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Controlling mIcRobiomes CircuLations for bEtter food Systems

Publications

Impact of Plastic Debris on the Gut Microbiota of Caretta caretta From Northwestern Adriatic Sea

Author(s): Elena Biagi; Elena Biagi; Margherita Musella; Margherita Musella; Giorgia Palladino; Giorgia Palladino; Valeria Angelini; Sauro Pari; Chiara Roncari; Chiara Roncari; Daniel Scicchitano; Daniel Scicchitano; Simone Rampelli; Silvia Franzellitti; Silvia Franzellitti; Marco Candela; Marco Candela
Published in: Frontiers in Marine Science, Issue 1, 2021, ISSN 2296-7745
Publisher: FRONTIERS MEDIA SA
DOI: 10.3389/fmars.2021.637030

G-Tric: generating three-way synthetic datasets with triclustering solutions.

Author(s): João Lobo; Rui Henriques; Sara C. Madeira
Published in: BMC Bioinformatics, Vol 22, Iss 1, Pp 1-28 (2021), Issue 2, 2021, ISSN 1471-2105
Publisher: BioMed Central
DOI: 10.1186/s12859-020-03925-4

G-Tric: generating three-way synthetic datasets with triclustering solutions.

Author(s): João Lobo; Rui Henriques; Sara C. Madeira
Published in: BMC Bioinformatics, Vol 22, Iss 1, Pp 1-28 (2021), Issue 2, 2021, ISSN 1471-2105
Publisher: BioMed Central
DOI: 10.1186/s12859-020-03925-4

Impact of Marine Aquaculture on the Microbiome Associated with Nearby Holobionts: The Case of Patella caerulea Living in Proximity of Sea Bream Aquaculture Cages

Author(s): Giorgia Palladino; Simone Rampelli; Daniel Scicchitano; Margherita Musella; Grazia Marina Quero; Fiorella Prada; Arianna Mancuso; Anne Mette Seyfarth; Silvia Turroni; Marco Candela; Elena Biagi
Published in: Microorganisms, 2021, ISSN 2076-2607
Publisher: MDPI
DOI: 10.3390/microorganisms9020455

Seasonal Changes in Microbial Communities Associated With the Jewel Anemone Corynactis viridis.

Author(s): Giorgia Palladino; Giorgia Palladino; Elena Biagi; Elena Biagi; Simone Rampelli; Margherita Musella; Margherita Musella; Federica D’Amico; Federica D’Amico; Silvia Turroni; Patrizia Brigidi; Gian Marco Luna; Marco Candela; Marco Candela
Published in: Frontiers in Marine Science, 2021, ISSN 2296-7745
Publisher: Frontiers Media S.A.
DOI: 10.3389/fmars.2021.627585

Host-Associated Bacterial Succession during the Early Embryonic Stages and First Feeding in Farmed Gilthead Sea Bream ( Sparus aurata ).

Author(s): Eleni Nikouli; Alexandra Meziti; Efthimia Antonopoulou; Eleni Mente; Konstantinos Ar. Kormas
Published in: Genes, Vol 10, Iss 7, p 483 (2019), Issue 2, 2019, ISSN 2073-4425
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/genes10070483

Host-Associated Bacterial Succession during the Early Embryonic Stages and First Feeding in Farmed Gilthead Sea Bream ( Sparus aurata ).

Author(s): Eleni Nikouli; Alexandra Meziti; Efthimia Antonopoulou; Eleni Mente; Konstantinos Ar. Kormas
Published in: Genes, Vol 10, Iss 7, p 483 (2019), Issue 2, 2019, ISSN 2073-4425
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/genes10070483

Timely Control of Gastrointestinal Eubiosis: A Strategic Pillar of Pig Health

Author(s): Paolo Trevisi, Diana Luise, Federico Correa and Paolo Bosi
Published in: Microorganisms, Issue 9(2):313, 2021, ISSN 2076-2607
Publisher: MDPI
DOI: 10.3390/microorganisms9020313

Pulp and paper mill sludges decrease soil erodibility.

Author(s): Kimmo Rasa; Taina Pennanen; Krista Peltoniemi; Sannakajsa Velmala; Hannu Fritze; Janne Kaseva; Juuso Joona; Risto Uusitalo
Published in: Journal of Environmental Quality, Issue 2, 2021, Page(s) 172-184, ISSN 0047-2425
Publisher: American Society of Agronomy, Inc.
DOI: 10.1002/jeq2.20170

Impact of Marine Aquaculture on the Microbiome Associated with Nearby Holobionts: The Case of Patella caerulea Living in Proximity of Sea Bream Aquaculture Cages

Author(s): Giorgia Palladino; Simone Rampelli; Daniel Scicchitano; Margherita Musella; Grazia Marina Quero; Fiorella Prada; Arianna Mancuso; Anne Mette Seyfarth; Silvia Turroni; Marco Candela; Elena Biagi
Published in: Microorganisms, 2021, ISSN 2076-2607
Publisher: MDPI
DOI: 10.3390/microorganisms9020455

Tissue-scale microbiota of the Mediterranean mussel (Mytilus galloprovincialis) and its relationship with the environment

Author(s): Margherita Musella, Rasika Wathsala, Teresa Tavella, Simone Rampelli, Monica Barone, Giorgia Palladino, Elena Biagi, Patrizia Brigidi, Silvia Turroni, Silvia Franzellitti, Marco Candela
Published in: Science of The Total Environment, Issue 717, 2020, Page(s) 137209, ISSN 0048-9697
Publisher: Elsevier BV
DOI: 10.1016/j.scitotenv.2020.137209

Nitrogen Fertilizers Shape the Composition and Predicted Functions of the Microbiota of Field-Grown Tomato Plants

Author(s): Federica Caradonia, Domenico Ronga, Marcello Catellani, Cleber Vinícius Giaretta Azevedo, Rodrigo Alegria Terrazas, Senga Robertson-Albertyn, Enrico Francia, Davide Bulgarelli
Published in: Phytobiomes Journal, Issue 3/4, 2019, Page(s) 315-325, ISSN 2471-2906
Publisher: APS Publications
DOI: 10.1094/pbiomes-06-19-0028-r

Composition and biodiversity of soil and root-associated microbiome in Vitis vinifera cultivar Lambrusco distinguish the microbial terroir of the Lambrusco DOC protected designation of origin area on a local scale

Author(s): Nanetti, Enrico;Palladino, Giorgia;Scicchitano, Daniel;Trapella, Giulia;Cinti, Nicolò;Fabbrini, Marco;Cozzi, Alice;Accetta, Giovanni;Tassini, Carlo;Iannaccone, Luigi;Candela, Marco;Rampelli, Simone
Published in: FRONTIERS IN MICROBIOLOGY, 2023, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2023.1108036

Metagenomic shifts in mucus, tissue and skeleton of the coral Balanophyllia europaea living along a natural CO2 gradient

Author(s): Palladino, Giorgia;Caroselli, Erik;Tavella, Teresa;D’Amico, Federica;Prada, Fiorella;Mancuso, Arianna;Franzellitti, Silvia;Rampelli, Simone;Candela, Marco;Goffredo, Stefano;Biagi, Elena
Published in: ISME Communications, 2022, ISSN 2730-6151
Publisher: Springer Nature Limited
DOI: 10.1038/s43705-022-00152-1

Microbiome Research: Open Communication Today, Microbiome Applications in the Future

Author(s): Bettina Schelkle Quentin Galand
Published in: Microorganisms, 2020, ISSN 2076-2607
Publisher: MDPI
DOI: 10.3390/microorganisms8121960

Pulp and paper mill sludges decrease soil erodibility

Author(s): Kimmo Rasa; Taina Pennanen; Krista Peltoniemi; Sannakajsa Velmala; Hannu Fritze; Janne Kaseva; Juuso Joona; Risto Uusitalo
Published in: Journal of Environmental Quality, Issue 2, 2021, Page(s) 172-184, ISSN 0047-2425
Publisher: American Society of Agronomy, Inc.
DOI: 10.1002/jeq2.20170

Plasticity of the Anemonia viridis microbiota in response to different levels of combined anthropogenic and environmental stresses

Author(s): Palladino, G;Rampelli, S;Galia-Camps, C;Scicchitano, D;Trapella, G;Nanetti, E;Angelini, V;Cleo, D;Turroni, S;Corinaldesi, C;Candela, M
Published in: Frontiers in Marine Science, 2022, ISSN 2296-7745
Publisher: FRONTIERS MEDIA SA
DOI: 10.3389/fmars.2022.956899

Exploring clade differentiation of the Faecalibacterium prausnitzii complex

Author(s): Fabbrini, Marco;Candela, Marco;Turroni, Silvia;Brigidi, Patrizia;Rampelli, Simone
Published in: iScience, 2022, ISSN 2589-0042
Publisher: CELL PRESS
DOI: 10.1016/j.isci.2022.105533

A footptrint of plant eco-geographic adaptation on the composition of the barley rhizosphere bacterial microbiota

Author(s): Rodrigo Alegria Terrazas; Katharin Balbirnie-Cumming; Jenny Morris; Pete E. Hedley; Joanne Russell; Eric Paterson; Elizabeth M. Baggs; Eyal Fridman; Davide Bulgarelli
Published in: Scientific Reports, Vol 10, Iss 1, Pp 1-13 (2020), Issue 1, 2020, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-020-69672-x

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