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Atlantic ECOsystems assessment, forecasting & sustainability


AtlantECO communication plan

A detailed strategy for the communication activities including description of branding channels and tools for communication targeted audiences and communication campaigns schedule and objectives

Reference catalogue of network reconstruction methods

This report will be accompanied by a Github package of statistical methods and machine learning computation pipelines for network construction and the reference database of known microbiome ecological interactions

AtlantECO Handbook of Standards and Best Practices Version 1

This deliverable provides standards and best practices developed in Task 41 about sampling protocols biobanking ABS compliance and sample analysis protocols Version 1 of this deliverable will be available on month 6 in time for WP9 to train partners and stakeholders involved in AtlantECOs sampling activities

Project Management Handbook

A description of project management processes and procedures including progress monitoring risk monitoring meeting and teleconferences schedules communication channels and tools and governance structure

AtlantECO environmental responsibility

A document describing the expected collective policies actions and behaviours to ensure responsibility of the consortium towards limiting environmental impact

AtlantECO Communication kit

Standard brand material including project introductory video template presentation poster flyers available in digital and print formats

AtlantECO Data Management Plan

Data Management Plan to be implemented and continuously updated throughout the project duration


Food web aggregation: effects on key positions

Author(s): Giacomuzzo, E., Jordán, F.
Published in: Oikos, 2021, ISSN 1600-0706
Publisher: Wiley-Blackwell
DOI: 10.1111/oik.08541

Ocean Lagrangian Trajectories (OLTraj): Lagrangian analysis for non-expert users

Author(s): Giorgio Dall'Olmo; Francesco Nencioli; Thomas Jackson; Robert J. W. Brewin; John A. Gittings; Dionysios E. Raitsos
Published in: Open Research Europe, 2021, ISSN 2732-5121
Publisher: F1000 Research Limited
DOI: 10.12688/openreseurope.14133.1

The European Nucleotide Archive in 2021.

Author(s): Carla Cummins; Alisha Ahamed; Raheela Aslam; Josephine Burgin; Rajkumar Devraj; Ossama Edbali; Dipayan Gupta; Peter W. Harrison; Muhammad Haseeb; Sam Holt; Talal Ibrahim; Eugene Ivanov; Suran Jayathilaka; Vishnukumar Balavenkataraman Kadhirvelu; Simon Kay; Manish Kumar; Ankur Lathi; Rasko Leinonen; Fábio Madeira; Nandana Madhusoodanan; Milena Mansurova; Colman O’Cathail; Matt Pearce; Stephane P
Published in: Nucleic Acids Research, 2022, ISSN 1362-4962
Publisher: Oxford University press
DOI: 10.1093/nar/gkab1051

Compound high-temperature and low-chlorophyll extremes in the ocean over the satellite period

Author(s): Le Grix, Natacha; Zscheischler, Jakob; Laufkötter, Charlotte; Rousseaux, Cecile S.; Frölicher, Thomas L.
Published in: Biogeosciences, 2021, ISSN 1726-4189
Publisher: Copernicus
DOI: 10.5194/bg-18-2119-2021

Major restructuring of marine plankton assemblages under global warming

Author(s): Fabio Benedetti, Meike Vogt, Urs Hofmann Elizondo, Damiano Righetti, Niklaus E. Zimmermann & Nicolas Gruber
Published in: nature communications, 2021, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-021-25385-x

Who Is Where in Marine Food Webs? A Trait-Based Analysis of Network Positions

Author(s): Anett Endrédi; Anett Endrédi; Katalin Patonai; Katalin Patonai; János Podani; Simone Libralato; Ferenc Jordán; Ferenc Jordán
Published in: Frontiers in Marine Science, 2021, ISSN 2296-7745
Publisher: Frontiers Media S.A.
DOI: 10.3389/fmars.2021.636042

Integrating environmental variability to broaden the research on coral responses to future ocean conditions

Author(s): Maren Ziegler; Maren Ziegler; Andrea Anton; Andrea Anton; Shannon G. Klein; Nils Rädecker; Nils Rädecker; Nils Rädecker; Nathan R. Geraldi; Sebastian Schmidt-Roach; Vincent Saderne; Peter J. Mumby; Maha J. Cziesielski; Cecilia Martin; Thomas L. Frölicher; Thomas L. Frölicher; John M. Pandolfi; David J. Suggett; Manuel Aranda; Carlos M. Duarte; Christian R. Voolstra; Christian R. Voolstra
Published in: Global Change Biology, 2021, ISSN 1365-2486
Publisher: Wiley-Blackwell
DOI: 10.1111/gcb.15840

Toward a Global Public Repository of Community Protocols to Encourage Best Practices in Biomolecular Ocean Observing and Research

Author(s): Robyn M. Samuel, Raissa Meyer, Pier Luigi Buttigieg, Neil Davies, Nicholas W. Jeffery, Christopher Meyer, Christina Pavloudi, Kathleen Johnson Pitz, Maxime Sweetlove, Susanna Theroux, Jodie van de Kamp and Alison Watts
Published in: Frontiers in Marine Science, 2021, ISSN 2296-7745
Publisher: Frontiers Media S.A.
DOI: 10.3389/fmars.2021.758694

Environmental vulnerability of the global ocean plankton community interactome

Author(s): Samuel Chaffron; Erwan Delage; Marko Budinich; Damien Vintache; Nelly Henry; Charlotte Nef; Mathieu Ardyna; Mathieu Ardyna; Ahmed A. Zayed; Pedro C. Junger; Pierre E. Galand; Connie Lovejoy; Alison E. Murray; Hugo Sarmento; Silvia G. Acinas; Marcel Babin; Marcel Babin; Daniele Iudicone; Olivier Jaillon; Eric Karsenti; Patrick Wincker; Lee Karp-Boss; Matthew B. Sullivan; Chris Bowler; C. de Vargas;
Published in: Science Advances, 2021, ISSN 2375-2548
Publisher: American Association for the Advancement of science
DOI: 10.1126/sciadv.abg1921

Macroscale patterns of oceanic zooplankton composition and size structure

Author(s): Manoela C. Brandão, Fabio Benedetti, Séverine Martini, Yawouvi Dodji Soviadan, Jean-Olivier Irisson, Jean-Baptiste Romagnan, Amanda Elineau, Corinne Desnos, Laëtitia Jalabert, Andrea S. Freire, Marc Picheral, Lionel Guidi, Gabriel Gorsky, Chris Bowler, Lee Karp-Boss, Nicolas Henry, Colomban de Vargas, Matthew B. Sullivan, Tara Oceans Consortium Coordinators, Lars Stemmann & Fabien Lombard
Published in: Scientific Reports, 2021, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-021-94615-5

Restructuring of plankton genomic biogeography in the surface ocean under climate change

Author(s): Frémont, P., Gehlen, M., Vrac, M., Leconte, J., Delmont, T. O., Wincker, P., Iudicone, D.and Jaillon, O.
Published in: Nature Climate Change, 2022, ISSN 1758-6798
Publisher: Springer Nature Limited
DOI: 10.1038/s41558-022-01314-8

Contribution of genome-scale metabolic modelling to niche theory

Author(s): Antoine Régimbeau, Marko Budinich, Abdelhalim Larhlimi, Juan José Pierella Karlusich, Olivier Aumont, Laurent Memery, Chris Bowler, Damien Eveillard
Published in: Ecology Letters, 2022, Page(s) 1352-1364, ISSN 1461-0248
Publisher: Wiley-Blackwell
DOI: 10.1111/ele.13954

Uncertainties of particulate organic carbon concentrations in the mesopelagic zone of the Atlantic ocean

Author(s): Paul Strubinger Sandoval; Giorgio Dall'Olmo; Keith Haines; Rafael Rasse; Jelizaveta Ross; Jelizaveta Ross
Published in: Open Research Europe, 2021, ISSN 2732-5121
Publisher: F1000 Research Limited
DOI: 10.12688/openreseurope.13395.1

The European Nucleotide Archive in 2020.

Author(s): Peter W. Harrison; Alisha Ahamed; Raheela Aslam; Blaise T. F. Alako; Josephine Burgin; Nicola Buso; Mélanie Courtot; Jun Fan; Dipayan Gupta; Muhammad Haseeb; Sam Holt; Talal Ibrahim; Eugene Ivanov; Suran Jayathilaka; Vishnukumar Balavenkataraman Kadhirvelu; Manish Kumar; Rodrigo Lopez; Simon Kay; Rasko Leinonen; Xin Liu; Colman O’Cathail; Amir Pakseresht; Youngmi Park; Stephane Pesant; Nadim Ra
Published in: Nucleic Acids Research, 2021, ISSN 1362-4962
Publisher: Oxford University Press
DOI: 10.1093/nar/gkaa1028

Patterns of mesozooplankton community composition and vertical fluxes in the global ocean

Author(s): Yawouvi Dodji Soviadan, View ORCID ProfileFabio Benedetti, View ORCID ProfileManoela C. Brandão, View ORCID ProfileSakina-Dorothée Ayata, View ORCID ProfileJean-Olivier Irisson, View ORCID ProfileJean Louis Jamet, Rainer Kiko, Fabien Lombard, Kissao Gnandi, Lars Stemmann
Published in: Progress in Oceanography, 2022, ISSN 0079-6611
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.pocean.2021.102717

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