Coupling dynamic population immunity profiles and host behaviours to arboviral spread

Publications

Antigenic evolution of dengue viruses over 20 years.

Author(s): Leah C. Katzelnick; Leah C. Katzelnick; Ana Coello Escoto; Ana Coello Escoto; Angkana T. Huang; Bernardo García-Carreras; Nayeem Chowdhury; Irina Maljkovic Berry; Chris Chavez; Philippe Buchy; Veasna Duong; Philippe Dussart; Gregory D. Gromowski; Louis R. Macareo; Butsaya Thaisomboonsuk; Stefan Fernandez; Derek J. Smith; Richard G. Jarman; Stephen S. Whitehead; Henrik Salje; Henrik Salje; Derek A
Published in: Science, Issue 00368075, 2021, ISSN 0036-8075
Publisher: American Association for the Advancement of Science
DOI: 10.1126/science.abk0058

Reconstruction of Transmission Pairs for Novel Coronavirus Disease 2019 (COVID-19) in Mainland China: Estimation of Superspreading Events, Serial Interval, and Hazard of Infection

Author(s): Xu, Xiao-Ke; Liu, Xiao Fan; Wu, Ye; Ali, Sheikh Taslim; Du, Zhanwei; Bosetti, Paolo; Lau, Eric H Y; Cowling, Benjamin J; Wang, Lin
Published in: Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America, Issue 1, 2021, ISSN 1058-4838
Publisher: University of Chicago Press

Serial interval of SARS-CoV-2 was shortened over time by nonpharmaceutical interventions

Author(s): Sheikh Taslim Ali, Lin Wang, Eric H. Y. Lau, Xiao-Ke Xu, Zhanwei Du, Ye Wu, Gabriel M. Leung, Benjamin J. Cowling
Published in: Science, Issue 369/6507, 2020, Page(s) 1106-1109, ISSN 0036-8075
Publisher: American Association for the Advancement of Science
DOI: 10.1126/science.abc9004

Cost-effective proactive testing strategies during COVID-19 mass vaccination: A modelling study

Author(s): Zhanwei Du; Lin Wang; Yuan Bai; Xutong Wang; Abhishek Pandey; Meagan C. Fitzpatrick; Matteo Chinazzi; Ana Pastore y Piontti; Nathaniel Hupert; Michael Lachmann; Alessandro Vespignani; Alison P. Galvani; Benjamin J. Cowling; Lauren Ancel Meyers
Published in: Lancet Regional Health. Americas, Issue 2667193X, 2021, ISSN 2667-193X
Publisher: Elsevier
DOI: 10.1016/j.lana.2021.100182

Opportunities for improved surveillance and control of dengue from age-specific case data

Author(s): Isabel Rodriguez-Barraquer, Henrik Salje, Derek A Cummings
Published in: eLife, Issue 8, 2019, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.7554/elife.45474

Estimating the impact of the wMel release program on dengue and chikungunya incidence in Rio de Janeiro, Brazil

Author(s): Gabriel Ribeiro dos Santos, Betina Durovni, Valeria Saraceni, Souza Riback Thais Irene, Sofia B Pinto, Katherine L Anders, Luciano A Moreira, Henrik Salje
Published in: Lancet Infectious Diseases, Issue 14733099, 2022, ISSN 1473-3099
Publisher: The Lancet Publishing Group
DOI: 10.1016/s1473-3099(22)00436-4

Building an integrated serosurveillance platform to inform public health interventions: Insights from an experts’ meeting on serum biomarkers

Author(s): Kirsten E Wiens, Barbara Jauregui, Benjamin F Arnold, Kathryn Banke, Djibril Wade, Kyla Hayford, Adriana Costero-Saint Denis, Robert H Hall, Henrik Salje, Isabel Rodriguez-Barraquer, Andrew S Azman, Guy Vernet, Daniel T Leung, Collaboration on Integrated Biomarkers Surveillance
Published in: PLoS neglected tropical diseases, Issue 19352727, 2022, ISSN 1935-2727
Publisher: Public Library of Science
DOI: 10.1371/journal.pntd.0010657

Comparing the age and sex trajectories of SARS-CoV-2 morbidity and mortality with other respiratory pathogens

Author(s): C Jessica E Metcalf, Juliette Paireau, Megan O'Driscoll, Mathilde Pivette, Bruno Hubert, Isabelle Pontais, Sema Nickbakhsh, Derek AT Cummings, Simon Cauchemez, Henrik Salje
Published in: Royal Society Open Science, Issue 20545703, 2022, ISSN 2054-5703
Publisher: Royal Society
DOI: 10.1098/rsos.211498

Beneath the surface: Amino acid variation underlying two decades of dengue virus antigenic dynamics in Bangkok, Thailand

Author(s): Angkana T Huang, Henrik Salje, Ana Coello Escoto, Nayeem Chowdhury, Christian Chávez, Bernardo Garcia-Carreras, Wiriya Rutvisuttinunt, Irina Maljkovic Berry, Gregory D Gromowski, Lin Wang, Chonticha Klungthong, Butsaya Thaisomboonsuk, Ananda Nisalak, Luke M Trimmer-Smith, Isabel Rodriguez-Barraquer, Damon W Ellison, Anthony R Jones, Stefan Fernandez, Stephen J Thomas, Derek J Smith, Richard Jarma
Published in: PLoS Pathogens, Issue 15537366, 2022, ISSN 1553-7366
Publisher: Public Library of Science
DOI: 10.1371/journal.ppat.1010500

Assessing the role of multiple mechanisms increasing the age of dengue cases in Thailand

Author(s): Angkana T Huang, Saki Takahashi, Henrik Salje, Lin Wang, Bernardo Garcia-Carreras, Kathryn Anderson, Timothy Endy, Stephen Thomas, Alan L Rothman, Chonticha Klungthong, Anthony R Jones, Stefan Fernandez, Sopon Iamsirithaworn, Pawinee Doung-Ngern, Isabel Rodriguez-Barraquer, Derek AT Cummings
Published in: PNAS, Issue 10916490, 2022, ISSN 1091-6490
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.2115790119

Evolution of outcomes for patients hospitalised during the first 9 months of the SARS-CoV-2 pandemic in France: A retrospective national surveillance data analysis

Author(s): Noémie Lefrancq, Juliette Paireau, Nathanaël Hozé, Noémie Courtejoie, Yazdan Yazdanpanah, Lila Bouadma, Pierre-Yves Boëlle, Fanny Chereau, Henrik Salje, Simon Cauchemez
Published in: The Lancet Regional Health - Europe, Issue 5, 2021, Page(s) 100087, ISSN 2666-7762
Publisher: Lancet
DOI: 10.1016/j.lanepe.2021.100087

Evaluation of the extended efficacy of the Dengvaxia vaccine against symptomatic and subclinical dengue infection

Author(s): Henrik Salje, Maria Theresa Alera, Mary Noreen Chua, Taweewun Hunsawong, Damon Ellison, Anon Srikiatkhachorn, Richard G. Jarman, Gregory D. Gromowski, Isabel Rodriguez-Barraquer, Simon Cauchemez, Derek A. T. Cummings, Louis Macareo, In-Kyu Yoon, Stefan Fernandez, Alan L. Rothman
Published in: Nature Medicine, 2021, ISSN 1078-8956
Publisher: Nature Publishing Group
DOI: 10.1038/s41591-021-01392-9

Long-term circulation of Zika virus in Thailand: an observational study

Author(s): Kriangsak Ruchusatsawat, Pattara Wongjaroen, Arisara Posanacharoen, Isabel Rodriguez-Barraquer, Somchai Sangkitporn, Derek A T Cummings, Henrik Salje
Published in: The Lancet Infectious Diseases, Issue 19/4, 2019, Page(s) 439-446, ISSN 1473-3099
Publisher: The Lancet Publishing Group
DOI: 10.1016/s1473-3099(18)30718-7

Periodic synchronisation of dengue epidemics in Thailand over the last 5 decades driven by temperature and immunity

Author(s): Bernardo García-Carreras, Bingyi Yang, Mary K Grabowski, Lawrence W Sheppard, Angkana T Huang, Henrik Salje, Hannah Eleanor Clapham, Sopon Iamsirithaworn, Pawinee Doung-Ngern, Justin Lessler, Derek AT Cummings
Published in: PLoS Biology, Issue 15457885, 2022, ISSN 1545-7885
Publisher: PLoS
DOI: 10.1371/journal.pbio.3001160

How do i bite thee? let me count the ways: Exploring the implications of individual biting habits of Aedes aegypti for dengue transmission

Author(s): Rebecca C Christofferson, Helen J Wearing, Erik A Turner, Christine S Walsh, Henrik Salje, Cécile Tran-Kiem, Simon Cauchemez
Published in: PLoS neglected tropical diseases, Issue 19352727, 2022, ISSN 1935-2727
Publisher: Public Library of Science
DOI: 10.1371/journal.pntd.0010818

Individual, Household, and Community Drivers of Dengue Virus Infection Risk in Kamphaeng Phet Province, Thailand

Author(s): Gabriel Ribeiro Dos Santos, Darunee Buddhari, Sopon Iamsirithaworn, Direk Khampaen, Alongkot Ponlawat, Thanyalak Fansiri, Aaron Farmer, Stefan Fernandez, Stephen Thomas, Isabel Rodriguez Barraquer, Anon Srikiatkhachorn, Angkana T Huang, Derek AT Cummings, Timothy Endy, Alan L Rothman, Henrik Salje, Kathryn B Anderson
Published in: The Journal of infectious diseases, Issue 00221899, 2022, ISSN 0022-1899
Publisher: University of Chicago Press
DOI: 10.1093/infdis/jiac177

Arthralgia resolution rate following chikungunya virus infection.

Author(s): Megan O'Driscoll; Henrik Salje; Aileen Y. Chang; Hugh Watson
Published in: Megan O'Driscoll , Salje , H , Chang , A Y & Watson , H 2021 , ' Arthralgia resolution rate following chikungunya virus infection ' , International Journal of Infectious Diseases , vol. 112 , pp. 1-7 . https://doi.org/10.1016/j.ijid.2021.08.066, Issue 12019712, 2021, ISSN 1201-9712
Publisher: Elsevier BV
DOI: 10.1016/j.ijid.2021.08.066

Estimating the burden of SARS-CoV-2 in France

Author(s): Henrik Salje, Cécile Tran Kiem, Noémie Lefrancq, Noémie Courtejoie, Paolo Bosetti, Juliette Paireau, Alessio Andronico, Nathanaël Hozé, Jehanne Richet, Claire-Lise Dubost, Yann Le Strat, Justin Lessler, Daniel Levy-Bruhl, Arnaud Fontanet, Lulla Opatowski, Pierre-Yves Boelle, Simon Cauchemez
Published in: Science, Issue 369/6500, 2020, Page(s) 208-211, ISSN 0036-8075
Publisher: American Association for the Advancement of Science
DOI: 10.1126/science.abc3517

Reconstructing long-term dengue virus immunity in French Polynesia

Author(s): Takahiro Nemoto, Maite Aubry, Yoann Teissier, Richard Paul, Van-Mai Cao-Lormeau, Henrik Salje, Simon Cauchemez
Published in: Public Library of Science, Issue 19352727, 2022, ISSN 1935-2727
Publisher: Public Library of Science
DOI: 10.1371/journal.pntd.0010367

Seroepidemiological reconstruction of long-term chikungunya virus circulation in Burkina Faso and Gabon.

Author(s): Jacqueline Kyungah Lim; Valery Ridde; Selidji Todagbe Agnandji; Bertrand Lell; Seydou Yaro; Jae Seung Yang; Damien Hoinard; Scott C Weaver; Jessica Vanhomwegen; Henrik Salje; In Kyu Yoon
Published in: EISSN: 1537-6613, Issue 00221899, 2022, ISSN 0022-1899
Publisher: University of Chicago Press
DOI: 10.17863/cam.85546

Beneath the surface: Amino acid variation underlying two decades of dengue virus antigenic dynamics in Bangkok, Thailand.

Author(s): Angkana T. Huang; Henrik Salje; Ana Coello Escoto; Nayeem Chowdhury; Christian Chávez; Bernardo Garcia-Carreras; Wiriya Rutvisuttinunt; Irina Maljkovic Berry; Gregory D. Gromowski; Lin Wang; Chonticha Klungthong; Butsaya Thaisomboonsuk; Ananda Nisalak; Luke M. Trimmer-Smith; Isabel Rodriguez-Barraquer; Damon W. Ellison; Anthony R. Jones; Stefan Fernandez; Stephen J. Thomas; Derek J. Smith; Richar
Published in: essn: 1553-7374, Issue 15537366, 2022, ISSN 1553-7366
Publisher: Public Library of Science
DOI: 10.17863/cam.84514

Spatio-temporal dynamics of dengue in Brazil: Seasonal travelling waves and determinants of regional synchrony

Author(s): Mikhail Churakov, Christian J. Villabona-Arenas, Moritz U. G. Kraemer, Henrik Salje, Simon Cauchemez
Published in: PLOS Neglected Tropical Diseases, Issue 13/4, 2019, Page(s) e0007012, ISSN 1935-2735
Publisher: PLoS
DOI: 10.1371/journal.pntd.0007012

Household transmission dynamics of seasonal human coronaviruses

Author(s): Talia M Quandelacy, Matt DT Hitchings, Justin Lessler, Jonathan M Read, Charles Vukotich, Andrew S Azman, Henrik Salje, Shanta Zimmer, Hongjiang Gao, Yenlik Zheteyeva, Amra Uzicanin, Derek AT Cummings
Published in: Journal of Infectious Diseases, Issue 00221899, 2022, ISSN 0022-1899
Publisher: University of Chicago Press
DOI: 10.1093/infdis/jiac436

Age-specific mortality and immunity patterns of SARS-CoV-2

Author(s): Megan O’Driscoll, Gabriel Ribeiro Dos Santos, Lin Wang, Derek A. T. Cummings, Andrew S. Azman, Juliette Paireau, Arnaud Fontanet, Simon Cauchemez, Henrik Salje
Published in: Nature, Issue 590/7844, 2021, Page(s) 140-145, ISSN 0028-0836
Publisher: Nature Publishing Group
DOI: 10.1038/s41586-020-2918-0

Reconstructing unseen transmission events to infer dengue dynamics from viral sequences

Author(s): Henrik Salje, Amy Wesolowski, Tyler S. Brown, Mathew V. Kiang, Irina Maljkovic Berry, Noemie Lefrancq, Stefan Fernandez, Richard G. Jarman, Kriangsak Ruchusatsawat, Sopon Iamsirithaworn, Warunee P. Vandepitte, Piyarat Suntarattiwong, Jonathan M. Read, Chonticha Klungthong, Butsaya Thaisomboonsuk, Kenth Engø-Monsen, Caroline Buckee, Simon Cauchemez, Derek A. T. Cummings
Published in: Nature Communications, Issue 12/1, 2021, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-021-21888-9

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