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Enabling Precision Immuno-oncology in Colorectal cancer

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Publications

Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data

Author(s): Francesca Finotello, Clemens Mayer, Christina Plattner, Gerhard Laschober, Dietmar Rieder, Hubert Hackl, Anne Krogsdam, Zuzana Loncova, Wilfried Posch, Doris Wilflingseder, Sieghart Sopper, Marieke Ijsselsteijn, Thomas P. Brouwer, Douglas Johnson, Yaomin Xu, Yu Wang, Melinda E. Sanders, Monica V. Estrada, Paula Ericsson-Gonzalez, Pornpimol Charoentong, Justin Balko, Noel Filipe da Cunha Carvalho d
Published in: Genome Medicine, Issue 11/1, 2019, ISSN 1756-994X
DOI: 10.1186/s13073-019-0638-6

CD39 Identifies the CD4 + Tumor-Specific T-cell Population in Human Cancer

Author(s): Kim E. Kortekaas, Saskia J. Santegoets, Gregor Sturm, Ilina Ehsan, Sylvia L. van Egmond, Francesca Finotello, Zlatko Trajanoski, Marij J.P. Welters, Mariette I.E. van Poelgeest, Sjoerd H. van der Burg
Published in: Cancer Immunology Research, Issue 8/10, 2020, Page(s) 1311-1321, ISSN 2326-6066
DOI: 10.1158/2326-6066.cir-20-0270

Scirpy: a Scanpy extension for analyzing single-cell T-cell receptor-sequencing data

Author(s): Gregor Sturm, Tamas Szabo, Georgios Fotakis, Marlene Haider, Dietmar Rieder, Zlatko Trajanoski, Francesca Finotello
Published in: Bioinformatics, Issue 36/18, 2020, Page(s) 4817-4818, ISSN 1367-4803
DOI: 10.1093/bioinformatics/btaa611

NeoFuse: predicting fusion neoantigens from RNA sequencing data

Author(s): Georgios Fotakis, Dietmar Rieder, Marlene Haider, Zlatko Trajanoski, Francesca Finotello
Published in: Bioinformatics, Issue 36/7, 2019, Page(s) 2260-2261, ISSN 1367-4803
DOI: 10.1093/bioinformatics/btz879

Next-generation computational tools for interrogating cancer immunity

Author(s): Francesca Finotello, Dietmar Rieder, Hubert Hackl, Zlatko Trajanoski
Published in: Nature Reviews Genetics, Issue 20/12, 2019, Page(s) 724-746, ISSN 1471-0056
DOI: 10.1038/s41576-019-0166-7

Guadecitabine plus ipilimumab in unresectable melanoma: the NIBIT-M4 clinical trial

Author(s): Anna Maria Di Giacomo, Alessia Covre, Francesca Finotello, Dietmar Rieder, Riccardo Danielli, Luca Sigalotti, Diana Giannarelli, Florent Petiprez, Laetitia Lacroix, Monica Valente, Ornella Cutaia, Carolina Fazio, Giovanni Amato, Andrea Lazzeri, Santa Monterisi, Clelia Miracco, Sandra Coral, Andrea Anichini, Christoph Bock, Amelie Nemc, Aram Oganesian, James N Lowder, Mohammad Azab, Wolf H. Fridman
Published in: Clinical Cancer Research, 2019, Page(s) clincanres.1335.2019, ISSN 1078-0432
DOI: 10.1158/1078-0432.ccr-19-1335

Advancing cancer immunotherapy: a vision for the field

Author(s): Noel F. C. C. de Miranda, Zlatko Trajanoski
Published in: Genome Medicine, Issue 11/1, 2019, ISSN 1756-994X
DOI: 10.1186/s13073-019-0662-6