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Insights from within-host dynamics on the coexistence of antibiotic resistant and sensitive pathogens

Publications

Years of life lost estimates cannot always be taken at face value: Response to “COVID-19 – exploring the implications of long-term condition type and extent of multimorbidity on years of life lost: a modelling study”

Author(s): Marius Rubo, Peter Czuppon
Published in: Wellcome Open Research, 5, 2020, Page(s) 137, ISSN 2398-502X
Publisher: F1000 Research Ltd
DOI: 10.12688/wellcomeopenres.16015.1

The effect of habitat choice on evolutionary rescue in subdivided populations

Author(s): Peter Czuppon, François Blanquart, Hildegard Uecker, Florence Débarre
Published in: The American Naturalist, 2021, ISSN 0003-0147
Publisher: University of Chicago Press
DOI: 10.1086/714034

Understanding evolutionary and ecological dynamics using a continuum limit

Author(s): Peter Czuppon, Arne Traulsen
Published in: Ecology and Evolution, 2021, ISSN 2045-7758
Publisher: John Wiley and Sons Ltd
DOI: 10.1002/ece3.7205

Success of prophylactic antiviral therapy for SARS-CoV-2: Predicted critical efficacies and impact of different drug-specific mechanisms of action

Author(s): Peter Czuppon, Florence Débarre, Antonio Gonçalves, Olivier Tenaillon, Alan S. Perelson, Jérémie Guedj, François Blanquart
Published in: PLOS Computational Biology, 17/3, 2021, Page(s) e1008752, ISSN 1553-7358
Publisher: Public Library of Science (PLoS)
DOI: 10.1371/journal.pcbi.1008752

The search for sexually antagonistic genes: Practical insights from studies of local adaptation and statistical genomics

Author(s): Filip Ruzicka, Ludovic Dutoit, Peter Czuppon, Crispin Y. Jordan, Xiang‐Yi Li, Colin Olito, Anna Runemark, Erik I. Svensson, Homa Papoli Yazdi, Tim Connallon
Published in: Evolution Letters, 4/5, 2020, Page(s) 398-415, ISSN 2056-3744
Publisher: Wiley Online Library
DOI: 10.1002/evl3.192

From individual-based epidemic models to McKendrick-von Foerster PDEs: A guide to modeling and inferring COVID-19 dynamics

Author(s): Foutel-Rodier, Félix; Blanquart, François; Courau, Philibert; Czuppon, Peter; Duchamps, Jean-Jil; Gamblin, Jasmine; Kerdoncuff, Élise; Kulathinal, Rob; Régnier, Léo; Vuduc, Laura; Lambert, Amaury; Schertzer, Emmanuel
Published in: arXiv preprint, 2020
Publisher: arXiv

A stochastic epidemiological model to estimate the size of an outbreak at the first case identification

Author(s): Peter Czuppon; François Blanquart; Florence Débarre
Published in: arXiv/medRxiv preprint, 2021
Publisher: arXiv
DOI: 10.1101/2020.11.17.20233403

Software

YLL-computation

Author(s): Peter Czuppon; Marius Rubo
DOI: 10.5281/zenodo.3874662
Publisher: Zenodo

YLL-computation

Author(s): Czuppon, Peter; Rubo, Marius
DOI: 10.5281/zenodo.3874661
Publisher: Zenodo