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Privacy preserving federated machine learning and blockchaining for reduced cyber risks in a world of distributed healthcare

Deliverables

Publications

Flimma: a federated and privacy-preserving tool for differential gene expression analysis

Author(s): Olga Zolotareva, Reza Nasirigerdeh, Julian Matschinske, Reihaneh Torkzadehmahani, Mohammad Bakhtiari, Tobias Frisch, Julian Späth, David B. Blumenthal, Amir Abbasinejad, Paolo Tieri, Georgios Kaissis, Daniel Rückert, Nina K. Wenke, Markus List, and Jan Baumbach
Published in: Genome Biology, Issue 22, 2021, ISSN 1474-760X
Publisher: Springer Nature
DOI: 10.1186/s13059-021-02553-2

GNN-SubNet: disease subnetwork detection with explainable Graph Neural Networks

Author(s): Bastian Pfeifer, Afan Secic, Anna Saranti, and Andreas Holzinger
Published in: Bioinformatics, Issue 38 (2), 2022, Page(s) ii120–ii126, ISSN 1367-4811
Publisher: Oxford University Press
DOI: 10.1093/bioinformatics/btac478

Privacy-aware multi-institutional time-to-event studies

Author(s): Julian Späth, Julian Matschinske, Frederick K. Kamanu, Sabina A. Murphy, Olga Zolotareva, Mohammad Bakhtiari, Elliott M. Antman, Joseph Loscalzo, Alissa Brauneck, Louisa Schmalhorst, Gabriele Buchholtz, Jan Baumbach
Published in: PLOS Digital Health, 2022, ISSN 2767-3170
Publisher: PLOS
DOI: 10.1371/journal.pdig.0000101

Verifying compliance in process choreographies: Foundations, algorithms, and implementation

Author(s): Walid Fdhila, David Knuplesch, Stefanie Rinderle-Ma, and Manfred Reichert
Published in: Information Systems, Issue 108, 2022, ISSN 0306-4379
Publisher: Elsevier Science & Technology
DOI: 10.1016/j.is.2022.101983

I Know What You Trained Last Summer: A Survey on Stealing Machine Learning Models and Defences

Author(s): Daryna Oliynyk, Rudolf Mayer, Andreas Rauber
Published in: ACM Computing Surveys, Issue 55 (14s), 2023, Page(s) Article No: 324, ISSN 1557-7341
Publisher: Association for Computing Machinery
DOI: 10.1145/3595292

Privacy-Preserving Artificial Intelligence Techniques in Biomedicine

Author(s): Reihaneh Torkzadehmahani, Reza Nasirigerdeh, David B. Blumenthal, Tim Kacprowski, Markus List, Julian Matschinske, Julian Spaeth, Nina Kerstin Wenke, and Jan Baumbach
Published in: Methods Inf Med, Issue 61, 2022, Page(s) e12-e27, ISSN 0026-1270
Publisher: Schattauer
DOI: 10.1055/s-0041-1740630

Multi-omics disease module detection with an explainable Greedy Decision Forest

Author(s): Pfeifer, B., Baniecki, H., Saranti, A. et al. . Sci Rep 12, 16857
Published in: Scientific Reports (Nature), Issue 12, 2022, Page(s) Article number: 16857, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-022-21417-8

sPLINK: a hybrid federated tool as a robust alternative to meta-analysis in genome-wide association studies

Author(s): Reza Nasirigerdeh, Reihaneh Torkzadehmahani, Julian Matschinske, Tobias Frisch, Markus List, Julian Späth, Stefan Weiss, Uwe Völker, Esa Pitkänen, Dominik Heider, Nina Kerstin Wenke, Georgios Kaissis, Daniel Rueckert, Tim Kacprowski, and Jan Baumbach
Published in: Genome Biology, Issue 23, 2022, ISSN 1474-760X
Publisher: Springer Nature
DOI: 10.1186/s13059-021-02562-1

Molecular networks in Network Medicine: Development and applications.

Author(s): Edwin K. Silverman; Harald H.H.W. Schmidt; Eleni Anastasiadou; Lucia Altucci; Marco Angelini; Lina Badimon; Jean-Luc Balligand; Giuditta Benincasa; Giovambattista Capasso; Federica Conte; Antonella Di Costanzo; Lorenzo Farina; Giulia Fiscon; Laurent Gatto; Michele Gentili; Joseph Loscalzo; Cinzia Marchese; Claudio Napoli; Paola Paci; Manuela Petti; John Quackenbush; John Quackenbush; Paolo Tieri;
Published in: Wiley Interdisciplinary Reviews: Systems Biology and Medicine, Issue 12, 2020, Page(s) e1489, ISSN 1939-5094
Publisher: John Wiley and Sons Inc.
DOI: 10.1002/wsbm.1489

Federated horizontally partitioned principal component analysis for biomedical applications

Author(s): Anne Hartebrodt and Richard Roettger
Published in: Bioinformatics Advances, Issue 2, 2022, ISSN 2635-0041
Publisher: Oxford University Press
DOI: 10.1093/bioadv/vbac026

CTCFL regulates the PI3K-Akt pathway and it is a target for personalized ovarian cancer therapy

Author(s): Marisol Salgado-Albarrán, Julian Späth, Rodrigo González-Barrios, Jan Baumbach, and Ernesto Soto-Reyes
Published in: Systems Biology and Applications, Issue 8, 2022, ISSN 2056-7189
Publisher: Nature Publishing Group
DOI: 10.1038/s41540-022-00214-z

Federated singular value decomposition for high-dimensional data

Author(s): Anne Hartebrodt, Richard Röttger, and David Blumenthal
Published in: Data Mining and Knowledge Discovery, 2023, ISSN 1384-5810
Publisher: Kluwer Academic Publishers
DOI: 10.1007/s10618-023-00983-z

Personas for Artificial Intelligence (AI) an Open Source Toolbox

Author(s): Andreas Holzinger, Michaela Kargl, Bettina Kipperer, Peter Regitnig, Markus Plass and Heimo Müller
Published in: IEEE Access, Issue 10, 2022, ISSN 2169-3536
Publisher: Institute of Electrical and Electronics Engineers Inc.
DOI: 10.1109/access.2022.3154776

Federated machine learning for a facilitated implementation of Artificial Intelligence in healthcare – a proof of concept study for the prediction of coronary artery calcification scores

Author(s): Justus Wolff, Julian Matschinske, Dietrich Baumgart, Anne Pytlik, Andreas Keck, Arunakiry Natarajan, Claudio E. von Schacky, Josch K. Pauling and Jan Baumbach
Published in: Journal of Integrative Bioinformatics 2022; 19(4):, Issue 19 (4), 2022, Page(s) 20220032, ISSN 1613-4516
Publisher: Informationsmanagement in der Biotechnologie e.V. (IMBio e.V.)
DOI: 10.1515/jib-2022-0032

Federated Random Forests can improve local performance of predictive models for various healthcare applications

Author(s): Anne-Christin Hauschild, Marta Lemanczyk, Julian Matschinske, Tobias Frisch, Olga Zolotareva, Andreas Holzinger, Jan Baumbach, and Dominik Heider
Published in: Bioinformatics, Issue 38, 2022, ISSN 1367-4803
Publisher: Oxford University Press
DOI: 10.1093/bioinformatics/btac065

Integrative Analysis of Next-Generation Sequencing for Next-Generation Cancer Research toward Artificial Intelligence

Author(s): Youngjun Park, Dominik Heider and Anne-Christin Hauschild
Published in: Cancers, Issue 13, 2021, ISSN 2072-6694
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cancers13133148

Causability and explainability of artificial intelligence in medicine

Author(s): Andreas Holzinger, Georg Langs, Helmut Denk, Kurt Zatloukal, Heimo Müller
Published in: WIREs Data Mining and Knowledge Discovery, Issue 9/4, 2019, ISSN 1942-4787
Publisher: John Wiley and Sons Inc.
DOI: 10.1002/widm.1312

On generating trustworthy counterfactual explanations

Author(s): Javier Del Ser, Alejandro Barredo-Arrieta, Natalia Díaz-Rodríguez, Francisco Herrera, Anna Saranti, and Andreas Holzinger
Published in: Information Sciences, Issue 655, 2024, Page(s) Article Number: 119898, ISSN 0020-0255
Publisher: Elsevier BV
DOI: 10.1016/j.ins.2023.119898

Understanding and Explaining Diagnostic Paths: Toward Augmented Decision Making

Author(s): Markus Plass; Michaela Kargl; Patrick Nitsche; Emilian Jungwirth; Andreas Holzinger; Heimo Muller
Published in: IEEE Computer Graphics and Applications, Issue 42 (6), 2022, Page(s) 47-57, ISSN 0272-1716
Publisher: Institute of Electrical and Electronics Engineers
DOI: 10.1109/mcg.2022.3197957

Transfer learning compensates limited data, batch effects and technological heterogeneity in single-cell sequencing

Author(s): Youngjun Park, Anne-Christin Hauschild, and Dominik Heider
Published in: NAR Genomics and Bioinformatics, Issue 3, 2021, ISSN 2631-9268
Publisher: Oxford University Press
DOI: 10.1093/nargab/lqab104

Hierarchical association of COPD to principal genetic components of biological systems

Author(s): Daniel E. Carlin; Simon J. Larsen; Vikram Sirupurapu; Michael H. Cho; Edwin K. Silverman; Jan Baumbach; Trey Ideker
Published in: PLoS ONE, Issue 18 (5), 2023, Page(s) e0286064, ISSN 1932-6203
Publisher: Public Library of Science
DOI: 10.1371/journal.pone.0286064

dsMTL: a computational framework for privacy-preserving, distributed multi-task machine learning

Author(s): Han Cao, Youcheng Zhang, Jan Baumbach, Paul R Burton, Dominic Dwyer, Nikolaos Koutsouleris, Julian Matschinske, Yannick Marcon, Sivanesan Rajan, Thilo Rieg, Patricia Ryser-Welch, Julian Späth, The COMMITMENT Consortium, Carl Herrmann, Emanuel Schwarz
Published in: Bioinformatics, Issue 38 (21), 2022, Page(s) 4919–4926, ISSN 1367-4811
Publisher: Oxford University Press
DOI: 10.1093/bioinformatics/btac616

Towards multi-modal causability with Graph Neural Networks enabling information fusion for explainable AI

Author(s): Andreas Holzinger, Bernd Malle, Anna Saranti, Bastian Pfeifer
Published in: Information Fusion, Issue 71, 2021, Page(s) 28-37, ISSN 1566-2535
Publisher: Elsevier BV
DOI: 10.1016/j.inffus.2021.01.008

Privacy of Federated QR Decomposition Using Additive Secure Multiparty Computation

Author(s): Hartebrodt A. and Röttger R.
Published in: IEEE Transactions on Information Forensics and Security, Issue 18, 2023, Page(s) 5122-5132, ISSN 1556-6013
Publisher: Institute of Electrical and Electronics Engineers
DOI: 10.1109/tifs.2023.3301710

Robust disease module mining via enumeration of diverse prize-collecting Steiner trees

Author(s): Judith Bernett, Dominik Krupke, Sepideh Sadegh, Jan Baumbach, Sándor P Fekete, Tim Kacprowski, Markus List, and David B Blumenthal
Published in: Bioinformatics, Issue 38, 2022, ISSN 1367-4803
Publisher: Oxford University Press
DOI: 10.1093/bioinformatics/btab876

Ensemble-GNN: federated ensemble learning with graph neural networks for disease module discovery and classification

Author(s): Bastian Pfeifer; Hryhorii Chereda; Roman Martin; Anna Saranti; Sandra Clemens; Anne-Christin Hauschild; Tim Beißbarth; Andreas Holzinger; Dominik Heider
Published in: Bioinformatics, Issue 39 (11), 2023, Page(s) Article ID: btad703, ISSN 1367-4811
Publisher: Oxford University Press
DOI: 10.1101/2023.03.22.533772

Federated machine learning in data-protection-compliant research

Author(s): Alissa Brauneck, Louisa Schmalhorst, Mohammad Mahdi Kazemi Majdabadi, Mohammad Bakhtiari, Uwe Völker, Christina Caroline Saak, Jan Baumbach, Linda Baumbach & Gabriele Buchholtz
Published in: Nature Machine Intelligence, Issue 5, 2023, Page(s) 2–4, ISSN 2522-5839
Publisher: Springer Nature Limited
DOI: 10.1038/s42256-022-00601-5

Identifying Appropriate Intellectual Property Protection Mechanisms for Machine Learning Models: A Systematization of Watermarking, Fingerprinting, Model Access, and Attacks

Author(s): Isabell Lederer; Rudolf Mayer; Andreas Rauber
Published in: IEEE Transactions on Neural Networks and Learning Systems, Issue 02 June 2023, 2023, Page(s) 1-19, ISSN 2162-2388
Publisher: IEEE
DOI: 10.1109/tnnls.2023.3270135

Causability and explainability of artificial intelligence in medicine

Author(s): Andreas Holzinger, Georg Langs, Helmut Denk, Kurt Zatloukal, Heimo Müller
Published in: WIREs Data Mining and Knowledge Discovery, Issue 9/4, 2019, ISSN 1942-4787
Publisher: John Wiley and Sons Inc.
DOI: 10.1002/widm.1312

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research

Author(s): Franziska Hufsky, Kevin Lamkiewicz, Alexandre Almeida, Abdel Aouacheria, Cecilia Arighi, Alex Bateman, Jan Baumbach, Niko Beerenwinkel, Christian Brandt, Marco Cacciabue, Sara Chuguransky, Oliver Drechsel, Robert D. Finn, Adrian Fritz, Stephan Fuchs, Georges Hattab, Anne-Christin Hauschild, Dominik Heider, Marie Hoffmann, Martin Hölzer, Stefan Hoops, Lars Kaderali, Ioanna Kalvari, Max von Kleist,
Published in: Briefings in Bioinformatics, Issue 22, 2021, Page(s) 642–663, ISSN 1477-4054
Publisher: Oxford University Press
DOI: 10.1093/bib/bbaa232

On the limits of active module identification

Author(s): Olga Lazareva, Jan Baumbach, Markus List, David B Blumenthal
Published in: Briefings in Bioinformatics, 2021, ISSN 1467-5463
Publisher: Oxford University Press
DOI: 10.1093/bib/bbab066

Development and applications

Author(s): Edwin K. Silverman; Harald H.H.W. Schmidt; Eleni Anastasiadou; Lucia Altucci; Marco Angelini; Lina Badimon; Jean-Luc Balligand; Giuditta Benincasa; Giovambattista Capasso; Federica Conte; Antonella Di Costanzo; Lorenzo Farina; Giulia Fiscon; Laurent Gatto; Michele Gentili; Joseph Loscalzo; Cinzia Marchese; Claudio Napoli; Paola Paci; Manuela Petti; John Quackenbush; John Quackenbush; Paolo Tieri;
Published in: WIREs Systems Biology and Medicine, Issue 12, 2020, ISSN 1939-5094
Publisher: John Wiley and Sons Inc.
DOI: 10.1002/wsbm.1489

Explainable AI and Multi-Modal Causability in Medicine

Author(s): Andreas Holzinger
Published in: i-com, Issue 19, 2020, Page(s) 171–179, ISSN 1618-162X
Publisher: Oldenbourg Wissenschaftsverlag
DOI: 10.1515/icom-2020-0024

The AIMe registry for artificial intelligence in biomedical research

Author(s): Julian Matschinske, Nicolas Alcaraz, Arriel Benis, Martin Golebiewski, Dominik G. Grimm, Lukas Heumos, Tim Kacprowski, Olga Lazareva, Markus List, Zakaria Louadi, Josch K. Pauling, Nico Pfeifer, Richard Röttger, Veit Schwämmle, Gregor Sturm, Alberto Traverso, Kristel Van Steen, Martiela Vaz de Freitas, Gerda Cristal Villalba Silva, Leonard Wee, Nina K. Wenke, Massimiliano Zanin, Olga Zolotareva,
Published in: Nature Methods, Issue 18, 2021, Page(s) 1128–1131, ISSN 1548-7091
Publisher: Nature Publishing Group
DOI: 10.1038/s41592-021-01241-0

The FeatureCloud Platform for Federated Learning in Biomedicine: A Unified Approach

Author(s): Julian Matschinske; Julian Späth; Mohammad Bakhtiari; Niklas Probul; Mohammad Mahdi Kazemi Majdabadi; Reza Nasirigerdeh; Reihaneh Torkzadehmahani; Anne Hartebrodt; Balazs-Attila Orban; Sándor-József Fejér; Olga Zolotareva; Supratim Das; Linda Baumbach; Josch K Pauling; Olivera Tomašević; Béla Bihari; Marcus Bloice; Nina C Donner; Walid Fdhila; Tobias Frisch; Anne-Christin Hauschild; Dominik
Published in: Journal of Medical Internet Research, Issue 25, 2023, Page(s) e42621, ISSN 1438-8871
Publisher: Journal of medical Internet Research
DOI: 10.2196/42621

Federated Machine Learning, Privacy-Enhancing Technologies, and Data Protection Laws in Medical Research: Scoping Review

Author(s): Alissa Brauneck; Louisa Schmalhorst; Mohammad Mahdi Kazemi Majdabadi; Mohammad Bakhtiari; Uwe Völker; Jan Baumbach; Linda Baumbach; Gabriele Buchholtz
Published in: Journal of Medical Internet Research, Issue 25, 2023, Page(s) e41588, ISSN 1438-8871
Publisher: Journal of medical Internet Research
DOI: 10.2196/41588

The underuse of AI in the health sector: Opportunity costs, success stories, risks and recommendations

Author(s): Ugo Pagallo; Shane O’Sullivan; Nathalie Nevejans; Andreas Holzinger; Michael Friebe; Fleur Jeanquartier; Claire Jean-Quartier; Arkadiusz Miernik
Published in: Health and Technology, Issue 14, 2023, Page(s) 1-14, ISSN 2190-7188
Publisher: Springer Verlag
DOI: 10.1007/s12553-023-00806-7

Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing

Author(s): Sepideh Sadegh, Julian Matschinske, David B. Blumenthal, Gihanna Galindez, Tim Kacprowski, Markus List, Reza Nasirigerdeh, Mhaned Oubounyt, Andreas Pichlmair, Tim Daniel Rose, Marisol Salgado-Albarrán, Julian Späth, Alexey Stukalov, Nina K. Wenke, Kevin Yuan, Josch K. Pauling, Jan Baumbach
Published in: Nature Communications, Issue 11/1, 2020, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-020-17189-2

Fostering reproducibility, reusability, and technology transfer in health informatics

Author(s): Anne-Christin Hauschild, Lisa Eick, Joachim Wienbeck, Dominik Heider
Published in: iScience, Issue 24/7, 2021, Page(s) 102803, ISSN 2589-0042
Publisher: Cell Press journal
DOI: 10.1016/j.isci.2021.102803

Lessons from the COVID-19 pandemic for advancing computational drug repurposing strategies

Author(s): Gihanna Galindez, Julian Matschinske, Tim Daniel Rose, Sepideh Sadegh, Marisol Salgado-Albarrán, Julian Späth, Jan Baumbach, Josch Konstantin Pauling
Published in: Nature Computational Science, Issue 1/1, 2021, Page(s) 33-41, ISSN 2662-8457
Publisher: Nature Publishing Group
DOI: 10.1038/s43588-020-00007-6

Explainability and causability in digital pathology

Author(s): Plass, Markus; Kargl, Michaela; Kiehl, Tim‐Rasmus; Regitnig, Peter; Geißler, Christian; Evans, Theodore; Zerbe, Norman; Carvalho, Rita; Holzinger, Andreas; Müller, Heimo
Published in: The Journal of Pathology: Clinical Research, Issue 9, 2023, Page(s) 251–260, ISSN 2056-4538
Publisher: The Pathological Society of Great Britain and Ireland and John Wiley & Sons Ltd.
DOI: 10.1002/cjp2.322

Toward human-level concept learning: Pattern benchmarking for AI algorithms

Author(s): Andreas Holzinger, Anna Saranti, Alessa Angerschmid, Bettina Finzel, Ute Schmid, Heimo Mueller
Published in: Patterns, Issue 4 (8), 2023, Page(s) 100788, ISSN 2666-3899
Publisher: Cell Press, New York, NY, USA
DOI: 10.1016/j.patter.2023.100788

Information fusion as an integrative cross-cutting enabler to achieve robust, explainable, and trustworthy medical artificial intelligence

Author(s): Andreas Holzinger, Matthias Dehmer, Frank Emmert-Streib, Rita Cucchiara, Isabelle Augenstein, Javier Del Ser, Wojciech Samek, Igor Jurisica, and Natali Díaz-Rodríguez
Published in: Information Fusion, Issue 79, 2022, ISSN 1566-2535
Publisher: Elsevier BV
DOI: 10.1016/j.inffus.2021.10.007

Enabling single-cell trajectory network enrichment

Author(s): Alexander G. B. Grønning, Mhaned Oubounyt, Kristiyan Kanev, Jesper Lund, Tim Kacprowski, Dietmar Zehn, Richard Röttger, Jan Baumbach
Published in: Nature Computational Science, Issue 1/2, 2021, Page(s) 153-163, ISSN 2662-8457
Publisher: Nature Publishing Group
DOI: 10.1038/s43588-021-00025-y

Identifying Appropriate Intellectual Property Protection Mechanisms for Machine Learning Models: A Systematization of Watermarking, Fingerprinting, Model Access, and Attacks

Author(s): Isabell Lederer; Rudolf Mayer; Andreas Rauber
Published in: IEEE Transactions on Neural Networks and Learning Systems, Issue n/a (online first), 2023, Page(s) 1-19, ISSN 2162-237X
Publisher: IEEE Computational Intelligence Society
DOI: 10.1109/tnnls.2023.3270135

Toward Human–AI Interfaces to Support Explainability and Causability in Medical AI

Author(s): Andreas Holzinger; Heimo Müller
Published in: Computer, Issue 25, 2021, ISSN 0018-9162
Publisher: Institute of Electrical and Electronics Engineers
DOI: 10.1109/mc.2021.3092610

Achieving Privacy and Tracing Unauthorised Usage: Anonymisation-based Fingerprinting of Private Data

Author(s): Tanja Šarčević, Rudolf Mayer, Philipp Adler
Published in: 2023 IEEE International Conference on Big Data, Issue 18.12.2023, 2023, Page(s) 5578-5587, ISBN 979-8-3503-2445-7
Publisher: IEEE
DOI: 10.1109/bigdata59044.2023.10386209

Analysing Utility Loss in Federated Learning with Differential Privacy

Author(s): Anastasia Pustozerova, Jan Baumbach, Rudolf Mayer
Published in: International Conference on Trust, Security and Privacy in Computing and Communications (TrustCom), Issue 3.11.2023, 2023
Publisher: IEEE
DOI: 10.13140/rg.2.2.34594.03521

How much is the fork? Fast Probability and Profitability Calculation during Temporary Forks

Author(s): Aljosha Judmayer, Nicholas Stifter, Philipp Schindler, and Edgar Weippl
Published in: Companion Proceedings of the Web Conference 2022, Issue 25 - 29 April 2022, 2022, Page(s) 1-13, ISBN 978-1-4503-9130-6
Publisher: International Association for Cryptologic Research
DOI: 10.1145/3487553.3524627

Human-in-the-Loop Integration with Domain-Knowledge Graphs for Explainable Federated Deep Learning.

Author(s): Holzinger A. et al.
Published in: Holzinger, A., Kieseberg, P., Cabitza, F., Campagner, A., Tjoa, A.M., Weippl, E. (eds) Machine Learning and Knowledge Extraction. CD-MAKE 2023. Lecture Notes in Computer Science, Issue 14065, 2023, ISBN 978-3-031-40836-6
Publisher: Springer
DOI: 10.1007/978-3-031-40837-3_4

k-Anonymity on Metagenomic Features in Microbiome Databases

Author(s): Rudolf Mayer; Alicja Karlowicz; Markus Hittmeir
Published in: ARES '23: Proceedings of the 18th International Conference on Availability, Reliability and Security, Issue 18, 2023, Page(s) 1-11, ISBN 979-8-4007-0772-8
Publisher: Association for Computing Machinery, New York, NY, United States
DOI: 10.1145/3600160.3600178

SoK: How private is Bitcoin? Classification and Evaluation of Bitcoin Privacy Techniques

Author(s): Simin Ghesmati; Walid Fdhila; Edgar Weippl
Published in: ARES '22: Proceedings of the 17th International Conference on Availability, Reliability and Security, Issue 17, 2022, Page(s) 1-14, ISBN 978-1-4503-9670-7
Publisher: ACM Digital Library, New York, NY, United States
DOI: 10.1145/3538969.3538971

Potential Applications of Transfer Learning in Limited Biomedical Data

Author(s): Park, Y; Hauschild, AC; Heider, D
Published in: 67. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie e. V. (GMDS), 13. Jahreskongress der Technologie- und Methodenplattform für die vernetzte medizinische Forschung e.V. (TMF); 20220821-20220825; sine loco [digital]; DOCAbstr. 75 /20220819/, Issue 67, 2022
Publisher: Deutsche Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie
DOI: 10.3205/22gmds112

Differentially Private Federated Learning: Privacy and Utility Analysis of Output Perturbation and DP-SGD

Author(s): Anastasia Pustozerova; Jan Baumbach; Rudolf Mayer
Published in: 2023 IEEE International Conference on Big Data (BigData), Issue 18.12.2023, 2023, Page(s) 5549-5558, ISBN 979-8-3503-2445-7
Publisher: IEEE
DOI: 10.1109/bigdata59044.2023.10386466

Usability of Cryptocurrency Wallets Providing CoinJoin Transactions

Author(s): Simin Ghesmati, Walid Fdhila and Edgar Weippl
Published in: Proceedings of the Usable Security and Privacy (USEC) Symposium 2022, 2022, ISBN 1-891562-79-7
Publisher: The Internet Society
DOI: 10.14722/usec.2022.23037

A Comparison of Federated Aggregation Strategies and Architectures for Next-word Prediction

Author(s): Yana Sakhnovych; Richard Röttger; Rudolf Mayer;
Published in: 2023 IEEE International Conference on Big Data (BigData), Issue 18.12.2023, 2023, Page(s) 5569-5577, ISBN 979-8-3503-2445-7
Publisher: IEEE
DOI: 10.1109/bigdata59044.2023.10386579

Information Leaks in Federated Learning

Author(s): Anastassiya Pustozerova, Rudolf Mayer
Published in: Proceedings 2020 Workshop on Decentralized IoT Systems and Security, 2020, ISBN 1-891562-64-9
Publisher: Internet Society
DOI: 10.14722/diss.2020.23004

Data Poisoning in Sequential and Parallel Federated Learning

Author(s): Florian Nuding and Rudolf Mayer
Published in: IWSPA '22: Proceedings of the 2022 ACM on International Workshop on Security and Privacy Analytics, 2022, Page(s) 24-34, ISBN 978-1-4503-9230-3
Publisher: Association for Computing Machinery (ACM)
DOI: 10.1145/3510548.3519372

The Tower of Babel in Explainable Artificial Intelligence (XAI)

Author(s): David Schneeberger, Richard Röttger, Federico Cabitza, Andrea Campagner, Markus Plass, Heimo Müller & Andreas Holzinger
Published in: Holzinger, A., Kieseberg, P., Cabitza, F., Campagner, A., Tjoa, A.M., Weippl, E. (eds) Machine Learning and Knowledge Extraction. CD-MAKE 2023. Lecture Notes in Computer Science, Issue 14065, 2023, Page(s) 65–81, ISBN 978-3-031-40836-6
Publisher: Springer
DOI: 10.1007/978-3-031-40837-3_5

Visualization of Histopathological Decision Making Using a Roadbook Metaphor

Author(s): Birgit Pohn, Marie-Christina Mayer, Robert Reihs, Andreas Holzinger, Kurt Zatloukal, Heimo Muller
Published in: 2019 23rd International Conference Information Visualisation (IV), 2019, Page(s) 392-397, ISBN 978-1-7281-2838-2
Publisher: IEEE
DOI: 10.1109/iv.2019.00073

Information Leaks in Federated Learning

Author(s): Anastasia Pustozerova, Rudolf Mayer
Published in: 2020
Publisher: NDSS -Workshop on Decentralized IoT Systems and Security (DISS) 2020

Towards a Deeper Understanding of How a Pathologist Makes a Diagnosis: Visualization of the Diagnostic Process in Histopathology

Author(s): Birgit Pohn, Michaela Kargl, Robert Reihs, Andreas Holzinger, Kurt Zatloukal, Heimo Muller
Published in: 2019 IEEE Symposium on Computers and Communications (ISCC), 2019, Page(s) 1081-1086, ISBN 978-1-7281-2999-0
Publisher: IEEE
DOI: 10.1109/iscc47284.2019.8969598

Visualization of Histopathological Decision Making Using a Roadbook Metaphor

Author(s): Birgit Pohn, Marie-Christina Mayer, Robert Reihs, Andreas Holzinger, Kurt Zatloukal, Heimo Muller
Published in: 2019 23rd International Conference Information Visualisation (IV), 2019, Page(s) 392-397, ISBN 978-1-7281-2838-2
Publisher: IEEE
DOI: 10.1109/iv.2019.00073

Poisoning Attacks in Federated Learning - An Evaluation on Traffic Sign Classification

Author(s): Florian Nuding, Rudolf Mayer
Published in: Proceedings of the Tenth ACM Conference on Data and Application Security and Privacy, 2020, Page(s) 168-170, ISBN 9781-450371070
Publisher: ACM
DOI: 10.1145/3374664.3379534

An Efficient Approach for Anonymising the Structure of Heterogeneous Graphs

Author(s): Requena GA, Mayer R, and Ekelhart A
Published in: 2022 IEEE International Conference on Big Data (Big Data), 2022, Page(s) 5783-5791, ISBN 978-1-6654-8045-1
Publisher: IEEE
DOI: 10.1109/bigdata55660.2022.10020301

Visualization of Histopathological Decision Making Using a Roadbook Metaphor

Author(s): Birgit Pohn; Marie-Christina Mayer; Robert Reihs; Andreas Holzinger; Kurt Zatloukal; Heimo Müller
Published in: 23rd International Conference Information Visualisation (IV), Issue 02-05 July 2019, 2019, Page(s) 392-397, ISBN 978-1-7281-2838-2
Publisher: IEEE
DOI: 10.1109/iv.2019.00073

Adaptive Attacks and Targeted Fingerprinting of Relational Data

Author(s): Šarčević T, Mayer R, and Rauber A
Published in: 2022 IEEE International Conference on Big Data (Big Data), 2022, Page(s) 5792-5801, ISBN 978-1-6654-8045-1
Publisher: IEEE
DOI: 10.1109/bigdata55660.2022.10020266

Poisoning Attacks in Federated Learning - An Evaluation on Traffic Sign Classification

Author(s): Florian Nuding, Rudolf Mayer
Published in: Proceedings of the Tenth ACM Conference on Data and Application Security and Privacy, 2020, Page(s) 168-170, ISBN 9781450371070
Publisher: ACM
DOI: 10.1145/3374664.3379534

Estimating (Miner) Extractable Value is Hard, Let’s Go Shopping!

Author(s): Aljosha Judmayer, Nicholas Stifter, Philipp Schindler, and Edgar Weippl
Published in: Matsuo, S., et al. Financial Cryptography and Data Security (FC 2022). FC 2022 International Workshops. Lecture Notes in Computer Science, Issue Vol. 13412, 2023, ISBN 978-3-031-32414-7
Publisher: Springer
DOI: 10.1007/978-3-031-32415-4_6

Opportunistic Algorithmic Double-Spending: How I Learned to Stop Worrying and Love the Fork

Author(s): Stifter N, Judmayer A, Schindler P, and Weippl E
Published in: Atluri, V., Di Pietro, R., Jensen, C.D., Meng, W. (eds) Computer Security – ESORICS 2022. Lecture Notes in Computer Science, Issue 13554, 2022, ISBN 978-3-031-17139-0
Publisher: Springer
DOI: 10.1007/978-3-031-17140-6_3

Towards a Deeper Understanding of How a Pathologist Makes a Diagnosis: Visualization of the Diagnostic Process in Histopathology

Author(s): Birgit Pohn; Michaela Kargl; Robert Reihs; Andreas Holzinger; Kurt Zatloukal; Heimo Müller
Published in: 2019 IEEE Symposium on Computers and Communications (ISCC), Issue 29 June - 03 July 2019, 2019, Page(s) 1081-1086, ISBN 978-1-7281-2999-0
Publisher: IEEE
DOI: 10.1109/iscc47284.2019.8969598

Federated Principal Component Analysis for Genome-Wide Association Studies

Author(s): Anne Hartebrodt, Reza Nasirigerdeh, David Blumenthal, and Richard Röttger
Published in: IEEE International Conference on Data Mining (ICDM) 2021, 2021, Page(s) 1090-1095, ISBN 978-1-6654-2398-4
Publisher: IEEE
DOI: 10.1109/icdm51629.2021.00127

Towards a Deeper Understanding of How a Pathologist Makes a Diagnosis: Visualization of the Diagnostic Process in Histopathology

Author(s): Birgit Pohn, Michaela Kargl, Robert Reihs, Andreas Holzinger, Kurt Zatloukal, Heimo Muller
Published in: 2019 IEEE Symposium on Computers and Communications (ISCC), 2019, Page(s) 1081-1086, ISBN 978-1-7281-2999-0
Publisher: IEEE
DOI: 10.1109/iscc47284.2019.8969598

Challenges and Opportunities of Blockchain for Auditable Processes in the Healthcare Sector

Author(s): Fdhila W, Stifter N, and Judmayer A
Published in: Marrella, A., et al. Business Process Management: Blockchain, Robotic Process Automation, and Central and Eastern Europe Forum. BPM 2022. Lecture Notes in Business Information Processing, Issue 459, 2022, ISBN 978-3-031-16167-4
Publisher: Springer
DOI: 10.1007/978-3-031-16168-1_5

User-Perceived Privacy in Blockchain

Author(s): Simin Ghesmati, Walid Fdhila, and Edgar Weippl
Published in: Financial Cryptography and Data Security. FC 2022 International Workshops. Lecture Notes in Computer Science, Issue vol. 13412, 2023, ISBN 978-3-031-32414-7
Publisher: Springer
DOI: 10.1007/978-3-031-32415-4_12

Anomaly Detection from Distributed Data Sources via Federated Learning

Author(s): Florencia Cavallin and Rudolf Mayer
Published in: Lecture Notes in Networks and Systems, Issue 450, 2022, ISBN 978-3-030-99586-7
Publisher: Springer
DOI: 10.1007/978-3-030-99587-4_27

Training Effective Neural Networks on Structured Data with Federated Learning

Author(s): Anastasia Pustozerova, Andreas Rauber, Rudolf Mayer
Published in: Advanced Information Networking and Applications - Proceedings of the 35th International Conference on Advanced Information Networking and Applications (AINA-2021), Volume 2, Issue 226, 2021, Page(s) 394-406, ISBN 978-3-030-75074-9
Publisher: Springer International Publishing
DOI: 10.1007/978-3-030-75075-6_32

An Analysis of Different Notions of Effectiveness in k-Anonymity

Author(s): Tanja Šarčević, David Molnar, Rudolf Mayer
Published in: Privacy in Statistical Databases - UNESCO Chair in Data Privacy, International Conference, PSD 2020, Tarragona, Spain, September 23–25, 2020, Proceedings, Issue 12276, 2020, Page(s) 121-135, ISBN 978-3-030-57520-5
Publisher: Springer International Publishing
DOI: 10.1007/978-3-030-57521-2_9

Federated Unsupervised Machine Learning

Author(s): Hartebrodt, Anne
Published in: SDU - University of Southern Denmark, Department of Mathematics and Computer Science, Issue n/a, 2021, Page(s) 1-192
Publisher: Syddansk Universitet, Det Naturvidenskabelige Fakultet
DOI: 10.21996/z4yw-jm67

Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing

Author(s): Sepideh Sadegh, Julian Matschinske, David B. Blumenthal, Gihanna Galindez, Tim Kacprowski, Markus List, Reza Nasirigerdeh, Mhaned Oubounyt, Andreas Pichlmair, Tim Daniel Rose, Marisol Salgado-Albarrán, Julian Späth, Alexey Stukalov, Nina K. Wenke, Kevin Yuan, Josch K. Pauling, Jan Baumbach
Published in: 2020
Publisher: Cornell University, Quantitative Biology - Molecular

Network Module Detection from Multi-Modal Node Features with a Greedy Decision Forest for Actionable Explainable AI

Author(s): Bastian Pfeifer, Hubert Baniecki, Anna Saranti, Przemyslaw Biecek, and Andreas Holzinger
Published in: Arxiv (Preprint), 2021
Publisher: Cornell University
DOI: 10.48550/arxiv.2108.11674

What is Meant by Permissionless Blockchains?

Author(s): Nicholas Stifter, Aljosha Judmayer, Philipp Schindler, Andreas Kern, and Walid Fdhila
Published in: Cryptology ePrint Archive (Preprint), Issue 23, 2021, Page(s) See video of paper presentation: https://ucloud.univie.ac.at/index.php/s/eWa6ibu4YgFjfFO, ISSN 1432-1378
Publisher: The International Association for Cryptologic Research (IACR)'

Privacy-preserving Artificial Intelligence Techniques in Biomedicine

Author(s): Torkzadehmahani, Reihaneh; Nasirigerdeh, Reza; Blumenthal, David B.; Kacprowski, Tim; List, Markus; Matschinske, Julian; Späth, Julian; Wenke, Nina Kerstin; Bihari, Béla; Frisch, Tobias; Hartebrodt, Anne; Hausschild, Anne-Christin; Heider, Dominik; Holzinger, Andreas; Hötzendorfer, Walter; Kastelitz, Markus; Mayer, Rudolf; Nogales, Cristian; Pustozerova, Anastasia; Röttger, Richard; Schmidt, H
Published in: arXiv, Issue 12, 2020
Publisher: arXiv / Cornell Tech

Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing

Author(s): Sepideh Sadegh, Julian Matschinske, David B. Blumenthal, Gihanna Galindez, Tim Kacprowski, Markus List, Reza Nasirigerdeh, Mhaned Oubounyt, Andreas Pichlmair, Tim Daniel Rose, Marisol Salgado-Albarrán, Julian Späth, Alexey Stukalov, Nina K. Wenke, Kevin Yuan, Josch K. Pauling, Jan Baumbach
Published in: 2020
Publisher: Cornell University, Quantitative Biology - Molecular Networks

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