Deliverables Documents, reports (19) Whitepaper on opportunities for increased alignment with other EU infrastructures Whitepaper on opportunities for increased alignment and interoperability between SYNTHESYS and other EU infrastructures Publication providing synthesis of cost-effective + scalable workflows for NH collections DNA sequencing Peerreviewed publication providing synthesis of costeffective and scalable work flows for DNA sequencing NH collections Report from engagement activities with taxonomic facilities in priority regions (non-Europe) Report from engagement activities with taxonomic facilities in priority regions outside Europe Landscape analysis and missing standards handbook Evaluation and assessment of existing landscape Evaluation and assessment of existing landscape, summarising the findings of task 8.1 “Evaluation and assessment of existing landscape” Roadmap for integrated implementation of priority component areas European roadmap for integrated implementation of priority component areas with focal areas for delivery by SYNTHESYS partners and other EU infrastructures Best practice for usage of molecular collections handbook Data use and exploitation of Specimen Data Refinery Data delivery and exploitation of Specimen Data Refinery summarising the use cases for the delivery and exploitation of data generated through the specimen data refinery as part of task 84 Specification and requirements for integration with ELViS Specification and requirements for integration of collections management systems with ELViS Consolidated document on policy topics, related best practices + standards Consolidated document on policy topics related best practices standards Report from engagement with new user communities Whitepaper on partnering with other infrastructures to ensure sustainable delivery of SYNTHESYS+ services Whitepaper on partnering with other infrastructures to ensure sustainable delivery of services offered by SYNTHESYS partners to European research Inventory and Analysis of Dataflows Inventory and analysis of dataflows as part of the ELViS functional specifications Paper on implementation, assessments and sustainability business plan of VA Peer-reviewed paper on the implementation, assessment and sustainability business plan of VA Identifier management for curators A guide of best practices documentation for curatorial staff covering the maintenance of collections with persistent identifiers and documenting best practice in this domain, for example when collections are merged or specimens are deaccessioned. Standards Report (Developing + extending standards in the biodiversity informatics domain) Standards reports progress made on developing and extending standards in the biodiversity informatics domain built from the reports and standards created from meetings funded under task 412 Piloting Access through an AAI infrastructure Results of pilot workflow integrations with ELViS Implementation manual for IIIF and CETAF Identifiers in the NH collections community An implementation manual for IIIF and CETAF Identifiers in the NH collections community Other (1) Joint dashboard of collections assessment tools Open Research Data Pilot (1) Data Management Plan Publications Peer reviewed articles (22) SYNTHESYS+ Virtual Access - Report on the Ideas Call (October to November 2019) Author(s): Helen Hardy, Sandra Knapp, E. Louise Allan, Frederik Berger, Katherine Dixey, Bernadette Döme, Pierre-Yves Gagnier, Jiri Frank, Elspeth Haston, Joachim Holstein, Steffen Kiel, Maria Marschler, Patricia Mergen, Sarah Phillips, Rivka Rabinovich, Begoña Sanchez Chillón, Martin Sorensen, Marco Thines, Maarten Trekels, Robert Vogt, Scott Wilson, Karin Wiltschke-Schrotta Published in: Research Ideas and Outcomes, Issue 6, 2020, ISSN 2367-7163 Publisher: Pensoft DOI: 10.3897/rio.6.e50354 Towards a Roadmap for Advancing the Catalogue of the World’s Natural History Collections Author(s): Donald Hobern; Laurence Livermore; Sarah Vincent; Tim Robertson; Joseph Miller; Quentin Groom; Marie Grosjean Published in: Research Ideas and Outcomes, Issue 7, 2022, ISSN 2367-7163 Publisher: Pensoft DOI: 10.3897/rio.8.e98593 Join the Dots: Adding collection assessment to collection descriptions Author(s): Matt Woodburn, Sarah Vincent, Helen Hardy, Clare Valentine Published in: Biodiversity Information Science and Standards, Issue 3, 2019, ISSN 2535-0897 Publisher: Pensoft DOI: 10.3897/biss.3.37200 Genome skimming reveals novel plastid markers for the molecular identification of illegally logged African timber species Author(s): Maurizio Mascarello, Mario Amalfi, Pieter Asselman, Erik Smets, Olivier J. Hardy, Hans Beeckman, Steven B. Janssens Published in: PLoS ONE, Issue 16: 6, 2021, ISSN 1932-6203 Publisher: Public Library of Science DOI: 10.1371/journal.pone.0251655 A botanical demonstration of the potential of linking data using unique identifiers for people Author(s): Anton Güntsch; Quentin Groom; Marcus Ernst; Jörg Holetschek; Andreas Plank; Dominik Röpert; David Fichtmüller; David Peter Shorthouse; Roger Hyam; Mathias Dillen; Maarten Trekels; Elspeth Haston; Heimo Rainer Published in: PLoS ONE, Issue 4, 2021, ISSN 1932-6203 Publisher: Public Library of Science DOI: 10.1371/journal.pone.0261130 Micro-CT image gallery visually presenting the effects of ocean warming and acidification on marine gastropod shells Author(s): Eva Chatzinikolaou, Kleoniki Keklikoglou, Panagiotis Grigoriou, Christos Arvanitidis Published in: Biodiversity Data Journal, Issue 9, 2021, ISSN 1314-2828 Publisher: Pensoft DOI: 10.3897/bdj.9.e75358 The disambiguation of people names in biological collections Author(s): Quentin Groom; Christian Bräuchler; Robert Cubey; Mathias Dillen; Pieter Huybrechts; Nicole Kearney; Niels Klazenga; Siobhan Leachman; Deborah L Paul; Heather Rogers; Joaquim Santos; David Shorthouse; Alison Vaughan; Sabine von Mering; Elspeth Haston Published in: Biodiversity Data Journal, Issue 10, 2022, ISSN 1314-2828 Publisher: Pensoft DOI: 10.3897/bdj.10.e86089 10 Simple Rules for making a software tool workflow-ready Author(s): Paul Brack; Peter Crowther; Stian Soiland-Reyes; Stuart Owen; Douglas Lowe; Alan R Williams; Quentin Groom; Mathias Dillen; Frederik Coppens; Björn Grüning; Ignacio Eguinoa; Philip Ewels; Carole Goble Published in: PLoS Computational Biology, Issue 22, 2022, ISSN 1553-7358 Publisher: PLOS DOI: 10.1371/journal.pcbi.1009823 Genetic characterization of a group of commercial African timber species: From genomics to barcoding Author(s): Maurizio Mascarello, Olivier Lachenaud, Mario Amalfi, Erik Smets, Olivier J. Hardy, Hans Beeckman, Steven B. Janssens Published in: PLoS ONE, Issue 18: 4, 2023, ISSN 1932-6203 Publisher: Public Library of Science DOI: 10.1371/journal.pone.0284732 Semantically Linking Specimens and Images Author(s): Roger Hyam Published in: Biodiversity Information Science and Standards, Issue 3, 2019, ISSN 2535-0897 Publisher: Pensoft DOI: 10.3897/biss.3.35343 Target capture and genome skimming for plant diversity studies Author(s): Flávia Fonseca Pezzini, Giada Ferrari, Laura L. Forrest, Michelle L. Hart, Kanae Nishii, Catherine A. Kidner Published in: Applications in Plant Sciences, Issue 11: 4, 2023, ISSN 2168-0450 Publisher: The Botanical Society of America DOI: 10.1002/aps3.11537 Landscape Analysis for the Specimen Data Refinery Author(s): Stephanie Walton, Laurence Livermore, Olaf Bánki, Robert Cubey, Robyn Drinkwater, Markus Englund, Carole Goble, Quentin Groom, Christopher Kermorvant, Isabel Rey, Celia Santos, Ben Scott, Alan Williams, Zhengzhe Wu Published in: Research Ideas and Outcomes, Issue 6, 2020, ISSN 2367-7163 Publisher: Pensoft DOI: 10.3897/rio.6.e57602 Collections Digitization and Assessment Dashboard, a Tool for Supporting Informed Decisions Author(s): Ana Casino, Niels Raes, Wouter Addink, Matt Woodburn Published in: Biodiversity Information Science and Standards, Issue 3, 2019, ISSN 2535-0897 Publisher: Pensoft DOI: 10.3897/biss.3.37505 Integrating ABCD and DarwinCore: Toward a better foundation for biodiversity information standards Author(s): Stanley Blum, Katharine Barker, Steven J Baskauf, Walter G. Berendsohn, Pier Luigi Buttigieg, Markus Döring, Gabriele Droege, David Fichtmueller, Falko Glöckler, Anton Güntsch, Robert Guralnick, Jana Hoffmann, Niels Klazenga, James Macklin, Paul J. Morris, Deborah L Paul, Mareike Petersen, Tim Robertson, Joel Sachs, David Shorthouse, Ramona Walls, John Wieczorek, Paula F Zermoglio Published in: Biodiversity Information Science and Standards, Issue 3, 2019, ISSN 2535-0897 Publisher: Pensoft DOI: 10.3897/biss.3.37491 Policies Handbook on Using Molecular Collections Author(s): Astrid de Mestier, Daniel Mulcahy, David J. Harris, Nadja Korotkova, Sarah Long, Eva Häffner, Alan Paton, Edmund K. Schiller, Frederik Leliaert, Jacqueline Mackenzie-Dodds, Tim Fulcher, Gunilla Stahls, Thomas von Rintelen, María P. Martín, Robert Lücking, China Williams, Christopher H. C. Lyal, Anton Güntsch, Heléne Aronsson, Magalie Castelin, Anna Pielach, Peter Poczai, Yolanda Ruiz-León, Published in: Research Ideas and Outcomes, Issue 9, 2023, ISSN 2367-7163 Publisher: Pensoft DOI: 10.3897/rio.9.e102908 People are essential to linking biodiversity data Author(s): Quentin Groom; Anton Güntsch; Pieter Huybrechts; Nicole Kearney; Siobhan Leachman; Nicky Nicolson; Roderic D. M. Page; David Shorthouse; Anne E. Thessen; Elspeth Haston Published in: Database: The Journal of Biological Databases and Curation, Issue 1, 2020, ISSN 1758-0463 Publisher: Oxford University Press DOI: 10.1093/database/baaa072 Access to Natural History Collections – from SYNTHESYS to DiSSCo Author(s): Sandra Knapp, Sarah Vincent, Christos Arvanitidis, Katherine Dixey, Patricia Mergen Published in: Biodiversity Information Science and Standards, Issue 3, 2019, ISSN 2535-0897 Publisher: Pensoft DOI: 10.3897/biss.3.37149 The Specimen Data Refinery: A Canonical Workflow Framework and FAIR Digital Object Approach to Speeding up Digital Mobilisation of Natural History Collections Author(s): Alex Hardisty, Paul Brack, Carole Goble, Laurence Livermore, Ben Scott, Quentin Groom, Stuart Owen, Stian Soiland-Reyes Published in: Data Intelligence, Issue 4: 2, 2022, Page(s) 320-341, ISSN 2641-435X Publisher: MIT Press DOI: 10.1162/dint_a_00134 SYNTHESYS+ Abridged Grant Proposal Author(s): Vincent Smith, Kristina Gorman, Wouter Addink, Christos Arvanitidis, Ana Casino, Katherine Dixey, Gabriele Dröge, Quentin Groom, Elspeth Haston, Donald Hobern, Sandra Knapp, Dimitrios Koureas, Laurence Livermore, Ole Seberg Published in: Research Ideas and Outcomes, Issue 5, 2019, ISSN 2367-7163 Publisher: Pensoft DOI: 10.3897/rio.5.e46404 Biodiversity biobanks: a landscape analysis Author(s): Carolina Corrales, Samantha Luciano, Jonas J. Astrin Published in: Research Ideas and Outcomes, Issue ARPHA Preprints, 2023, ISSN 2367-7163 Publisher: Pensoft DOI: 10.3897/arphapreprints.e103105 Documenting Natural History Collections in GBIF Author(s): Tim Robertson, Marcos Gonzalez, Morten Høfft, Marie Grosjean Published in: Biodiversity Information Science and Standards, Issue 3, 2019, ISSN 2535-0897 Publisher: Pensoft DOI: 10.3897/biss.3.37216 Developing the Protocol Infrastructure for DNA Sequencing Natural History Collections Author(s): Giada Ferrari, Lore Esselens, Michelle L Hart, Steven Janssens, Catherine Kidner, Maurizio Mascarello, Joshua V Peñalba, Flávia Pezzini, Thomas von Rintelen, Gontran Sonet, Carl Vangestel, Massimiliano Virgilio, Peter M Hollingsworth Published in: Biodiversity Data Journal, Issue 11, 2023, ISSN 1314-2836 Publisher: Pensoft DOI: 10.3897/bdj.11.e102317 Other (1) Envisaging a global infrastructure to exploit the potential of digitised collections Author(s): Quentin Groom,Mathias Dillen,Wouter Addink,Arturo H. Ariño,Christian Bölling,Pierre Bonnet,Lorenzo Cecchi,Elizabeth R. Ellwood,Rui Figueira,Pierre-Yves Gagnier,Olwen Grace,Anton Güntsch,Helen Hardy,Pieter Huybrechts,Roger Hyam,Alexis Joly,Isabel Larridon,Vamsi Krishna Kommineni,Laurence Livermore,Ricardo Jorge Lopes,Jeremy Miller,Sofie Meeus,Kenzo Milleville,Marc Pignal,Renato Panda,Jorrit H. P Published in: Authorea, 2022 Publisher: Authorea DOI: 10.22541/au.166678848.82362633/v2 Non-peer reviewed articles (1) Uniquely Identifying Collectors of Specimens Author(s): Quentin Groom, Mathias Dillen, Pieter Huybrechts Published in: Biodiversity Information Science and Standards, Issue 3, 2019, ISSN 2535-0897 Publisher: Pensoft DOI: 10.3897/biss.3.37013 Conference proceedings (5) Incrementally building FAIR Digital Objects with Specimen Data Refinery workflows Author(s): Woolland, Oliver; Brack, Paul; Soiland-Reyes, Stian; Scott, Ben; Livermore, Laurence Published in: Research Ideas and Outcomes 8: e94349, Issue 25, 2022, ISSN 2367-7163 Publisher: Pensoft DOI: 10.5281/zenodo.7224963 MIDS: The digitisation standard for Natural Science collections Author(s): Elspeth M Haston, Cat Chapman Published in: Biodiversity Information Science and Standards, Issue 6, 2022 Publisher: Pensoft DOI: 10.3897/biss.6.94604 Collections do not have to Remain Ambiguous Forever: Seven steps to getting the correct people into your data Author(s): Groom, Quentin; Braeuchler, Christian; Cubey, Robert; Dillen, Mathias; Huybrechts, Pieter; Kearney, Nicole; Leachman, Siobhan; Paul, Deborah L; Rogers, Heather; Santos, Joaquim; Shorthouse, David; Vaughan, Alison; von Mering, Sabine; Haston, Elspeth Published in: Biodiversity Information Science and Standards 6: e91194, Issue 14, 2022 Publisher: Pensoft DOI: 10.3897/biss.6.91194 Latimer Core: A new data standard for collection descriptions Author(s): Matt Woodburn, Jutta Buschbom, Gabriele Droege, Sharon Grant, Quentin Groom, Janeen Jones, Maarten Trekels, Sarah Vincent, Kate Webbink Published in: Biodiversity Information Science and Standards, Issue 6, 2022 Publisher: Pensoft DOI: 10.3897/biss.6.91159 Combined High-Throughput Imaging and Sequencing: Addressing the collections on demand requirement in SYNTHESYS+ project Author(s): Christos Arvanitidis, Peter Hollingsworth, Patricia Mergen, Patrick Semal, Kleoniki Keklikoglou, Eva Chatzinikolaou, Wouter Addink, Vincent Smith, Dimitrios Koureas Published in: Biodiversity Information Science and Standards, Issue 3, 2019, ISSN 2535-0897 Publisher: Pensoft DOI: 10.3897/biss.3.37290 Monographic books (1) Biodiversity Biobanking – a Handbook on Protocols and Practices Author(s): Carolina Corrales, Jonas J Astrin Published in: Pensoft, Advanced Books, 2023 Publisher: Pensoft DOI: 10.3897/ab.e101876 Searching for OpenAIRE data... 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