Coupling dynamic population immunity profiles and host behaviours to arboviral spread

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

SARS-CoV-2 transmission across age groups in France and implications for control

Author(s): Cécile Tran Kiem, Paolo Bosetti, Juliette Paireau, Pascal Crépey, Henrik Salje, Noémie Lefrancq, Arnaud Fontanet, Daniel Benamouzig, Pierre-Yves Boëlle, Jean-Claude Desenclos, Lulla Opatowski, Simon Cauchemez
Published in: Nature Communications, 2021, ISSN 2041-1723
Publisher: Nature Publishing Group

Integration of population-level data sources into an individual-level clinical prediction model for dengue virus test positivity

Author(s): RJ Williams, Ben J Brintz, Gabriel Ribeiro dos Santos, Angkana T Huang, Buddhari Darunee, Surachai Kaewhiran, Sopon Iamsirithaworn, Alan Rothman, Stephen J Thomas, Aaron Farmer, Stefan Fernandez, Derek AT Cummings, Kathyrn Anderson, and Henrik Salje, Daniel Leung
Published in: Science Advances, 2024, ISSN 2375-2548
Publisher: American Association for the Advancement of Science

Geographic migration and vaccine-induced fitness changes of Streptococcus pneumoniae

Author(s): Sophie Belman, Noémie Lefrancq, Susan A Nzenze, Sarah L Downs, Mignon du Plessis, Stephanie W Lo, Global Pneumococcal Sequencing Consortium, Lesley Mcgee, Shabir A Madhi, Anne von Gottberg, Stephen D Bentley, Henrik Salje
Published in: Nature, 2024, ISSN 0028-0836
Publisher: Nature Publishing Group

Monitoring the proportion infected by SARS-CoV-2 from age-stratified hospitalisation and serological data

Author(s): Nathanael Hoze, Juliette Paireau, Nathanael Lapidus, Cecile Tran Kiem, Henrik Salje, Gianluca Severi, Mathilde Touvier, Marie Zins, Xavier de Lamballerie, Daniel Levy-Bruhl, Fabrice Carrat, Simon Cauchemez
Published in: Lancet Public Health, 2021, ISSN 2468-2667
Publisher: London: Elsevier Ltd

Lockdown as a last resort option in case of COVID-19 epidemic rebound: a modelling study

Author(s): Cécile Tran Kiem, Pascal Crépey, Paolo Bosetti, Daniel Levy Bruhl, Yazdan Yazdanpanah, Henrik Salje, Pierre-Yves Boëlle, Simon Cauchemez
Published in: Eurosurveillance, 2021, ISSN 1560-7917
Publisher: European Centre for Disease Prevention and Control

RSero: A user-friendly R package to reconstruct pathogen circulation history from seroprevalence studies

Author(s): Nathanaël Hozé, Margarita Pons-Salort, Jessica E. Metcalf, Michael White, Henrik Salje, Simon Cauchemez
Published in: PLoS Comp Bio, 2025, ISSN 1553-7358
Publisher: PLoS

Antigenic evolution of dengue viruses over 20 years.

Author(s): Leah C. Katzelnick; Leah C. Katzelnick; Ana Coello Escoto; Ana Coello Escoto; Angkana T. Huang; Bernardo García-Carreras; Nayeem Chowdhury; Irina Maljkovic Berry; Chris Chavez; Philippe Buchy; Veasna Duong; Philippe Dussart; Gregory D. Gromowski; Louis R. Macareo; Butsaya Thaisomboonsuk; Stefan Fernandez; Derek J. Smith; Richard G. Jarman; Stephen S. Whitehead; Henrik Salje; Henrik Salje; Derek A
Published in: Science, Issue 1, 2021, ISSN 0036-8075
Publisher: American Association for the Advancement of Science
DOI: 10.1126/science.abk0058

Reconstruction of Transmission Pairs for Novel Coronavirus Disease 2019 (COVID-19) in Mainland China: Estimation of Superspreading Events, Serial Interval, and Hazard of Infection

Author(s): Xu, Xiao-Ke; Liu, Xiao Fan; Wu, Ye; Ali, Sheikh Taslim; Du, Zhanwei; Bosetti, Paolo; Lau, Eric H Y; Cowling, Benjamin J; Wang, Lin
Published in: Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America, Issue 1, 2021, ISSN 1058-4838
Publisher: University of Chicago Press

Evaluating the impact of curfews and other measures on SARS-CoV-2 transmission in French Guiana

Author(s): Alessio Andronico, Cécile Tran Kiem, Juliette Paireau, Tiphanie Succo, Paolo Bosetti, Noémie Lefrancq, Mathieu Nacher, Félix Djossou, Alice Sanna, Claude Flamand, Henrik Salje, Cyril Rousseau, Simon Cauchemez
Published in: Nature Communications, 2021, ISSN 2041-1723
Publisher: Nature Publishing Group

Serial interval of SARS-CoV-2 was shortened over time by nonpharmaceutical interventions

Author(s): Sheikh Taslim Ali, Lin Wang, Eric H. Y. Lau, Xiao-Ke Xu, Zhanwei Du, Ye Wu, Gabriel M. Leung, Benjamin J. Cowling
Published in: Science, Issue 369/6507, 2020, Page(s) 1106-1109, ISSN 0036-8075
Publisher: American Association for the Advancement of Science
DOI: 10.1126/science.abc9004

Reconstructing Mayaro virus circulation in French Guiana shows frequent spillovers

Author(s): Nathanaël Hozé, Henrik Salje, Dominique Rousset, Camille Fritzell, Jessica Vanhomwegen, Sarah Bailly, Matthieu Najm, Antoine Enfissi, Jean-Claude Manuguerra, Claude Flamand, Simon Cauchemez
Published in: Nature Communications, 2020, ISSN 2041-1723
Publisher: Nature Publishing Group

Cost-effective proactive testing strategies during COVID-19 mass vaccination: A modelling study

Author(s): Zhanwei Du; Lin Wang; Yuan Bai; Xutong Wang; Abhishek Pandey; Meagan C. Fitzpatrick; Matteo Chinazzi; Ana Pastore y Piontti; Nathaniel Hupert; Michael Lachmann; Alessandro Vespignani; Alison P. Galvani; Benjamin J. Cowling; Lauren Ancel Meyers
Published in: Lancet Regional Health. Americas, Issue 2667193X, 2021, ISSN 2667-193X
Publisher: Elsevier
DOI: 10.1016/j.lana.2021.100182

How modelling can help steer the course set by the World Health Organization 2021-2030 roadmap on neglected tropical diseases

Author(s): Jessica Clark, Wilma A Stolk, María-Gloria Basáñez, Luc E Coffeng, Zulma M Cucunubá, Matthew A Dixon, Louise Dyson, Katie Hampson, Michael Marks, Graham F Medley, Timothy M Pollington, Joaquin M Prada, Kat S Rock, Henrik Salje, Jaspreet Toor, T Déirdre Hollingsworth
Published in: Gates Open Research, 2021, ISSN 2572-4754
Publisher: Bill & Melinda Gates Foundation

Opportunities for improved surveillance and control of dengue from age-specific case data

Author(s): Isabel Rodriguez-Barraquer, Henrik Salje, Derek A Cummings
Published in: eLife, Issue 8, 2019, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.7554/elife.45474

Estimating the impact of the wMel release program on dengue and chikungunya incidence in Rio de Janeiro, Brazil

Author(s): Gabriel Ribeiro dos Santos, Betina Durovni, Valeria Saraceni, Souza Riback Thais Irene, Sofia B Pinto, Katherine L Anders, Luciano A Moreira, Henrik Salje
Published in: Lancet Infectious Diseases, Issue 14733099, 2022, ISSN 1473-3099
Publisher: The Lancet Publishing Group
DOI: 10.1016/s1473-3099(22)00436-4

Building an integrated serosurveillance platform to inform public health interventions: Insights from an experts’ meeting on serum biomarkers

Author(s): Kirsten E Wiens, Barbara Jauregui, Benjamin F Arnold, Kathryn Banke, Djibril Wade, Kyla Hayford, Adriana Costero-Saint Denis, Robert H Hall, Henrik Salje, Isabel Rodriguez-Barraquer, Andrew S Azman, Guy Vernet, Daniel T Leung, Collaboration on Integrated Biomarkers Surveillance
Published in: PLoS neglected tropical diseases, 2022, ISSN 1935-2727
Publisher: Public Library of Science
DOI: 10.1371/journal.pntd.0010657

Spatial distribution and burden of emerging arboviruses in French Guiana

Author(s): Sarah Bailly, Dominique Rousset, Camille Fritzell, Nathanaël Hozé, Sarrah Ben Achour, Léna Berthelot, Antoine Enfissi, Jessica Vanhomwegen, Henrik Salje, Sandrine Fernandes-Pellerin, Mona Saout, Anne Lavergne, Jean-Claude Manuguerra, Jean-François Carod, Felix Djossou, Simon Cauchemez, Claude Flamand
Published in: Viruses, 2021, ISSN 1999-4915
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)

Protective Role of NS1-Specific Antibodies in the Immune Response to Dengue Virus through Antibody-Dependent Cellular Cytotoxicity

Author(s): Luis A Sanchez-Vargas, Anuja Mathew, Henrik Salje, David Sousa, Nicole A Casale, Aaron Farmer, Darunee Buddhari, Kathryn Anderson, Sopon Iamsirithaworn, Surachai Kaewhiran, Heather Friberg, Jeffrey R Currier, Alan L Rothman
Published in: Journal of Infectious Diseases, 2024, ISSN 0022-1899
Publisher: University of Chicago Press

The genetic diversity of Nipah virus across spatial scales

Author(s): Oscar Cortés Azuero, Noemie Lefrancq, Birgit Nikolay, Clifton McKee, Julien Cappelle, Vibol Hul, Tey Putita Ou, Thavry Hoem, Philippe Lemey, Mohammed Ziaur Rahman, Ausraful Islam, Emily S Gurley, Veasna Duong, and Henrik Salje
Published in: Journal of Infectious Disease, 2024, ISSN 0022-1899
Publisher: University of Chicago Press

Comparing the age and sex trajectories of SARS-CoV-2 morbidity and mortality with other respiratory pathogens

Author(s): C Jessica E Metcalf, Juliette Paireau, Megan O'Driscoll, Mathilde Pivette, Bruno Hubert, Isabelle Pontais, Sema Nickbakhsh, Derek AT Cummings, Simon Cauchemez, Henrik Salje
Published in: Royal Society Open Science, Issue 20545703, 2022, ISSN 2054-5703
Publisher: Royal Society
DOI: 10.1098/rsos.211498

Reconciling heterogeneous dengue virus infection risk estimates from different study designs

Author(s): Angkana T. Huang, Darunee Buddhari, Surachai Kaewhiran, Sopon Iamsirithaworn, Direk Khampaen, Aaron Farmer, Stefan Fernandez, Stephen J. Thomas, Isabel Rodriguez-Barraquer, Taweewun Hunsawong, Anon Srikiatkhachorn, Gabriel Ribeiro dos Santos, Megan O’Driscoll, Marco Hamins-Puertolas, Timothy Endy, Alan L. Rothman, Derek A. T. Cummings, Kathryn Anderson, and Henrik Salje
Published in: PNAS, 2025, ISSN 0027-8424
Publisher: National Academy of Sciences

Antigenic distance between primary and secondary dengue infections correlates with disease risk

Author(s): Lin Wang, Angkana Huang, Leah Katzelnick, Noémie Lefrancq, Ana Coello Escoto, Loréna Duret, Nayeem Chowdhury, Richard Jarman, Matthew Conte, Irina Berry, Stefan Fernandez, Chonticha Klungthong, Butsaya Thaisomboonsuk, Piyarat Suntarattiwong, Warunee Vandepitte, Stephen Whitehead, Simon Cauchemez, Derek Cummings, and Henrik Salje
Published in: Science Translational Medicine, 2024, ISSN 1946-6234
Publisher: American Association for the Advancement of Science

Comparing the Performance of Three Models Incorporating Weather Data to Forecast Dengue Epidemics in Reunion Island, 2018-2019

Author(s): Andronico A, Menudier L, Salje H, Vincent M, Paireau J, de Valk H, Gallian P, Pastorino B, Brady O, de Lamballerie X, Lazarus C, Paty MC, Vilain P, Noel H, Cauchemez S
Published in: Journal of Infectious Diseases, 2024, ISSN 0022-1899
Publisher: University of Chicago Press

A systematic review of antibody mediated immunity to coronaviruses: antibody kinetics, correlates of protection, and association of antibody responses with severity of disease

Author(s): Huang, A. T., Garcia-Carreras, B., Hitchings, M. D. T., Yang, B., Katzelnick, L. C., Rattigan, S. M., Borgert, B. A., Moreno, C. A., Solomon, B. D., Rodriguez-Barraquer, I., Lessler, J., Salje, H., Burke, D., Wesolowski, A. & Cummings, D. A. T
Published in: Nature Communications, 2020, ISSN 2041-1723
Publisher: Nature Publishing Group

Why the growth of arboviral diseases necessitates a new generation of global risk maps and future projections

Author(s): Oliver J Brady, Leonardo S Bastos, Jamie M. Caldwell, Simon Cauchemez, Hannah E Clapham, Illaria Dorigatti, Katy A M Gaythorpe, Wenbiao Hu, Laith Hussain-Alkhateeb, Michael A Johansson, Ahyoung Lim, Velma Lopez, Richard James Maude, Jane P Messina, Erin A. Mordecai, A Townsend Peterson, Isabel Rodriquez-Barraquer, Ingrid B. Rabe, Diana P. Rojas, Sadie J. Ryan, Henrik Salje, Jan C Semenza, Quan Min
Published in: PLoS Comp Bio, 2025, ISSN 1553-7358
Publisher: PLoS

Maternally-derived antibody titer dynamics and risk of hospitalised infant dengue disease

Author(s): Megan O’Driscoll, Darunee Buddhari, Angkana Huang, Adam Waikman, Surachai Kaewhirun, Sopon Iamsirithaworn, Direk Khampaen, Aaron Farmer, Stefan Fernandez, Isabel Rodriguez-Barraquer, Anon Srikiatkhachorn, Stephen Thomas, Timothy Endy, Alan L. Rothman, Kathryn Anderson, Derek A.T. Cummings, and Henrik Salje
Published in: Proceedings of the National Academy of Sciences, 2023, ISSN 0027-8424
Publisher: National Academy of Sciences

Dynamics of measles immunity from birth and following vaccination

Author(s): Wei Wang, Megan O’Driscoll, Qianli Wang, Sihong Zhao, Henrik Salje
Published in: Nature Microbiology, 2024, ISSN 2058-5276
Publisher: Nature Portfolio

Beneath the surface: Amino acid variation underlying two decades of dengue virus antigenic dynamics in Bangkok, Thailand

Author(s): Angkana T Huang, Henrik Salje, Ana Coello Escoto, Nayeem Chowdhury, Christian Chávez, Bernardo Garcia-Carreras, Wiriya Rutvisuttinunt, Irina Maljkovic Berry, Gregory D Gromowski, Lin Wang, Chonticha Klungthong, Butsaya Thaisomboonsuk, Ananda Nisalak, Luke M Trimmer-Smith, Isabel Rodriguez-Barraquer, Damon W Ellison, Anthony R Jones, Stefan Fernandez, Stephen J Thomas, Derek J Smith, Richard Jarma
Published in: PLoS Pathogens, 2022, ISSN 1553-7366
Publisher: Public Library of Science
DOI: 10.1371/journal.ppat.1010500

Global spatial dynamics and vaccine-induced fitness changes of Bordetella pertussis

Author(s): Noémie Lefrancq, Valérie Bouchez, Nadia Fernandes, Alex-Mikael Barkoff, Thijs Bosch, Tine Dalby, Thomas Åkerlund, Jessica Darenberg, Katerina Fabianova, Didrik F. Vestrheim, Norman K. Fry, Juan José González-López, Karolina Gullsby, Adele Habington, Qiushui He, David Litt, Helena Martini, Denis Piérard, Paola Stefanelli, Marc Stegger, Jana Zavadilova, Nathalie Armatys, Annie Landier, Sophie
Published in: Science Translational Medicine, 2022, ISSN 1946-6234
Publisher: American Association for the Advancement of Science

Assessing the role of multiple mechanisms increasing the age of dengue cases in Thailand

Author(s): Angkana T Huang, Saki Takahashi, Henrik Salje, Lin Wang, Bernardo Garcia-Carreras, Kathryn Anderson, Timothy Endy, Stephen Thomas, Alan L Rothman, Chonticha Klungthong, Anthony R Jones, Stefan Fernandez, Sopon Iamsirithaworn, Pawinee Doung-Ngern, Isabel Rodriguez-Barraquer, Derek AT Cummings
Published in: PNAS, Issue 10916490, 2022, ISSN 1091-6490
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.2115790119

Chikungunya seroprevalence, force of infection, and prevalence of chronic disability after infection in endemic and epidemic settings: a systematic review, meta-analysis, and modelling study

Author(s): Hyolim Kang, Megan Auzenbergs, Hannah Clapham, Clara Maure, Jong-Hoon Kim, Henrik Salje, Christopher G Taylor, Ahyoung Lim, Andrew Clark, W John Edmunds, Sushant Sahastrabuddhe, Oliver J Brady, Kaja Abbas
Published in: Lancet Infectious Diseases, 2024, ISSN 1473-3099
Publisher: The Lancet Publishing Group

A systematic review of the data, methods and environmental covariates used to map Aedes-borne arbovirus transmission risk

Author(s): Ah-Young Lim, Yalda Jafari, Jamie M Caldwell, Hannah E Clapham, Katy AM Gaythorpe, Laith Hussain-Alkhateeb, Michael A Johansson, Moritz UG Kraemer, Richard J Maude, Clare P McCormack, Jane P Messina, Erin A Mordecai, Ingrid B Rabe, Robert C Reiner, Sadie J Ryan, Henrik Salje, Jan C Semenza, Diana P Rojas, Oliver J Brady
Published in: BMC Infectious Diseases, 2023, ISSN 1471-2334
Publisher: BioMed Central

Evolution of outcomes for patients hospitalised during the first 9 months of the SARS-CoV-2 pandemic in France: A retrospective national surveillance data analysis

Author(s): Noémie Lefrancq, Juliette Paireau, Nathanaël Hozé, Noémie Courtejoie, Yazdan Yazdanpanah, Lila Bouadma, Pierre-Yves Boëlle, Fanny Chereau, Henrik Salje, Simon Cauchemez
Published in: The Lancet Regional Health - Europe, Issue 5, 2021, Page(s) 100087, ISSN 2666-7762
Publisher: Lancet
DOI: 10.1016/j.lanepe.2021.100087

Evaluation of the extended efficacy of the Dengvaxia vaccine against symptomatic and subclinical dengue infection

Author(s): Henrik Salje, Maria Theresa Alera, Mary Noreen Chua, Taweewun Hunsawong, Damon Ellison, Anon Srikiatkhachorn, Richard G. Jarman, Gregory D. Gromowski, Isabel Rodriguez-Barraquer, Simon Cauchemez, Derek A. T. Cummings, Louis Macareo, In-Kyu Yoon, Stefan Fernandez, Alan L. Rothman
Published in: Nature Medicine, 2021, ISSN 1078-8956
Publisher: Nature Publishing Group
DOI: 10.1038/s41591-021-01392-9

Long-term circulation of Zika virus in Thailand: an observational study

Author(s): Kriangsak Ruchusatsawat, Pattara Wongjaroen, Arisara Posanacharoen, Isabel Rodriguez-Barraquer, Somchai Sangkitporn, Derek A T Cummings, Henrik Salje
Published in: The Lancet Infectious Diseases, Issue 19/4, 2019, Page(s) 439-446, ISSN 1473-3099
Publisher: The Lancet Publishing Group
DOI: 10.1016/s1473-3099(18)30718-7

Seroepidemiological reconstruction of long-term chikungunya virus circulation in Burkina Faso and Gabon

Author(s): Jacqueline Kyungah Lim, Valery Ridde, Selidji Todagbe Agnandji, Bertrand Lell, Seydou Yaro, Jae Seung Yang, Damien Hoinard, Scott Weaver, Jessica Vanhomwegen, Henrik Salje, In Kyu Yoon
Published in: Journal of Infectious Diseases, 2023, ISSN 0022-1899
Publisher: University of Chicago Press

Periodic synchronisation of dengue epidemics in Thailand over the last 5 decades driven by temperature and immunity

Author(s): Bernardo García-Carreras, Bingyi Yang, Mary K Grabowski, Lawrence W Sheppard, Angkana T Huang, Henrik Salje, Hannah Eleanor Clapham, Sopon Iamsirithaworn, Pawinee Doung-Ngern, Justin Lessler, Derek AT Cummings
Published in: PLoS Biology, 2022, ISSN 1545-7885
Publisher: PLoS
DOI: 10.1371/journal.pbio.3001160

How do i bite thee? let me count the ways: Exploring the implications of individual biting habits of Aedes aegypti for dengue transmission

Author(s): Rebecca C Christofferson, Helen J Wearing, Erik A Turner, Christine S Walsh, Henrik Salje, Cécile Tran-Kiem, Simon Cauchemez
Published in: PLoS neglected tropical diseases, 2022, ISSN 1935-2727
Publisher: Public Library of Science
DOI: 10.1371/journal.pntd.0010818

Individual, Household, and Community Drivers of Dengue Virus Infection Risk in Kamphaeng Phet Province, Thailand

Author(s): Gabriel Ribeiro Dos Santos, Darunee Buddhari, Sopon Iamsirithaworn, Direk Khampaen, Alongkot Ponlawat, Thanyalak Fansiri, Aaron Farmer, Stefan Fernandez, Stephen Thomas, Isabel Rodriguez Barraquer, Anon Srikiatkhachorn, Angkana T Huang, Derek AT Cummings, Timothy Endy, Alan L Rothman, Henrik Salje, Kathryn B Anderson
Published in: The Journal of infectious diseases, Issue 00221899, 2022, ISSN 0022-1899
Publisher: University of Chicago Press
DOI: 10.1093/infdis/jiac177

Seroepidemiologic Study Designs for Determining SARS-COV-2 Transmission and Immunity

Author(s): Clapham, H., Hay, J., Routledge, I., Takahashi, S., Choisy, M., Cummings, D., Grenfell, B., Metcalf, C. J. E., Mina, M., Barraquer, I. R., Salje, H. & Tam, C. C
Published in: Emerging Infectious Diseases, 2020, ISSN 1080-6040
Publisher: US National Center for Infectious Diseases

Arthralgia resolution rate following chikungunya virus infection.

Author(s): Megan O'Driscoll; Henrik Salje; Aileen Y. Chang; Hugh Watson
Published in: International Journal of Infectious Diseases, Issue 1, 2021, ISSN 1201-9712
Publisher: Elsevier BV
DOI: 10.1016/j.ijid.2021.08.066

Modelling distributions of Aedes aegypti and Aedes albopictus using climate, host density and interspecies competition

Author(s): 1. Bingyi Yang, Brooke A Borgert, Barry W Alto, Carl K Boohene, Joe Brew, Kelly Deutsch, James T DeValerio, Rhoel R Dinglasan, Daniel Dixon, Joseph M Faella, Sandra L Fisher-Grainger, Gregory E Glass, Reginald Hayes Jr, David F Hoel, Austin Horton, Agne Janusauskaite, Bill Kellner, Moritz UG Kraemer, Keira J Lucas, Johana Medina, Rachel Morreale, William Petrie, Robert C Reiner Jr, Michael T Riles
Published in: PLoS Neglected Torpical Diseases, 2021, ISSN 1935-2735
Publisher: Public Library of Science

Comparing insights from clinic-based versus community-based outbreak investigations: a case study of chikungunya in Bangladesh

Author(s): Kishor Kumar Paul, Henrik Salje, Muhammad W Rahman, Mahmudur Rahman, Emily S Gurley
Published in: International Journal of Infectious Diseases, 2020, ISSN 1201-9712
Publisher: Elsevier BV

Pre-existing chikungunya virus neutralizing antibodies correlate with risk of symptomatic infection and subclinical seroconversion in a Philippine cohort

Author(s): Yoon, I.-K., Srikiatkhachorn, A., Alera, M. T., Fernandez, S., Cummings, D. A. T. and Salje, H
Published in: International Journal of Infectious Diseases, 2020, ISSN 1201-9712
Publisher: Elsevier BV

Results of a nationally representative seroprevalence survey of chikungunya virus in Bangladesh

Author(s): Sam W Allen, Gabriel Ribeiro dos Santos, Kishor K Paul, Repon Paul, Ziaur Rahman, Mohammad Shafiul Alam, Mahmudur Rahman, Hasan Mohammad Al-Amin, Jessica Vanhomwegen, Taylor Smull, Kyu Han Lee, Emily S Gurley, and Henrik Salje
Published in: Journal of Infectious Diseases, 2024, ISSN 0022-1899
Publisher: University of Chicago Press

Estimating the burden of SARS-CoV-2 in France

Author(s): Henrik Salje, Cécile Tran Kiem, Noémie Lefrancq, Noémie Courtejoie, Paolo Bosetti, Juliette Paireau, Alessio Andronico, Nathanaël Hozé, Jehanne Richet, Claire-Lise Dubost, Yann Le Strat, Justin Lessler, Daniel Levy-Bruhl, Arnaud Fontanet, Lulla Opatowski, Pierre-Yves Boelle, Simon Cauchemez
Published in: Science, Issue 369/6500, 2020, Page(s) 208-211, ISSN 0036-8075
Publisher: American Association for the Advancement of Science
DOI: 10.1126/science.abc3517

Reconstructing long-term dengue virus immunity in French Polynesia

Author(s): Takahiro Nemoto, Maite Aubry, Yoann Teissier, Richard Paul, Van-Mai Cao-Lormeau, Henrik Salje, Simon Cauchemez
Published in: Public Library of Science, Issue 19352727, 2022, ISSN 1935-2727
Publisher: Public Library of Science
DOI: 10.1371/journal.pntd.0010367

Identifying the role of household immunity in driving individual dengue virus infection risk

Author(s): Marco Hamins-Puertolas, Darunee Buddhari, Henrik Salje, Derek AT Cummings, Stefan Fernandez, Aaron Farmer, Surachai Kaewhiran, Direk Khampaen, Sopon Iamsirithaworn, Stephen J Thomas, Timothy P Endy, Anon Srikiatkhachorn, Alan Rothman, Isabel Rodriguez-Barraquer, Kathryn B Anderson
Published in: Nature Microbiology, 2024, ISSN 2058-5276
Publisher: Nature Portfolio

Learning the fitness dynamics of pathogens from phylogenies

Author(s): Noemie Lefrancq, Lorena Duret, Valerie Bouchez, Sylvain Brisse, Julian Parkhill, and Henrik Salje
Published in: Nature, 2025, ISSN 0028-0836
Publisher: Nature Publishing Group

Spatio-temporal dynamics of dengue in Brazil: Seasonal travelling waves and determinants of regional synchrony

Author(s): Mikhail Churakov, Christian J. Villabona-Arenas, Moritz U. G. Kraemer, Henrik Salje, Simon Cauchemez
Published in: PLOS Neglected Tropical Diseases, Issue 13/4, 2019, Page(s) e0007012, ISSN 1935-2735
Publisher: PLoS
DOI: 10.1371/journal.pntd.0007012

Household transmission dynamics of seasonal human coronaviruses

Author(s): Talia M Quandelacy, Matt DT Hitchings, Justin Lessler, Jonathan M Read, Charles Vukotich, Andrew S Azman, Henrik Salje, Shanta Zimmer, Hongjiang Gao, Yenlik Zheteyeva, Amra Uzicanin, Derek AT Cummings
Published in: Journal of Infectious Diseases, Issue 00221899, 2022, ISSN 0022-1899
Publisher: University of Chicago Press
DOI: 10.1093/infdis/jiac436

Age-specific mortality and immunity patterns of SARS-CoV-2

Author(s): Megan O’Driscoll, Gabriel Ribeiro Dos Santos, Lin Wang, Derek A. T. Cummings, Andrew S. Azman, Juliette Paireau, Arnaud Fontanet, Simon Cauchemez, Henrik Salje
Published in: Nature, Issue 590/7844, 2021, Page(s) 140-145, ISSN 0028-0836
Publisher: Nature Publishing Group
DOI: 10.1038/s41586-020-2918-0

Reconstructing unseen transmission events to infer dengue dynamics from viral sequences

Author(s): Henrik Salje, Amy Wesolowski, Tyler S. Brown, Mathew V. Kiang, Irina Maljkovic Berry, Noemie Lefrancq, Stefan Fernandez, Richard G. Jarman, Kriangsak Ruchusatsawat, Sopon Iamsirithaworn, Warunee P. Vandepitte, Piyarat Suntarattiwong, Jonathan M. Read, Chonticha Klungthong, Butsaya Thaisomboonsuk, Kenth Engø-Monsen, Caroline Buckee, Simon Cauchemez, Derek A. T. Cummings
Published in: Nature Communications, Issue 12/1, 2021, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-021-21888-9

Informing an investment case for Japanese encephalitis vaccine introduction in Bangladesh

Author(s): Mariana Perez Duque, Abu Mohd Naser, Kishor K Paul, Mahmudur Rahman, Mohammad Shafiul Alam, Hasan Mohammad Al-Amin, Mohammed Ziaur Rahman, Mohammad Enayet Hossain, Repon C Paul, Stephen P Luby, Simon Cauchemez, Jessica Vanhomwegen, Emily S Gurley, and Henrik Salje
Published in: Science Advances, 2024, ISSN 2375-2548
Publisher: American Association for the Advancement of Science

Long-term persistence of monotypic dengue transmission in small size isolated populations, French Polynesia

Author(s): Teissier, Y., Paul, R., Aubry, M., Rodo, X., Dommar, C., Salje, H., Sakuntabhai, A., Cazelles, B. & Cao-Lormeau, V.-M
Published in: PLoS Neglected Tropical Diseases, 2020, ISSN 1935-2727
Publisher: Public Library of Science

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