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Publications

Spatial memory drives foraging strategies of wolves, but in highly individual ways.

Auteurs: Gurarie, E., Bracis, C., Brilliantova, A. Kojola, I., Suutarinen, J., Ovaskainen, O., Potluri, S. and Fagan, W. F.
Publié dans: Frontiers in Ecology and Evolution, 2022, ISSN 2296-701X
Éditeur: Frontiers Media S.A.
DOI: 10.3389/fevo.2022.768478

Differences in spatial versus temporal reaction norms for spring and autumn phenological events

Auteurs: Delgado, M., Roslin, T., Tikhonov, G., Meyke, E., Lo, C., Gurarie, E., Abadonova, M., Abduraimov, O., Adrianova, O., Akimova, T., Akkiev, M., Ananin, A., Andreeva, E., Andriychuk, N., Antipin, M., Arzamascev, K., Babina, S., Babushkin, M., Bakin, O., Barabancova, A., Basilskaja, I., Belova, N., Belyaeva, N., Bespalova, T., Bisikalova, E., Bobretsov, A., Bobrov, V., Bobrovskyi, V., Bochkareva, E.,
Publié dans: PNAS, 2020, ISSN 1091-6490
Éditeur: National Academy of Sciences
DOI: 10.1073/pnas.2002713117

Spore production monitoring reveals contrasting seasonal strategies and a trade‐off between spore size and number in wood‐inhabiting fungi

Auteurs: Veera Norros; Panu Halme; Anna Norberg; Otso Ovaskainen
Publié dans: Functional Ecology, Numéro 37, 2023, Page(s) 551–563, ISSN 1365-2435
Éditeur: John Wiley & Sons Ltd
DOI: 10.1111/1365-2435.14254

A Successful Crowdsourcing Approach for Bird Sound Classification

Auteurs: Petteri Lehikoinen; Meeri Rannisto; Ulisses Camargo; Aki Aintila; Patrik Lauha; Esko Piirainen; Panu Somervuo; Otso Ovaskainen
Publié dans: Citizen Science: Theory and Practice, Numéro 8 (1), 2023, Page(s) 16, ISSN 2057-4991
Éditeur: Ubiquity Press
DOI: 10.5334/cstp.556

Covariate-Informed Latent Interaction Models: Addressing Geographic & Taxonomic Bias in Predicting Bird–Plant Interactions

Auteurs: Georgia Papadogeorgou, Carolina Bello, Otso Ovaskainen, David B. Dunson
Publié dans: Journal of the American Statistical Association, Numéro 118 (544), 2023, Page(s) 2250–2261, ISSN 1537-274X
Éditeur: Taylor & Francis Ltd
DOI: 10.1080/01621459.2023.2208390

The role of seasonality in shaping the interactions of honeybees with other taxa

Auteurs: Helena Wirta; Mirkka Jones; Pablo Peña‐Aguilera; Camilo Chacón‐Duque; Eero Vesterinen; Otso Ovaskainen; Nerea Abrego; Tomas Roslin
Publié dans: Ecology and Evolution, Numéro Vol 13, Iss 10, 2023, ISSN 2041-210X
Éditeur: John Wiley and Sons Inc.
DOI: 10.1002/ece3.10580

Habitat area and local habitat conditions outweigh fragmentation effects on insect communities in vineyards

Auteurs: Laura Bosco; Valentin Moser; Mirkka M. Jones; Øystein Opedal; Otso Ovaskainen; Gerber Sonja; Roel Van Klink; Samuel A. Cushman; Raphaël Arlettaz; Alain Jacot
Publié dans: Ecological Solutions and Evidence, Numéro 4 (1), 2023, ISSN 2688-8319
Éditeur: John Wiley & Sons Inc.
DOI: 10.1002/2688-8319.12193

Movement of forest‐dependent dung beetles through riparian buffers in Bornean oil palm plantations

Auteurs: Gray, Ross E., J.; Rodriguez, Luisa, F.; Lewis, Owen, T.; Chung, Arthur Y., C.; Ovaskainen, Otso; Slade, Eleanor, M.
Publié dans: Journal of Applied Ecology, Numéro 59, 2022, Page(s) 238-250, ISSN 1365-2664
Éditeur: British Ecological Society
DOI: 10.1111/1365-2664.14049

FAVIS: Fast and versatile protocol for non-destructive metabarcoding of bulk insect samples

Auteurs: Iwaszkiewicz-Eggebrecht, Elzbieta; Lukasik, Piotr; Buczek, Mateusz; Deng, Junchen; Hartop, Emily A.; Prus-Frankowska, Monika; Viteri, Paulina; Andersson, Anders F.; Roslin, Tomas; Tack, Ayco J. M.; Ronquist, Fredrik; Miraldo, Andreia
Publié dans: PLoS ONE, Numéro 18 (7), 2023, ISSN 1932-6203
Éditeur: Public Library of Science

Optimizing insect metabarcoding using replicated mock communities.

Auteurs: Elzbieta Iwaszkiewicz‐Eggebrecht; Emma Granqvist; Mateusz Buczek; Monika Prus; Jan Kudlicka; Tomas Roslin; Ayco J. M. Tack; Anders F. Andersson; Andreia Miraldo; Fredrik Ronquist; Piotr Łukasik
Publié dans: Methods in Ecology and Evolution, Numéro Vol 14, Iss 4, 2023, Page(s) 1130-1146, ISSN 2041-210X
Éditeur: John Wiley and Sons Inc.
DOI: 10.1111/2041-210x.14073

Diverging trends and drivers of Arctic flower production in Greenland over space and time

Auteurs: Becker-Scarpitta, Antoine; Antão, Laura H.; Schmidt, Niels Martin; Blanchet, F. Guillaume; Kaarlejärvi, Elina; Raundrup, Katrine; Roslin, Tomas
Publié dans: Polar Biology, Numéro 46, 2023, Page(s) 837-848, ISSN 1432-2056
Éditeur: Springer
DOI: 10.1007/s00300-023-03164-2

Climate variability and aridity modulate the role of leaf shelters for arthropods: A global experiment

Auteurs: Gustavo Q. Romero,Thiago Gonçalves-Souza,Tomas Roslin,Robert J. Marquis,Nicholas A.C. Marino,Vojtech Novotny,Tatiana Cornelissen,Jerome Orivel,Shen Sui,Gustavo Aires,Reuber Antoniazzi,Wesley Dáttilo,Crasso P. B. Breviglieri,Annika Busse,Heloise Gibb,Thiago J. Izzo,Tomas Kadlec,Victoria Kemp,Monica Kersch-Becker,Michal Knapp,Pavel Kratina,Rebecca Luke,Stefan Majnarić,Robin Maritz,Paulo Mateus Ma
Publié dans: Global Change Biology, 2022, ISSN 1365-2486
Éditeur: Wiley-Blackwell
DOI: 10.1111/gcb.16150

Snow depth drives habitat selection by overwintering birds in built‐up areas, farmlands and forests

Auteurs: Purabi Deshpande; Aleksi Lehikoinen; Rose Thorogood; Petteri Lehikoinen
Publié dans: Journal of Biogeography, Numéro 4, 2022, Page(s) 630-639, ISSN 0305-0270
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/jbi.14326

Recommendations for quantitative uncertainty consideration in ecology and evolution

Auteurs: Emily G. Simmonds; Kwaku P. Adjei; Benjamin Cretois; Lisa Dickel; Ricardo González-Gil; Jack H. Laverick; Caitlin P. Mandeville; Elizabeth G. Mandeville; Otso Ovaskainen; Jorge Sicacha-Parada; Emma S. Skarstein; Bob O'Hara
Publié dans: Trends in Ecology and Evolution, Numéro Volume 39, ISSUE 4, 2023, Page(s) 328-337, ISSN 1872-8383
Éditeur: Cell Press
DOI: 10.1016/j.tree.2023.10.012

Site-specific length-biomass relationships of arctic arthropod families are critical for accurate ecological inferences

Auteurs: Versluijs TSL, Zhemchuzhnikov MK, Kutcherov D, Roslin T, Martin Schmidt N, van Gils JA, Reneerkens J
Publié dans: PeerJ, Numéro 11, 2023, ISSN 2167-8359
Éditeur: PeerJ
DOI: 10.7717/peerj.15943

Domain‐specific neural networks improve automated bird sound recognition already with small amount of local data

Auteurs: Patrik Lauha; Panu Somervuo; Petteri Lehikoinen; Lisa Geres; Tobias Richter; Sebastian Seibold; Otso Ovaskainen
Publié dans: Methods in Ecology and Evolution, Numéro 13 (12), 2022, Page(s) 2799–2810, ISSN 2041-210X
Éditeur: John Wiley and Sons Inc.
DOI: 10.1111/2041-210x.14003

Spatial predictions on physically constrained domains: Applications to Arctic sea salinity data

Auteurs: Jin, Bora; Herring, Amy H.; Dunson, David
Publié dans: The Annals of Applied Statistics, Numéro VOL. 18, NO. 2, 2024, Page(s) 1596-1617, ISSN 1932-6157
Éditeur: Institute of Mathematical Statistics
DOI: 10.48550/arxiv.2210.03913

Stable pollination service in a generalist high Arctic community despite the warming climate

Auteurs: Cirtwill, Alyssa R; Kaartinen, Riikka; Rasmussen, Claus; Redr, Deanne; Wirta, Helena; Olesen, Jens M; Tiusanen, Mikko; Ballantyne, Gavin; Cunnold, Helen; Stone, Graham N; Schmidt, Niels Martin; Roslin, Tomas
Publié dans: Ecological Monographs, Numéro Volume 93, Numéro 1, 2022, ISSN 1557-7015
Éditeur: Wiley Periodicals LLC
DOI: 10.1002/ecm.1551

Dimension-Grouped Mixed Membership Models for Multivariate Categorical Data

Auteurs: Gu, Yuqi; Erosheva, Elena A.; Xu, Gongjun; Dunson, David B.
Publié dans: Journal of Machine Learning Research, Numéro 24 (88), 2023, Page(s) 1-49, ISSN 1532-4435
Éditeur: MIT Press

Bayesian semiparametric long memory models for discretized event data

Auteurs: Antik Chakraborty, Otso Ovaskainen, David B. Dunson
Publié dans: The Annals of Applied Statistics, Numéro 16 (3), 2022, Page(s) 1380 - 1399, ISSN 1932-6157
Éditeur: Institute of Mathematical Statistics
DOI: 10.1214/21-aoas1546

Reconstructing the ecosystem context of a species: Honey-borne DNA reveals the roles of the honeybee

Auteurs: Helena Kristiina Wirta; Mohammad Bahram; Kirsten Miller; Tomas Roslin; Eero Vesterinen
Publié dans: PLoS ONE, Numéro Vol 17, Iss 7, 2022, Page(s) p e0268250, ISSN 1932-6203
Éditeur: Public Library of Science
DOI: 10.1371/journal.pone.0268250

Consistent imprints of elevation, soil temperature and moisture on plant and arthropod communities across two subarctic landscapes

Auteurs: Pablo Peña-Aguilera, Niels M. Schmidt, Lærke Stewart, Bastien Parisy, René van der Wal, Ly Lindman, Eero J. Vesterinen, Ilya M. D. Maclean, Tuomas Kankaanpää, Helena Wirta, Tomas Roslin
Publié dans: Insect Conservation and Diversity, Numéro 16 (5), 2023, Page(s) 684–700, ISSN 1752-4598
Éditeur: Wiley
DOI: 10.1111/icad.12667

High‐resolution <scp>3D</scp> forest structure explains ecomorphological trait variation in assemblages of saproxylic beetles

Auteurs: Lukas Drag; Ryan C. Burner; Jörg G. Stephan; Tone Birkemoe; Inken Doerfler; Martin M. Gossner; Paul Magdon; Otso Ovaskainen; Mária Potterf; Peter Schall; Tord Snäll; Anne Sverdrup‐Thygeson; Wolfgang Weisser; Jörg Müller
Publié dans: Functional Ecology, Numéro 37 (1), 2023, Page(s) 150–161, ISSN 1365-2435
Éditeur: John Wiley & Sons Ltd
DOI: 10.1111/1365-2435.14188

Evaluating the predictive performance of presence–absence models: Why can the same model appear excellent or poor?

Auteurs: Nerea Abrego; Otso Ovaskainen
Publié dans: Ecology and Evolution, Numéro 13 (12), 2023, ISSN 2045-7758
Éditeur: John Wiley and Sons Ltd
DOI: 10.1002/ece3.10784

Phenological shifts of abiotic events, producers and consumers across a continent

Auteurs: Tomas Roslin, Laura Antão, Maria Hällfors, Evgeniy Meyke, Coong Lo, Gleb Tikhonov, Maria del Mar Delgado, Eliezer Gurarie, Marina Abadonova, Ozodbek Abduraimov, Olga Adrianova, Tatiana Akimova, Muzhigit Akkiev, Aleksandr Ananin, Elena Andreeva, Natalia Andriychuk, Maxim Antipin, Konstantin Arzamascev, Svetlana Babina, Miroslav Babushkin, Oleg Bakin, Anna Barabancova, Inna Basilskaja, Nina Belova
Publié dans: Nature Climate Change, 2021, ISSN 1758-678X
Éditeur: Nature Publishing Group
DOI: 10.1038/s41558-020-00967-7

Ecological signals of arctic plant-microbe associations are consistent across eDNA and vegetation surveys

Auteurs: Bastien Parisy; Niels M. Schmidt; Helena Wirta; Laerke Stewart; Loic Pellissier; William E. Holben; Sam Pannoni; Panu Somervuo; Mirkka M. Jones; Jukka Siren; Eero Vesterinen; Otso Ovaskainen; Tomas Roslin
Publié dans: Metabarcoding and Metagenomics, Numéro 7, 2023, Page(s) 155-193, ISSN 2534-9708
Éditeur: Pensoft Publishers
DOI: 10.3897/mbmg.7.99979

Connecting the multiple dimensions of global soil fungal diversity

Auteurs: Vladimir Mikryukov; Olesya Dulya; Alexander Zizka; Mohammad Bahram; Niloufar Hagh-Doust; Sten Anslan; Oleh Prylutskyi; Manuel Delgado-Baquerizo; Fernando T. Maestre; Henrik Nilsson; Jaan Pärn; Maarja Öpik; Mari Moora; Martin Zobel; Mikk Espenberg; Ülo Mander; Abdul Nasir Khalid; Adriana Corrales; Ahto Agan; Aída-M. Vasco-Palacios; Alessandro Saitta; Andrea Rinaldi; Annemieke Verbeken; Bobby Su
Publié dans: Science Advances, Numéro Vol 9, Numéro 48, 2023, ISSN 2375-2548
Éditeur: Science
DOI: 10.1126/sciadv.adj8016

What makes a good pollinator? Abundant and specialised insects with long flight periods transport the most strawberry pollen

Auteurs: Villa-Galaviz, E., Cirtwill, A. R., Gibson, R., Timberlake, T., Roslin, T., & Memmott, J.
Publié dans: Ecological Solutions and Evidence, Numéro 4 (3), 2023, ISSN 2688-8319
Éditeur: John Wiley & Sons Ltd
DOI: 10.1002/2688-8319.12253

A Joint MLE Approach to Large-Scale Structured Latent Attribute Analysis

Auteurs: Yuqi Gu; Gongjun Xu
Publié dans: Journal of the American Statistical Association, Numéro 2, 2021, ISSN 0162-1459
Éditeur: American Statistical Association
DOI: 10.1080/01621459.2021.1955689

Food webs coupled in space: Consumer foraging movement affects both stocks and fluxes

Auteurs: Kate L. Wootton; Alva Curtsdotter; Riccardo Bommarco; Tomas Roslin; Tomas Jonsson
Publié dans: Ecology, Numéro 104 (8), 2023, ISSN 0012-9658
Éditeur: Ecological Society of America

Global arthropod beta-diversity is spatially and temporally structured by latitude

Auteurs: Seymour, M., Roslin, T., deWaard, J.R., Perez, K.H.J. , D'Souza, M.L., Ratnasingham, S., Ashfaq, M., Levesque-Beaudin, V., Blagoev, G.A., Bukowski, B., Cale, P., Crosbie, D., Decaëns, T., deWaard, S.L., Ekrem, T., El-Ansary, H.O., Ondo, F.E., Fraser, D., Geiger, M.F., Hajibabaei, M., Hallwachs, W., Hanisch, P.E., Hausmann, A., Heath, M., Hogg, I.D., Janzen, D.H., Kinnaird, M., Kohn, J.R., Larriv
Publié dans: Communications Biology, Numéro 7, 2024, ISSN 2399-3642
Éditeur: Springer Nature
DOI: 10.1038/s42003-024-06199-1

Species distributions models may predict accurately future distributions but poorly how distributions change : A critical perspective on model validation

Auteurs: Sirke Piirainen; Aleksi Lehikoinen; Magne Husby; John Atle Kålås; Åke Lindström; Otso Ovaskainen
Publié dans: Diversity and Distributions: A Journal of Conservation Biogeography, Numéro 29 (5), 2023, Page(s) 654–665, ISSN 1472-4642
Éditeur: Blackwell
DOI: 10.1111/ddi.13687

Spatial cumulant models enable spatially informed treatment strategies and analysis of local interactions in cancer systems

Auteurs: Sara Hamis; Panu Somervuo; J. Arvid Ågren; Dagim Shiferaw Tadele; Juha Kesseli; Jacob G. Scott; Matti Nykter; Philip Gerlee; Dmitri Finkelshtein; Otso Ovaskainen
Publié dans: Journal of Mathematical Biology, Numéro Volume 86, article number 68, 2023, ISSN 1432-1416
Éditeur: Springer

Global patterns in endemicity and vulnerability of soil fungi

Auteurs: Leho Tedersoo, Vladimir Mikryukov, Alexander Zizka, Mohammad Bahram, Niloufar Hagh-Doust, Sten Anslan, Oleh Prylutskyi, Manuel Delgado-Baquerizo, Fernando T. Maestre, Jaan Pärn, Maarja Öpik, Mari Moora, Martin Zobel, Mikk Espenberg, Ülo Mander, Abdul Nasir Khalid, Adriana Corrales, Ahto Agan, Aída-M. Vasco-Palacios, Alessandro Saitta, Andrea C. Rinaldi, Annemieke Verbeken,
Publié dans: Global Change Biology, Numéro 28, 2022, Page(s) 6696–6710, ISSN 1365-2486
Éditeur: John Wiley & Sons Ltd.
DOI: 10.1111/gcb.16398

Mixed effects of a national protected area network on terrestrial and freshwater biodiversity

Auteurs: Santangeli, A., Weigel, B., Antão, L., Kaarlejärvi, E., Hällfors, M., Lehikoinen, A., Lindén, A., Salemaa, M., Tonteri, T., Merilä, P., Vuorio, K., Ovaskainen, O., Vanhatalo, J., Roslin. T. and Saastamoinen, M.
Publié dans: Nature Communications, Numéro 14, 2023, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-023-41073-4

A case study on joint species distribution modelling with bird atlas data: Revealing limits to species' niches

Auteurs: Seoane Pinilla, Javier; Estrada, Alba; Jones, Mirkka M.; Ovaskainen, Otso
Publié dans: Ecological Informatics, Numéro 77, 2023, ISSN 1878-0512
Éditeur: Elsevier B.V.
DOI: 10.1016/j.ecoinf.2023.102202

Generalized infinite factorization models

Auteurs: L Schiavon, A Canale, D B Dunson
Publié dans: Biometrika, 2022, ISSN 1464-3510
Éditeur: Oxford University Press on behalf of the Biometrika Trust
DOI: 10.1093/biomet/asab056

Inferring taxonomic placement from DNA barcoding allowing discovery of new taxa

Auteurs: Zito, Alessandro; Rigon, Tommaso; Dunson, David B.
Publié dans: Methods in Ecology and Evolution, Numéro Volume 14, Numéro 2, 2022, Page(s) 529-542, ISSN 2041-210X
Éditeur: John Wiley and Sons Inc.
DOI: 10.1111/2041-210x.14009

Natural deadwood hosts more diverse pioneering wood‐inhabiting fungal communities than restored deadwood

Auteurs: Sonja Saine; Reijo Penttilä; Brendan Furneaux; Norman Monkhouse; Evgeny V. Zakharov; Otso Ovaskainen; Nerea Abrego
Publié dans: Restoration Ecology, Numéro Volume 32, Numéro 1, 2024, ISSN 1526-100X
Éditeur: Wiley
DOI: 10.1111/rec.14056

The relationships between urbanization and bird functional traits across the streetscape

Auteurs: João Carlos Pena; Otso Ovaskainen; Ian MacGregor-Fors; Camila Palhares Teixeira; Milton Cezar Ribeiro
Publié dans: Landscape and Urban Planning, Numéro Volume 232, 2023, ISSN 0169-2046
Éditeur: Elsevier BV
DOI: 10.1016/j.landurbplan.2023.104685

Emerging Directions in Bayesian Computation

Auteurs: Steven Winter, Trevor Campbell, Lizhen Lin, Sanvesh Srivastava, David B. Dunson
Publié dans: Statistical Science, Numéro 39 (1), 2024, Page(s) 62-89, ISSN 2168-8745
Éditeur: Institute of Mathematical Statistics
DOI: 10.1214/23-sts919

The legacy of human use in Amazonian palm communities along environmental and accessibility gradients

Auteurs: Gabriela Zuquim; Mirkka M. Jones; Otso Ovaskainen; William Trujillo; Henrik Balslev
Publié dans: Global Ecology and Biogeography, Numéro vol. 32, no. 6, 2023, Page(s) 881-892, ISSN 1466-8238
Éditeur: John Wiley & Sons Ltd.
DOI: 10.1111/geb.13667

Dung beetle community patterns in Western Europe: responses of Scarabaeinae to landscape and environmental filtering

Auteurs: Camila Leandro; Mirkka Jones; William Perrin; Pierre Jay-Robert; Otso Ovaskainen
Publié dans: Landscape Ecology, Numéro 38, 2023, Page(s) 2323-2338, ISSN 1572-9761
Éditeur: Springer
DOI: 10.1007/s10980-023-01711-0

Climate change reshuffles northern species within their niches

Auteurs: Laura H. Antão; Benjamin Weigel; Giovanni Strona; Maria Hällfors; Elina Kaarlejärvi; Tad Dallas; Øystein H. Opedal; Janne Heliölä; Heikki Henttonen; Otso Huitu; Erkki Korpimäki; Mikko Kuussaari; Aleksi Lehikoinen; Reima Leinonen; Andreas Lindén; Päivi Merilä; Hannu Pietiäinen; Juha Pöyry; Maija Salemaa; Tiina Tonteri; Kristiina Vuorio; Otso Ovaskainen; Marjo Saastamoinen; Jarno Vanhata
Publié dans: Nature Climate Change, Numéro 12, 2022, Page(s) 587–592, ISSN 1758-6798
Éditeur: Springer Nature Limited
DOI: 10.1038/s41558-022-01381-x

A novel model to accurately predict continental-scale timing of forest green-up

Auteurs: N. Neupane; M. Peruzzi; A. Arab; S.J. Mayor; J.C. Withey; L. Ries; A.O. Finley
Publié dans: International Journal of Applied Earth Observation and Geoinformation, Numéro 108, 2022, ISSN 1872-826X
Éditeur: Elsevier BV
DOI: 10.1016/j.jag.2022.102747

Different currencies for calculating resource phenology result in opposite inferences about trophic mismatches

Auteurs: Versluijs Tom S. L., Zhemchuzhnikov Mikhail K., Kutcherov Dmitry, Roslin Tomas, Schmidt Niels Martin, van Gils Jan A., Reneerkens Jeroen
Publié dans: Proc. R. Soc. B, Numéro Volume 291, Numéro 2019, 2024, ISSN 1471-2954
Éditeur: Royal Society
DOI: 10.1098/rspb.2023.1785

Landscape composition and pollinator traits interact to influence pollination success in an individual-based model

Auteurs: Kortsch, Susanne; Cirtwill, Alyssa R. R.; Timberlake, Thomas; Memmott, Jane; Kendall, Liam; Roslin, Tomas; Strona, Giovanni
Publié dans: Functional Ecology, Numéro Volume 37, Numéro 7, 2023, Page(s) 2056-2071, ISSN 1365-2435
Éditeur: John Wiley & Sons Ltd
DOI: 10.1111/1365-2435.14353

Flower-visitor and pollen-load data provide complementary insight into species and individual network roles

Auteurs: Cirtwill, A.R., Wirta, H., Kaartinen, R., Ballantyne, G., Stone, G.N., Cunnold, H., Tiusanen, M., Roslin, T.
Publié dans: Oikos, Numéro Volume 2024, Numéro 4, 2024, ISSN 1600-0706
Éditeur: John Wiley & Sons Ltd
DOI: 10.1111/oik.10301

Macrosystem community change in lake phytoplankton and its implications for diversity and function

Auteurs: Benjamin Weigel; Niina Kotamäki; Olli Malve; Kristiina Vuorio; Otso Ovaskainen
Publié dans: Global Ecology and Biogeography, Numéro 32, 2022, Page(s) 295-309, ISSN 1466-8238
Éditeur: John Wiley & Sons Ltd

Graph Based Gaussian Processes on Restricted Domains

Auteurs: David B. Dunson; Hau‐Tieng Wu; Nan Wu
Publié dans: Journal of the Royal Statistical Society, Series B (Statistical Methodology), Numéro 84, 2021, ISSN 1369-7412
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/rssb.12486

Spatiotemporal variation in the negative effect of neighbourhood crowding on stem growth

Auteurs: Zhang, H., Ovaskainen, O., Chi, X., Guo, Q. and Tang, Z
Publié dans: Journal of Ecology, Numéro 112, 2024, Page(s) 1140–1149, ISSN 1365-2745
Éditeur: British Ecological Society
DOI: 10.1111/1365-2745.14291

Local eukaryotic and bacterial stream community assembly is shaped by regional land use effects

Auteurs: Benjamin Weigel; Caio Graco-Roza; Jenni Hultman; Virpi Pajunen; Anette Teittinen; Maria Kuzmina; Evgeny V Zakharov; Janne Soininen; Otso Ovaskainen
Publié dans: ISME Communications, Numéro Volume 3, Numéro 1, 2023, ISSN 2730-6151
Éditeur: Springer Nature
DOI: 10.1038/s43705-023-00272-2

Increasing protected area coverage mitigates climate-driven community changes

Auteurs: Petteri Lehikoinen, Maria Tiusanen, Andrea Santangeli, Ari Rajasärkkä, Kim Jaatinen, Jari Valkama, Raimo Virkkala, Aleksi Lehikoinen
Publié dans: Biological Conservation, 2021, ISSN 0006-3207
Éditeur: Elsevier BV
DOI: 10.1016/j.biocon.2020.108892

PROTAX-GPU: a scalable probabilistic taxonomic classification system for DNA barcodes

Auteurs: Li Roy, Ratnasingham Sujeevan, Zarubiieva Iuliia, Somervuo Panu, Taylor Graham W.
Publié dans: Philosophical Transactions B, Numéro Volume 379, Numéro 1904, 2024, ISSN 1471-2970
Éditeur: Royal Society
DOI: 10.1098/rstb.2023.0124

Spatial meshing for general Bayesian multivariate models

Auteurs: Peruzzi, Michele; Dunson, David B.
Publié dans: Journal of Machine Learning Research, Numéro 25 (87), 2024, Page(s) 1−49, ISSN 1532-4435
Éditeur: MIT Press
DOI: 10.48550/arxiv.2201.10080

Ellipsoid Fitting With the Cayley Transform

Auteurs: Omar Melikechi; David B. Dunson
Publié dans: IEEE Transactions on Signal Processing, Numéro vol. 72, 2024, Page(s) 70-83, ISSN 1941-0476
Éditeur: IEEE
DOI: 10.1109/tsp.2023.3332560

Scavenging in the realm of senses: smell and vision drive recruitment at carcasses in Neotropical ecosystems

Auteurs: Lara Naves-Alegre; Zebensui Morales-Reyes; José Antonio Sánchez-Zapata; Esther Sebastián-González; Otso Ovaskainen
Publié dans: Proceedings of the Royal Society B, Numéro Volume 289, Numéro 1986, 2022, ISSN 1471-2954
Éditeur: Royal Society
DOI: 10.1098/rspb.2022.0843

Effects of density, species interactions, and environmental stochasticity on the dynamics of British bird communities

Auteurs: Lisa Sandal; Vidar Grøtan; Bernt‐Erik Sæther; Robert P. Freckleton; David G. Noble; Otso Ovaskainen
Publié dans: Ecology, Numéro Volume 103, Numéro 8, 2022, ISSN 1939-9170
Éditeur: Wiley Periodicals LLC
DOI: 10.1002/ecy.3731

A molecular-based identification resource for the arthropods of Finland

Auteurs: Roslin, T., Somervuo, P., Pentinsaari, M., Hebert, P., Agda, J., Ahlroth, P., Anttonen, P., Aspi, J., Blagoev, G., Blanco, S., Chan, D., Clayhills, T., deWaard, J., deWaard, S., Elliott, T., Elo, R., Haapala, S., Helve, E., Ilmonen, J., Hirvonen, P., Ho, C., Itämies, J., Ivanov, V., Jakovlev, J., Juslen, A., Jussila, R., Kahanpää, J., Kaila, L., Kaitila, J.-P., Kakko, A., Kakko, I., Karhu, A.,
Publié dans: Molecular Ecology Resources, 2022, ISSN 1755-0998
Éditeur: Wiley-Blackwell
DOI: 10.1111/1755-0998.13510

Spatial Multivariate Trees for Big Data Bayesian Regression

Auteurs: Michele Peruzzi, David B. Dunson
Publié dans: Journal of Machine Learning Research, Numéro 23, 2022, Page(s) 1-40, ISSN 1533-7928
Éditeur: MLR, Inc. and Microtome Publishing

Bayesian Pyramids: identifiable multilayer discrete latent structure models for discrete data

Auteurs: Yuqi Gu, David B Dunson
Publié dans: Journal of the Royal Statistical Society Series B: Statistical Methodology, Numéro Volume 85, Numéro 2, 2023, Page(s) 399–426, ISSN 1467-9868
Éditeur: Blackwell Publishing
DOI: 10.1093/jrsssb/qkad010

Ecological dependencies make remote reef fish communities most vulnerable to coral loss

Auteurs: Giovanni Strona; Pieter S. A. Beck; Mar Cabeza; Simone Fattorini; François Guilhaumon; Fiorenza Micheli; Simone Montano; Otso Ovaskainen; Serge Planes; Joseph A. Veech; Valeriano Parravicini
Publié dans: Nature Communications, Numéro 3, 2021, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-021-27440-z

Emerging technologies revolutionise insect ecology and monitoring

Auteurs: Roel van Klink; Tom August; Yves Bas; Paul Bodesheim; Aletta Bonn; Frode Fossøy; Toke T. Høye; Eelke Jongejans; Myles H.M. Menz; Andreia Miraldo; Tomas Roslin; Helen E. Roy; Ireneusz Ruczyński; Dmitry Schigel; Livia Schäffler; Julie K. Sheard; Cecilie Svenningsen; Georg F. Tschan; Jana Wäldchen; Vera M.A. Zizka; Jens Åström; Diana E. Bowler
Publié dans: Trends in Ecology & Evolution, Numéro Volume 37, ISSUE 10, 2022, Page(s) 872-885, ISSN 1872-8383
Éditeur: Elsevier Ltd
DOI: 10.1016/j.tree.2022.06.001

Contrasting effects of chronic anthropogenic disturbance on activity and species richness of insectivorous bats in neotropical dry forest

Auteurs: Meramo, K., Ovaskainen, O., Bernard, E., Silva, C. R., Laine, V. N. and Lilley, T. M.
Publié dans: Frontiers in Ecology and Evolution, Numéro 10, 2022, ISSN 2296-701X
Éditeur: Frontiers Media S.A.
DOI: 10.3389/fevo.2022.822415

Distance decay 2.0 – A global synthesis of taxonomic and functional turnover in ecological communities

Auteurs: Graco‐Roza, Caio; Aarnio, Sonja; Abrego, Nerea; Acosta, Alicia T. R.; Alahuhta, Janne; Altman, Jan; Angiolini, Claudia; Aroviita, Jukka; Attorre, Fabio; Baastrup‐Spohr, Lars; Barrera‐Alba, José J.; Belmaker, Jonathan; Biurrun, Idoia; Bonari, Gianmaria; Bruelheide, Helge; Burrascano, Sabina; Carboni, Marta; Cardoso, Pedro; Carvalho, José C.; Castaldelli, Giuseppe; Christensen, Morten; Corre
Publié dans: Global ecology and biogeography, Numéro Volume 31, Numéro 7, 2022, Page(s) 1399-1421, ISSN 1466-8238
Éditeur: John Wiley & Sons Ltd
DOI: 10.1111/geb.13513

Convergence of dominance and neglect in flying insect diversity

Auteurs: Amrita Srivathsan; Yuchen Ang; John M. Heraty; Wei Song Hwang; Wan F. A. Jusoh; Sujatha Narayanan Kutty; Jayanthi Puniamoorthy; Darren Yeo; Tomas Roslin; Rudolf Meier
Publié dans: Nature Ecology & Evolution, Numéro 7, 2023, Page(s) 1012–1021, ISSN 2397-334X
Éditeur: Nature Portfolio
DOI: 10.1038/s41559-023-02066-0

Highly scalable Bayesian geostatistical modeling via meshed Gaussian processes on partitioned domains

Auteurs: M Peruzzi, S Banerjee, AO Finley
Publié dans: Journal of the American Statistical Association, 2020, ISSN 1537-274X
Éditeur: Taylor & Francis on behalf of the American Statistical Association
DOI: 10.1080/01621459.2020.1833889

Bayesian Modeling of Sequential Discoveries

Auteurs: Alessandro Zito; Tommaso Rigon; Otso Ovaskainen; David B. Dunson
Publié dans: Journal of the American Statistical Association, Numéro 118 (544), 2022, Page(s) 2521–2532, ISSN 1537-274X
Éditeur: Taylor & Francis
DOI: 10.1080/01621459.2022.2060835

Novel community data in ecology - properties and prospects

Auteurs: Hartig, F., Abrego, N., Bush, A., Chase, J. M., Guillera-Arroita, G., Leibold, M. A., Ovaskainen, O., Pellissier, L., Pichler, M., Poggiato, G., Pollock, L., Si-Moussi, S., Thuiller, W., Viana, D. S, Warton, D., Zurell, D. and Yu, D. W.
Publié dans: Trends in Ecology & Evolution, Numéro 39 (3), 2024, Page(s) 280-293, ISSN 1872-8383
Éditeur: Elsevier Ltd
DOI: 10.1016/j.tree.2023.09.017

Nationally reported metrics can’t adequately guide transformative change in biodiversity policy

Auteurs: Sara Fraixedas, Tomas Roslin, Laura H. Antão, Juha Pöyry, Anna-Liisa Laine
Publié dans: Proceedings of the National Academy of Sciences, 2022, ISSN 1091-6490
Éditeur: United States National Academy of Sciences
DOI: 10.1073/pnas.2117299119

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