H C Roosens, Carole Kowalewicz, Guillaume Simon, Maria A Argudín, Ariane Deplano, Marie Hallin, Pierre Wattiau, David Fretin, Olivier Denis, Cécile Boland
Published in: Journal of Antimicrobial Chemotherapy, 2021, ISSN 0305-7453
Publisher: Oxford University Press
DOI: 10.1093/jac/dkab376

The Use of Flocked Swabs with a Protective Medium Increases the Recovery of Live Brucella Spp. and DNA Detection

Author(s): Claire Ponsart
Published in: Microbiology Spectrum, Vol. 9 n°3, 2021, ISSN 2165-0497
Publisher: Microbiology Spectrum
DOI: 10.1128/spectrum.00728-21

Whole genome sequencing reveals resemblance between ESBL-producing and carbapenem resistant Klebsiella pneumoniae isolates from Austrian rivers and clinical isolates from hospitals

Author(s): Sarah Lepuschitz, Simone Schill, Anna Stoeger, Shiva Pekard-Amenitsch, Steliana Huhulescu, Norbert Inreiter, Rainer Hartl, Heidrun Kerschner, Sieglinde Sorschag, Burkhard Springer, Sylvain Brisse, Franz Allerberger, Robert L. Mach, Werner Ruppitsch
Published in: Science of The Total Environment, 662, 2019, Page(s) 227-235, ISSN 0048-9697
Publisher: Elsevier BV
DOI: 10.1016/j.scitotenv.2019.01.179

Extensive antimicrobial resistance mobilization via multicopy plasmid encapsidation mediated by temperate phages

Author(s): Lorena Rodríguez-Rubio, Carlos Serna, Manuel Ares-Arroyo, Bosco R Matamoros, Jose F Delgado-Blas, Natalia Montero, Cristina Bernabe-Balas, Emilia F Wedel, Irene S Mendez, Maite Muniesa, Bruno Gonzalez-Zorn
Published in: Journal of Antimicrobial Chemotherapy, 2020, ISSN 0305-7453
Publisher: Oxford University Press
DOI: 10.1093/jac/dkaa311

Molecular Methods for the Detection of Toxoplasma gondii Oocysts in Fresh Produce: An Extensive Review

Author(s): Iva Slana, Nadja Bier, Barbora Bartosova, Gianluca Marucci, Alessia Possenti, Anne Mayer-Scholl, Pikka Jokelainen, Marco Lalle
Published in: Microorganisms, 9/1, 2021, Page(s) 167, ISSN 2076-2607
Publisher: Microorganisms
DOI: 10.3390/microorganisms9010167

A shotgun metagenomics approach to detect and characterize unauthorized genetically modified microorganisms in microbial fermentation products

Author(s): Buytaers, Florence E.; Fraiture, Marie-Alice; Berbers, Bas; Vandermassen, Els Transversal Activities in Applied Genomics, Sciensano, Brussels, Belgium ; Hoffman, Stefan; Papazova, Nina; Vanneste, Kevin; Marchal, Kathleen; Roosens, Nancy H.C.; De Keersmaecker, Sigrid C.J.
Published in: Food Chemistry: Molecular Sciences, 2021, ISSN 2666-5662
Publisher: Food Chemistry: Molecular Sciences
DOI: 10.1016/j.fochms.2021.100023

Gut microbiota composition before infection determines the Salmonella super‐ and low‐shedder phenotypes in chicken

Author(s): Florent Kempf, Pierrette Menanteau, Ivan Rychlik, Tereza Kubasová, Jérôme Trotereau, Isabelle Virlogeux‐Payant, Samantha Schaeffer, Catherine Schouler, Rosanna Drumo, Edouard Guitton, Philippe Velge
Published in: Microbial Biotechnology, 13/5, 2020, Page(s) 1611-1630, ISSN 1751-7915
Publisher: Microbial biotechnology
DOI: 10.1111/1751-7915.13621

Spatial Trends in Salmonella Infection in Pigs in Spain

Author(s): Kendy Tzu-yun Teng, Marta Martinez Avilés, Maria Ugarte-Ruiz, Carmen Barcena, Ana de la Torre, Gema Lopez, Miguel A. Moreno, Lucas Dominguez, Julio Alvarez
Published in: Frontiers in Veterinary Science, 7, 2020, ISSN 2297-1769
Publisher: Frontiers in Veterinary Science
DOI: 10.3389/fvets.2020.00345

Prediction of antimicrobial resistance in clinical Campylobacter jejuni isolates from whole-genome sequencing data

Author(s): Louise Gade Dahl, Katrine Grimstrup Joensen, Mark Thomas Østerlund, Kristoffer Kiil, Eva Møller Nielsen
Published in: European Journal of Clinical Microbiology & Infectious Diseases, 2020, ISSN 0934-9723
Publisher: Springer Verlag
DOI: 10.1007/s10096-020-04043-y

Identifying emerging trends in antimicrobial resistance using Salmonella surveillance data in poultry in Spain

Author(s): Julio Alvarez, Gema Lopez, Petra Muellner, Cristina Frutos, Christina Ahlstrom, Tania Serrano, Miguel A. Moreno, Manuel Duran, Jose Luis Saez, Lucas Dominguez, Maria Ugarte‐Ruiz
Published in: Transboundary and Emerging Diseases, 67/1, 2019, Page(s) 250-262, ISSN 1865-1674
Publisher: Blackwell-Wiss.-Verl
DOI: 10.1111/tbed.13346

Detection of Norovirus Variant GII.4 Hong Kong in Asia and Europe, 2017−2019

Author(s): Martin Chi-Wai Chan, Sunando Roy, Joseph Bonifacio, Lin-Yao Zhang, Preeti Chhabra, Jenny C.M. Chan, Cristina Celma, Mary Ann Igoy, Sin-Leung Lau, Kirran N. Mohammad, Jan Vinjé, Harry Vennema, Judith Breuer, Marion Koopmans, Miranda de Graaf
Published in: Emerging Infectious Diseases, 27/1, 2021, Page(s) 289-293, ISSN 1080-6040
Publisher: US National Center for Infectious Diseases
DOI: 10.3201/eid2701.203351

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