Atlantic ECOsystems assessment, forecasting & sustainability

Informations projet

AtlantECO

N° de convention de subvention: 862923

DOI

10.3030/862923

Projet clôturé

Date de signature de la CE 30 Avril 2020

Date de début 1 Septembre 2020

Date de fin 28 Février 2026

Financé au titre de

• SOCIETAL CHALLENGES - Food security, sustainable agriculture and forestry, marine, maritime and inland water research, and the bioeconomy

Coût total

€ 10 925 660,38

Contribution de l’UE

€ 10 925 660,13

Coordonné par

STAZIONE ZOOLOGICA ANTON DOHRN
Italy

CORDIS fournit des liens vers les livrables publics et les publications des projets HORIZON.

Les liens vers les livrables et les publications des projets du 7e PC, ainsi que les liens vers certains types de résultats spécifiques tels que les jeux de données et les logiciels, sont récupérés dynamiquement sur OpenAIRE .

Livrables

Other (4)

Dataset of ocean reanalysis and hindcast simulation version 2

Dataset of ocean reanalysis and hindcast simulation at 1⁄4 and 1/16 degrees resolution for the Atlantic Ocean based on version 1 and with the addition of data for the Southern Benguela

Dataset of ocean reanalysis and hindcast simulation version 1

Dataset of ocean reanalysis and hindcast simulation at 1⁄4 and 1/16 degrees resolution for the Atlantic Ocean.

AtlantECO-MAPS 1

Spatial maps of ecosystem community structure/networks, and functional traits and genomics from existing observations.

AtlantECO-BASE 1

Spatial maps of microbiome, plastics and the plastisphere, including where applicable, presence-absence, abundance, biovolumes and biomass based on existing obs. p-a, ab

Documents, reports (8)

AtlantECO communication plan

A detailed strategy for the communication activities including description of branding channels and tools for communication targeted audiences and communication campaigns schedule and objectives

Reference catalogue of network reconstruction methods

This report will be accompanied by a Github package of statistical methods and machine learning computation pipelines for network construction and the reference database of known microbiome ecological interactions

Report on the All-Atlantic interactome

This report will be accompanied by a software package on the integration of network analytical techniques.

AtlantECO Handbook of Standards and Best Practices Version 2

Update on version 1, the document provides standards and best practices developed in Task 4.1 about sampling protocols, biobanking, ABS compliance and sample analysis protocols. Each version will be published in open access at Zenodo.

Report on advanced observations version 1

This deliverable reports on AtlantECO’s initial sampling activities carried out in Task 4.2, including a detailed inventory of all samples collected, a summary of analyses performed to date, and links to all data sets deposited in open access.

AtlantECO Handbook of Standards and Best Practices Version 1

This deliverable provides standards and best practices developed in Task 41 about sampling protocols biobanking ABS compliance and sample analysis protocols Version 1 of this deliverable will be available on month 6 in time for WP9 to train partners and stakeholders involved in AtlantECOs sampling activities

Project Management Handbook

A description of project management processes and procedures including progress monitoring risk monitoring meeting and teleconferences schedules communication channels and tools and governance structure

AtlantECO environmental responsibility

A document describing the expected collective policies actions and behaviours to ensure responsibility of the consortium towards limiting environmental impact

Websites, patent fillings, videos etc. (1)

AtlantECO Communication kit

Standard brand material including project introductory video template presentation poster flyers available in digital and print formats

Open Research Data Pilot (1)

AtlantECO Data Management Plan

Data Management Plan to be implemented and continuously updated throughout the project duration

Publications

Peer reviewed articles (161)

Ultra‐Oligotrophic Waters Expansion in the North Atlantic Subtropical Gyre Revealed by 21 Years of Satellite Observations

Auteurs: Leonelli, F. E.; Bellacicco, M.; Pitarch, J.; Organelli, E.; Nardelli B, Buongiorno; de Toma, V.; Cammarota, C.; Marullo, S; Null,; Santoleri, R.
Publié dans: Geophysical research letters, 2022, ISSN 0094-8276
Éditeur: American Geophysical Union
DOI: 10.1029/2021gl096965

Linking satellites to genes with machine learning to estimate phytoplankton community structure from space

Auteurs: Roy El Hourany, Juan Pierella Karlusich, Lucie Zinger, Hubert Loisel, Marina Levy, Chris Bowler
Publié dans: Ocean Science, Numéro 20, 2024, Page(s) 217-239, ISSN 1812-0792
Éditeur: Copernicus GmbH
DOI: 10.5194/os-20-217-2024

Proposed synergies between oceanography and metrology

Auteurs: Susan E. Hartman, Andrew R. Gates, Patricia Lopez-Garcia, Roberto Bozzano, Eric Delory, Paolo Favali, Dominique Lefevre, Laure Chirurgien, Sara Pensieri, George Petihakis, Rajesh Nair, Silvana Neves, Juan José Dañobeitia, Florence Salvetat, Marc Le Menn, Jukka Seppälä, Katrin Schroeder, Jaume Piera
Publié dans: Frontiers in Marine Science, Numéro 10, 2023, ISSN 2296-7745
Éditeur: Frontiers Media SA
DOI: 10.3389/fmars.2023.1192030

A global marine particle size distribution dataset obtained with the Underwater Vision Profiler 5

Auteurs: Rainer Kiko, Marc Picheral, David Antoine, Marcel Babin, Léo Berline, Tristan Biard, Emmanuel Boss, Peter Brandt, Francois Carlotti, Svenja Christiansen, Laurent Coppola, Leandro de la Cruz, Emilie Diamond-Riquier, Xavier Durrieu de Madron, Amanda Elineau, Gabriel Gorsky, Lionel Guidi, Helena Hauss, Jean-Olivier Irisson, Lee Karp-Boss, Johannes Karstensen, Dong-gyun Kim, Rachel M. Lekanoff, Fabie
Publié dans: Biogeosciences, 2025, ISSN 1726-4189
Éditeur: Copernicus
DOI: 10.5194/essd-2022-51

Modelling drift of cold-stunned Kemp's ridley turtles stranding on the Dutch coast

Auteurs: Darshika Manral, Ilse Bos, Mark de Boer, Erik van Sebille
Publié dans: Open Research Europe, Numéro 4, 2024, Page(s) 41, ISSN 2732-5121
Éditeur: F1000 Research Ltd
DOI: 10.12688/openreseurope.16913.2

An exceptional phytoplankton bloom in the southeast Madagascar Sea driven by African dust deposition

Auteurs: John A Gittings, Giorgio Dall’Olmo, Weiyi Tang, Joan Llort, Fatma Jebri, Eleni Livanou, Francesco Nencioli, Sofia Darmaraki, Iason Theodorou, Robert J W Brewin, Meric Srokosz, Nicolas Cassar, Dionysios E Raitsos
Publié dans: PNAS Nexus, Numéro 3, 2024, ISSN 2752-6542
Éditeur: Oxford University Press (OUP)
DOI: 10.1093/pnasnexus/pgae386

Global mass of buoyant marine plastics dominated by large long-lived debris

Auteurs: Mikael L. A. Kaandorp, Delphine Lobelle, Christian Kehl, Henk A. Dijkstra, Erik van Sebille
Publié dans: Nature Geoscience, Numéro 16, 2023, Page(s) 689-694, ISSN 1752-0894
Éditeur: Nature Publishing Group
DOI: 10.1038/s41561-023-01216-0

High-quality metagenomic-assembled genomes from sea ice and seawater of the Southern Ocean

Auteurs: Z. M. Buthelezi, R. E. Pierneef, O. K. I. Bezuidt, T. P. Makhalanyane
Publié dans: Microbiology Resource Announcements, Numéro 14, 2025, ISSN 2576-098X
Éditeur: American Society for Microbiology
DOI: 10.1128/mra.01298-24

Observed Regional Impacts of Marine Heatwaves on Sea‐Air CO ₂ Exchange

Auteurs: Catherine Li, Friedrich A. Burger, Christoph C. Raible, Thomas L. Frölicher
Publié dans: Geophysical Research Letters, Numéro 51, 2025, ISSN 0094-8276
Éditeur: American Geophysical Union
DOI: 10.1029/2024gl110379

MITE: the Minimum Information about a Tailoring Enzyme database for capturing specialized metabolite biosynthesis

Auteurs: Adriano Rutz, Daniel Probst, César Aguilar, Daniel Y Akiyama, Fabrizio Alberti, Hannah E Augustijn, Nicole E Avalon, Christine Beemelmanns, Hellen Bertoletti Barbieri, Friederike Biermann, Alan J Bridge, Esteban Charria Girón, Russell Cox, Max Crüsemann, Paul M D’Agostino, Marc Feuermann, Jennifer Gerke, Karina Gutiérrez García, Jonathan E Holme, Ji-Yeon Hwang, Riccardo Iacovelli, Júlio C
Publié dans: Nucleic Acids Research, Numéro 54, 2026, Page(s) D635-D642, ISSN 0305-1048
Éditeur: Oxford University Press
DOI: 10.1093/nar/gkaf969

Extreme and compound ocean events are key drivers of projected low pelagic fish biomass

Auteurs: Natacha Le Grix, William L. Cheung, Gabriel Reygondeau, Jakob Zscheischler, Thomas L. Frölicher
Publié dans: Global Change Biology, 2023, ISSN 1365-2486
Éditeur: Wiley-Blackwell
DOI: 10.1111/gcb.16968

High concentrations of plastic hidden beneath the surface of the Atlantic Ocean

Auteurs: Katsiaryna Pabortsava, Richard S. Lampitt
Publié dans: Nature Communications, Numéro 11, 2022, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-020-17932-9

The European Nucleotide Archive in 2024

Auteurs: Colman O’Cathail, Alisha Ahamed, Josephine Burgin, Carla Cummins, Rajkumar Devaraj, Khadim Gueye, Dipayan Gupta, Vikas Gupta, Muhammad Haseeb, Maira Ihsan, Eugene Ivanov, Suran Jayathilaka, Vishnukumar Kadhirvelu, Manish Kumar, Ankur Lathi, Rasko Leinonen, Jasmine McKinnon, Lili Meszaros, Joana Pauperio, Stephane Pesant, Nadim Rahman, Gabriele Rinck, Sandeep Selvakumar, Swati Suman, Yanisa Sunth
Publié dans: Nucleic Acids Research, Numéro 53, 2025, Page(s) D49-D55, ISSN 0305-1048
Éditeur: Oxford University Press
DOI: 10.1093/nar/gkae975

Food web analysis shows an exacerbated dependence of zooplankton on detritus in oligotrophic systems due to ocean warming

Auteurs: Luca Russo, Matteo Loschi, Daniele Bellardini, Roberta Congestri, Michael W. Lomas, Simone Libralato, Domenico D’Alelio
Publié dans: Progress in Oceanography, Numéro 231, 2026, Page(s) 103389, ISSN 0079-6611
Éditeur: Pergamon Press Ltd.
DOI: 10.1016/j.pocean.2024.103389

Mistaking plastic for zooplankton: Risk assessment of plastic ingestion in the Mediterranean sea

Auteurs: S. Fabri-Ruiz, A. Baudena, F. Moullec, F. Lombard, J.-O. Irisson, M.L. Pedrotti
Publié dans: Science of the total environment, 2023, ISSN 0048-9697
Éditeur: Elsevier BV
DOI: 10.1016/j.scitotenv.2022.159011

Global distribution, diversity, and ecological niche of Picozoa, a widespread and enigmatic marine protist lineage

Auteurs: Paula Huber, Daniele De Angelis, Hugo Sarmento, Sebastian Metz, Caterina R. Giner, Colomban De Vargas, Luigi Maiorano, Ramon Massana, Ramiro Logares
Publié dans: Microbiome, Numéro 12, 2025, ISSN 2049-2618
Éditeur: Springer Science and Business Media LLC
DOI: 10.1186/s40168-024-01874-1

Global biogeography of the smallest plankton across ocean depths

Auteurs: Pedro C. Junger; Hugo Sarmento; Caterina. R. Giner; Mireia Mestre; Marta Sebastián; Xosé Anxelu G. Morán; Javier Arístegui; Susana Agustí; Carlos M. Duarte; Silvia G. Acinas; Ramon Massana; Josep M. Gasol; Ramiro Logares
Publié dans: Science advances, 2023, ISSN 2375-2548
Éditeur: American Association for the Advancement of Science
DOI: 10.1126/sciadv.adg9763

Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean

Auteurs: Marta Royo-Llonch, Pablo Sánchez, Clara Ruiz-González, Guillem Salazar, Carlos Pedrós-Alió, Marta Sebastián, Karine Labadie, Lucas Paoli, Federico M. Ibarbalz, Lucie Zinger, Benjamin Churcheward, Tara Oceans Coordinators, Samuel Chaffron, Damien Eveillard, Eric Karsenti, Shinichi Sunagawa, Patrick Wincker, Lee Karp-Boss, Chris Bowler & Silvia G. Acinas
Publié dans: nature microbiology, 2021, ISSN 2058-5276
Éditeur: Nature Publishing Group
DOI: 10.1038/s41564-021-00979-9

Compound marine heatwaves and ocean acidity extremes

Auteurs: Burger, F.A., Terhaar, J. & Frölicher, T.L.
Publié dans: nature communications, 2022, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-022-32120-7

Separation timescales of vertically migrating zooplankton and other (a)biotic materials in the Benguela system

Auteurs: Darshika Manral, Laura Gómez-Navarro, Michael Charles Denes, Doroteaciro Iovino, Pier Giuseppe Fogli, Simona Masina, Ismael Hernández-Carrasco, Linda Amaral - Zettler, Marcello Vichi, Erik Van Sebille
Publié dans: ESS OpenArchive, 2026, ISSN 0000-0000
Éditeur: NA
DOI: 10.22541/essoar.172372980.07264354/v1

Organization of planktonic Tintinnina assemblages in the Atlantic Ocean

Auteurs: Haibo Li; Glen A. Tarran; Giorgio Dall’Olmo; Andrew P. Rees; Michel Denis; Chaofeng Wang; Gérald Grégori; Yi Dong; Yuan Zhao; Wuchang Zhang; Tian Xiao
Publié dans: Frontiers in Marine Science, 2023, ISSN 2296-7745
Éditeur: Frontiers Media S.A.
DOI: 10.3389/fmars.2023.1082495

Monitoring and modelling marine zooplankton in a changing climate

Auteurs: Lavenia Ratnarajah, Rana Abu-Alhaija, Angus Atkinson, Sonia Batten, Nicholas J. Bax, Kim S. Bernard, Gabrielle Canonico, Astrid Cornils, Jason D. Everett, Maria Grigoratou, Nurul Huda Ahmad Ishak, David Johns, Fabien Lombard, Erik Muxagata, Clare Ostle, Sophie Pitois, Anthony J. Richardson, Katrin Schmidt, Lars Stemmann, Kerrie M. Swadling, Guang Yang & Lidia Yebra
Publié dans: nature communications, 2023, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-023-36241-5

Assessing cumulative risks to coastal and marine habitats under management and climate change scenarios: The case of northern Portugal

Auteurs: Jacinto Cunha, Michael Elliott, Sebastian Villasante, Stefano Balbi, Edna Cabecinha, Sandra Ramos
Publié dans: Ocean & Coastal Management, Numéro 268, 2026, Page(s) 107756, ISSN 0964-5691
Éditeur: Pergamon Press Ltd.
DOI: 10.1016/j.ocecoaman.2025.107756

Process controlling iron–manganese regulation of the Southern Ocean biological carbon pump

Auteurs: Prima Anugerahanti;Alessandro Tagliabue
Publié dans: Biology Letters, 2023, ISSN 1744-9561
Éditeur: The Royal Society

An advanced towed CTD chain for physical-biological high resolution in situ upper ocean measurements

Auteurs: Thomas Kock, Burkard Baschek, Florian Wobbe, Martina Heineke, Rolf Riethmueller, Stephan C. Deschner, Gerd Seidel, Paulo H. R. Calil
Publié dans: Frontiers in Marine Science, Numéro 10, 2023, ISSN 2296-7745
Éditeur: Frontiers Media SA
DOI: 10.3389/fmars.2023.1183061

Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems

Auteurs: Lombard, Fabien; Bourdin, Guillaume; Pesant, Stéphane; Agostini, Sylvain; Baudena, Alberto; Boissin, Emilie; Cassar, Nicolas; Clampitt, Megan; Conan, Pascal; Da Silva, Ophélie; Dimier, Céline; Douville, Eric; Elineau, Amanda; Fin, Jonathan; Flores, J. Michel; Ghiglione, Jean-François; Hume, Benjamin C.C.; Jalabert, Laetitia; John, Seth G.; Kelly, Rachel L.; Sunagawa, Shinichi; et al.
Publié dans: Scientific Data, 2023, ISSN 2052-4463
Éditeur: Nature Publishing Group
DOI: 10.1038/s41597-022-01757-w

Southern Ocean phytoplankton under climate change: a shifting balance of bottom-up and top-down control

Auteurs: Tianfei Xue, Jens Terhaar, A. E. Friederike Prowe, Thomas L. Frölicher, Andreas Oschlies, Ivy Frenger
Publié dans: Biogeosciences, Numéro 21, 2025, Page(s) 2473-2491, ISSN 1726-4189
Éditeur: Copernicus GmbH
DOI: 10.5194/bg-21-2473-2024

Metagenome-Assembled Genomes of Four Southern Ocean Archaea Harbor Multiple Genes Linked to Polyethylene Terephthalate and Polyhydroxybutyrate Plastic Degradation

Auteurs: Yvonne Marvellous Akpudo, Oliver K. Bezuidt, Thulani P. Makhalanyane
Publié dans: Microbiology Resource Announcements, Numéro 12, 2023, ISSN 2576-098X
Éditeur: American Society for Microbiology
DOI: 10.1128/mra.01098-22

A global overview of marine heatwaves in a changing climate

Auteurs: Antonietta Capotondi, Regina R. Rodrigues, Alex Sen Gupta, Jessica A. Benthuysen, Clara Deser, Thomas L. Frölicher, Nicole S. Lovenduski, Dillon J. Amaya, Natacha Le Grix, Tongtong Xu, Juliet Hermes, Neil J. Holbrook, Cristian Martinez-Villalobos, Simona Masina, Mathew Koll Roxy, Amandine Schaeffer, Robert W. Schlegel, Kathryn E. Smith, Chunzai Wang
Publié dans: Communications Earth & Environment, Numéro 5, 2024, ISSN 2662-4435
Éditeur: Springer Science and Business Media LLC
DOI: 10.1038/s43247-024-01806-9

MAGNETO: An Automated Workflow for Genome-Resolved Metagenomics

Auteurs: Benjamin Churcheward, Maxime Millet, Audrey Bihouée, Guillaume Fertin, Samuel Chaffron
Publié dans: mSystems, Numéro 7, 2024, ISSN 2379-5077
Éditeur: American Society for Microbiology
DOI: 10.1128/msystems.00432-22

Food web aggregation: effects on key positions

Auteurs: Giacomuzzo, E., Jordán, F.
Publié dans: Oikos, 2021, ISSN 1600-0706
Éditeur: Wiley-Blackwell
DOI: 10.1111/oik.08541

Non-cyanobacterial diazotrophs support the survival of marine microalgae in nitrogen-depleted environment

Auteurs: Udita Chandola, Marinna Gaudin, Camille Trottier, Louis-Josselin Lavier-Aydat, Eric Manirakiza, Samuel Menicot, Erik Jörg Fischer, Isabelle Louvet, Thomas Lacour, Timothée Chaumier, Atsuko Tanaka, Georg Pohnert, Samuel Chaffron, Leïla Tirichine
Publié dans: Genome Biology, Numéro 26, 2025, ISSN 1474-760X
Éditeur: Springer Science and Business Media LLC
DOI: 10.1186/s13059-025-03597-4

Conserved genetic markers reveal widespread diatom sexual reproduction in the global ocean

Auteurs: Gust Bilcke, Lucia Campese, Rossella Annunziata, Luz Amadei Martínez, Camilla Borgonuovo, Nadine Rijsdijk, Peter Chaerle, Koen Van den Berge, Sofie D’hondt, Daniele Iudicone, Marina Montresor, Maria Immacolata Ferrante, Klaas Vandepoele, Wim Vyverman
Publié dans: Nature Communications, Numéro 16, 2025, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-025-65296-9

Unveiling the link between phytoplankton molecular physiology and biogeochemical cycling via genome-scale modeling

Auteurs: Antoine Régimbeau, Olivier Aumont, Chris Bowler, Lionel Guidi, George A. Jackson, Eric Karsenti, Laurent Memery, Alessandro Tagliabue, Damien Eveillard
Publié dans: Science Advances, Numéro 11, 2025, ISSN 2375-2548
Éditeur: American Association for the Advancement of Science (AAAS)
DOI: 10.1126/sciadv.adq3593

Sea level rise: A plea for taking the viewpoint of the ocean

Auteurs: Roberto Casati, Augustin Portier, Clément Astruc Delor, Bernadette Baird-Zars, Christophe Cerino, Oscar Julian Esteban-Cantillo, Damien Eveillard, Stefano Malatesta, Marcella Schmidt di Friedberg
Publié dans: Marine Policy, Numéro 185, 2026, Page(s) 106972, ISSN 0308-597X
Éditeur: Pergamon Press Ltd.
DOI: 10.1016/j.marpol.2025.106972

Distinct habitat and biogeochemical properties of low‐oxygen‐adapted tropical oceanic phytoplankton

Auteurs: Isabelle Cox, Robert J. W. Brewin, Giorgio Dall'Olmo, Katy Sheen, Shubha Sathyendranath, Rafael Rasse, Osvaldo Ulloa
Publié dans: Limnology and Oceanography, Numéro 68, 2023, Page(s) 2022-2039, ISSN 0024-3590
Éditeur: American Society of Limnonogy and Oceanography
DOI: 10.1002/lno.12404

The land-sea breeze influences the oceanography of the southern Benguela upwelling system at multiple time-scales

Auteurs: Giles Fearon; Steven Herbette; Gildas Cambon; Jennifer Veitch; Jan-Olaf Meynecke; Marcello Vichi
Publié dans: Frontiers in Marine Science, 2023, ISSN 2296-7745
Éditeur: Frontiers Media S.A.
DOI: 10.3389/fmars.2023.1186069

Disentangling marine microbial networks across space

Auteurs: Ina M. Deutschmann; Josep M. Gasol; Josep M. Gasol; Damien Eveillard; Samuel Chaffron; Ramiro Logares; Erwan Delage; Caterina R. Giner; Marta Sebastián; Julie Poulain; Javier Arístegui; Carlos M. Duarte; Silvia G. Acinas; Ramon Massana
Publié dans: nature communications, 2024, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-023-44550-y

An Assessment of CO ₂ Storage and Sea‐Air Fluxes for the Atlantic Ocean and Mediterranean Sea Between 1985 and 2018

Auteurs: Fiz F. Pérez, M. Becker, N. Goris, M. Gehlen, M. López‐Mozos, J. Tjiputra, A. Olsen, J. D. Müller, I. E. Huertas, T. T. T. Chau, V. Cainzos, A. Velo, G. Benard, J. Hauck, N. Gruber, Rik Wanninkhof
Publié dans: Global Biogeochemical Cycles, Numéro 38, 2024, ISSN 0886-6236
Éditeur: American Geophysical Union
DOI: 10.1029/2023gb007862

Potential Predictability of the Spring Bloom in the Southern Ocean Sea Ice Zone

Auteurs: Benjamin Buchovecky, Graeme A. MacGilchrist, Mitchell Bushuk, F. Alexander Haumann, Thomas L. Frölicher, Natacha Le Grix, John Dunne
Publié dans: Geophysical Research letters, 2023, ISSN 0094-8276
Éditeur: American Geophysical Union
DOI: 10.1029/2023gl105139

The influence of the land–sea breeze on coastal upwelling systems: locally forced vs internal wave vertical mixing and implications for thermal fronts

Auteurs: Giles Fearon, Steven Herbette, Jennifer Veitch, Gildas Cambon, Marcello Vichi
Publié dans: Ocean Modelling, 2022, ISSN 1463-5003
Éditeur: Elsevier BV
DOI: 10.1016/j.ocemod.2022.102069

Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean

Auteurs: Marta Royo-Llonch; Lucie Zinger; Benjamin Churcheward; Tara Oceans Coordinators; Samuel Chaffron; Damien Eveillard; Eric Karsenti; Shinichi Sunagawa; Patrick Wincker; Lee Karp-Boss; Chris Bowler; Pablo G. Sanchez; Silvia G. Acinas; Clara Ruiz-González; Guillem Salazar; Carlos Pedrós-Alió; Marta Sebastián; Karine Labadie; Lucas Paoli; Federico M Ibarbalz; Federico M Ibarbalz
Publié dans: instname:Consejo Superior de Investigaciones Científicas (CSIC), Numéro 5, 2021, ISSN 2730-6151
Éditeur: Oxford University Press

A dynamical geography of observed trends in the global ocean

Auteurs: Bruno Buongiorno Nardelli, Daniele Iudicone
Publié dans: Science Advances, Numéro 11, 2025, ISSN 2375-2548
Éditeur: American Association for the Advancement of Science (AAAS)
DOI: 10.1126/sciadv.adq3532

Comparison of macrolitter and meso- and microplastic pollution on French riverbanks and coastal beaches using citizen science with schoolchildren

Auteurs: Léna Philip, Maëla Le Picard, Edouard Lavergne, Pascaline Bourgain, Brigitte Sabard, Romain Troublé, Anne-Leila Meistertzheim, Wolfgang Ludwig, Alexandra ter Halle, Camille Lacroix, Jean-François Ghiglione
Publié dans: Environmental Science and Pollution Research, Numéro 32, 2025, Page(s) 10066-10080, ISSN 1614-7499
Éditeur: Springer Science and Business Media LLC
DOI: 10.1007/s11356-024-35506-w

Ocean Lagrangian Trajectories (OLTraj): Lagrangian analysis for non-expert users

Auteurs: Giorgio Dall'Olmo; Francesco Nencioli; Thomas Jackson; Robert J. W. Brewin; John A. Gittings; Dionysios E. Raitsos
Publié dans: Open Research Europe, 2021, ISSN 2732-5121
Éditeur: F1000 Research Limited
DOI: 10.12688/openreseurope.14133.1

Machine learning in marine ecology: an overview of techniques and applications

Auteurs: Peter Rubbens, Stephanie Brodie, Tristan Cordier, Diogo Destro Barcellos, Paul Devos, Jose A Fernandes-Salvador, Jennifer I Fincham, Alessandra Gomes, Nils Olav Handegard, Kerry Howell, Cédric Jamet, Kyrre Heldal Kartveit, Hassan Moustahfid, Clea Parcerisas, Dimitris Politikos, Raphaëlle Sauzède, Maria Sokolova, Laura Uusitalo, Laure Van den Bulcke, Aloysius T M van Helmond, Jordan T Watson
Publié dans: ICES Journal of Marine Science, Numéro 80, 2024, Page(s) 1829-1853, ISSN 1054-3139
Éditeur: Oxford University Press
DOI: 10.1093/icesjms/fsad100

Deviation from neutral species abundance distributions unveils geographical differences in the structure of diatom communities

Auteurs: Emanuele Pigani, Bruno Hay Mele, Lucia Campese, Enrico Ser-Giacomi, Maurizio Ribera, Daniele Iudicone, Samir Suweis
Publié dans: Science Advances, Numéro 10, 2024, ISSN 2375-2548
Éditeur: American Association for the Advancement of Science (AAAS)
DOI: 10.1126/sciadv.adh0477

Ocean climate and hydrodynamics drive decadal shifts in Northeast Atlantic dinoflagellates

Auteurs: Loïck Kléparski, Grégory Beaugrand, Clare Ostle, Martin Edwards, Morten D. Skogen, Nicolas Djeghri, Hjálmar Hátún
Publié dans: Global Change Biology, Numéro 30, 2025, ISSN 1354-1013
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/gcb.17163

Insights into spatial synchrony enabled by long-term data

Auteurs: Daniel Reuman, Jonathan Walter, Lawrence Sheppard, Vadim Karatayev, Ethan Kadiyala, Amanda Lohmann, Thomas Anderson, Nat Coombs, Kyle Haynes, Lauren Hallett, Max Castorani
Publié dans: ESS OpenArchive, 2026, ISSN 0000-0000
Éditeur: NA
DOI: 10.22541/au.172064285.57840967/v1

A Pan-European study of the bacterial plastisphere diversity along river-to-sea continuums

Auteurs: Léna Philip, Leila Chapron, Valérie Barbe, Gaëtan Burgaud, Isabelle Calvès, Ika Paul-Pont, Odon Thiébeauld, Brice Sperandio, Lionel Navarro, Alexandra ter Halle, Boris Eyheraguibel, Wolfgang Ludwig, Maialen Palazot, Mikael Kedzierski, Anne-Leila Meistertzheim, Jean-François Ghiglione
Publié dans: Environmental Science and Pollution Research, Numéro 32, 2025, Page(s) 10164-10180, ISSN 1614-7499
Éditeur: Springer Science and Business Media LLC
DOI: 10.1007/s11356-024-35658-9

Efficient biological carbon export to the mesopelagic ocean induced by submesoscale fronts

Auteurs: Mingxian Guo, Xiaogang Xing, Peng Xiu, Giorgio Dall’Olmo, Weifang Chen & Fei Chai
Publié dans: nature communications, 2024, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-024-44846-7

The European Nucleotide Archive in 2023

Auteurs: David Yuan, Alisha Ahamed, Josephine Burgin, Carla Cummins, Rajkumar Devraj, Khadim Gueye, Dipayan Gupta, Vikas Gupta, Muhammad Haseeb, Maira Ihsan, Eugene Ivanov, Suran Jayathilaka, Vishnukumar Balavenkataraman Kadhirvelu, Manish Kumar, Ankur Lathi, Rasko Leinonen, Jasmine McKinnon, Lili Meszaros, Colman O’Cathail, Dennis Ouma, Joana Paupério, Stephane Pesant, Nadim Rahman, Gabriele Rinck, San
Publié dans: Nucleic Acids Research, Numéro 52, 2024, Page(s) D92-D97, ISSN 0305-1048
Éditeur: Oxford University Press
DOI: 10.1093/nar/gkad1067

Depth-dependent bacterial colonization on model chitin particles in the open ocean

Auteurs: Cordelia Roberts, Kimberley Bird, Nathan Chrismas, Susan Hartman, Michael Cunliffe
Publié dans: Letters in Applied Microbiology, Numéro 77, 2025, ISSN 1472-765X
Éditeur: Oxford University Press (OUP)
DOI: 10.1093/lambio/ovae107

The European Nucleotide Archive in 2021.

Auteurs: Carla Cummins; Alisha Ahamed; Raheela Aslam; Josephine Burgin; Rajkumar Devraj; Ossama Edbali; Dipayan Gupta; Peter W. Harrison; Muhammad Haseeb; Sam Holt; Talal Ibrahim; Eugene Ivanov; Suran Jayathilaka; Vishnukumar Balavenkataraman Kadhirvelu; Simon Kay; Manish Kumar; Ankur Lathi; Rasko Leinonen; Fábio Madeira; Nandana Madhusoodanan; Milena Mansurova; Colman O’Cathail; Matt Pearce; Stephane P
Publié dans: Nucleic Acids Research, 2022, ISSN 1362-4962
Éditeur: Oxford University press
DOI: 10.1093/nar/gkab1051

Trait–Based Adjustments: Key to Improving Model Representation of the Bloom Seasonal Cycle in the Subantarctic Zone

Auteurs: T. B. Mashifane, A. Tagliabue, S. J. Thomalla
Publié dans: Geophysical Research Letters, Numéro 52, 2026, ISSN 0094-8276
Éditeur: American Geophysical Union
DOI: 10.1029/2025gl118997

Major declines in NE Atlantic plankton contrast with more stable populations in the rapidly warming North Sea

Auteurs: Matthew M. Holland, Arnaud Louchart, Luis Felipe Artigas, Clare Ostle, Angus Atkinson, Isabelle Rombouts, Carolyn A. Graves, Michelle Devlin, Birgit Heyden, Margarita Machairopoulou, Eileen Bresnan, Jos Schilder, Hans H. Jakobsen, Hannah Lloyd-Hartley, Paul Tett, Mike Best, Eric Goberville, Abigail McQuatters-Gollop
Publié dans: Science of The Total Environment, Numéro 898, 2024, Page(s) 165505, ISSN 0048-9697
Éditeur: Elsevier BV
DOI: 10.1016/j.scitotenv.2023.165505

Disentangling temporal associations in marine microbial networks

Auteurs: Ina Maria Deutschmann, Anders K. Krabberød, Francisco Latorre, Erwan Delage, Cèlia Marrasé, Vanessa Balagué, Josep M. Gasol, Ramon Massana, Damien Eveillard, Samuel Chaffron, Ramiro Logares
Publié dans: Microbiome, Numéro 11, 2023, ISSN 2049-2618
Éditeur: Springer Science and Business Media LLC
DOI: 10.1186/s40168-023-01523-z

MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration

Auteurs: Mitja M Zdouc, Kai Blin, Nico L L Louwen, Jorge Navarro, Catarina Loureiro, Chantal D Bader, Constance B Bailey, Lena Barra, Thomas J Booth, Kenan A J Bozhüyük, José D D Cediel-Becerra, Zachary Charlop-Powers, Marc G Chevrette, Yit Heng Chooi, Paul M D’Agostino, Tristan de Rond, Elena Del Pup, Katherine R Duncan, Wenjia Gu, Novriyandi Hanif, Eric J N Helfrich, Matthew Jenner, Yoh
Publié dans: Nucleic Acids Research, Numéro 53, 2025, Page(s) D678-D690, ISSN 0305-1048
Éditeur: Oxford University Press
DOI: 10.1093/nar/gkae1115

Emergent Relationships Between the Functional Diversity of Marine Planktonic Copepods and Ecosystem Functioning in the Global Ocean

Auteurs: Fabio Benedetti, Jonas Wydler, Corentin Clerc, Nielja Knecht, Meike Vogt
Publié dans: Global Change Biology, Numéro 31, 2025, ISSN 1354-1013
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/gcb.70094

Interannual Variability of Subpolar Mode Water in the Subpolar North Atlantic

Auteurs: I. Stendardo, B. Buongiorno Nardelli, S. Durante, D. Iudicone, D. Kieke
Publié dans: Journal of Geophysical Research: Oceans, Numéro 129, 2024, ISSN 2169-9275
Éditeur: American Geophysical Union (AGU)
DOI: 10.1029/2023jc019937

Genome-scale community modelling reveals conserved metabolic cross-feedings in epipelagic bacterioplankton communities

Auteurs: Nils Giordano, Marinna Gaudin, Camille Trottier, Erwan Delage, Charlotte Nef, Chris Bowler, Samuel Chaffron
Publié dans: Nature Communications, Numéro 15, 2024, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-024-46374-w

Emergent patterns of patchiness differ between physical and planktonic properties in the ocean

Auteurs: Patrick Clifton Gray, Emmanuel Boss, Guillaume Bourdin, null null, A. Bourdais, C. Bowler, C. Moulin, C. de Vargas, D. Iudicone, D. Couet, E. Catafort, E. Boss, E. Petit, E. Mayeux, F. Lombard, J. Schramm, L. Guidi, M. Moll, P. Wincker, R. Laxenaire, R. Troublé, S. Sanchez, S. Pesant, T. Linkowski, null null, S. Planes, D. Allemand, N. Djerbi, B. C. C. Hume, T. Röthig, M. Ziegler, L. Paoli, J. M
Publié dans: Nature Communications, Numéro 16, 2026, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-025-56794-x

Ultra-Oligotrophic Waters Expansion in the North Atlantic Subtropical Gyre Revealed by 21Â Years of Satellite Observations

Auteurs: Leonelli, F. E.;Bellacicco, M.;Pitarch, J.;Organelli, E.;Nardelli B, Buongiorno;de Toma, V.;Cammarota, C.;Marullo S;null;Santoleri, R.
Publié dans: Geophysical research letters, 2022, ISSN 0094-8276
Éditeur: American Geophysical Union

Historical and future maximum sea surface temperatures

Auteurs: B. B. CAEL, FRIEDRICH A. BURGER, STEPHANIE A. HENSON, GREGORY L. BRITTEN, AND THOMAS L. FRÖLICHER
Publié dans: Science Advances, 2024, ISSN 2375-2548
Éditeur: American Association for the Advancement of science
DOI: 10.1126/sciadv.adj5569

PHYTOBASE: A global synthesis of open ocean phytoplankton occurrences

Auteurs: Damiano Righetti, Meike Vogt, Niklaus E. Zimmermann, Nicolas Gruber
Publié dans: Biogeosciences, 2025, ISSN 1726-4189
Éditeur: Copernicus
DOI: 10.5194/essd-2019-159

Including filter-feeding gelatinous macrozooplankton in a global marine biogeochemical model: model-data comparison and impact on the ocean carbon cycle

Auteurs: Corentin Clerc, Laurent Bopp, Fabio Benedetti, Meike Vogt, Olivier Aumont
Publié dans: Limnology and Oceanography Bulletin, 2026, ISSN 1539-6088
Éditeur: Wiley-Blackwell
DOI: 10.1002/essoar.10511748.1

Leveraging marine biotechnology for an All-Atlantic sustainable blue economy

Auteurs: Cristiane Thompson, Alice C. Ortmann, Thulani Makhalanyane, Fabiano Thompson
Publié dans: Trends in Biotechnology, Numéro 42, 2024, Page(s) 939-941, ISSN 0167-7799
Éditeur: Elsevier BV
DOI: 10.1016/j.tibtech.2023.12.011

Leveraging marine biotechnology for an All-Atlantic sustainable blue economy

Auteurs: Cristiane Thompson;Alice C. Ortmann;Thulani Makhalanyane;Fabiano Thompson
Publié dans: Ecological Indicators, 2024, ISSN 1470-160X
Éditeur: Elsevier BV

Large protistan mixotrophs in the North Atlantic Continuous Plankton Recorder time series: associated environmental conditions and trends

Auteurs: Karen Stamieszkin, Nicole C. Millette, Jessica Y. Luo, Elizabeth Follett, Nicholas R. Record, David G. Johns
Publié dans: Frontiers in Marine Science, Numéro 11, 2024, ISSN 2296-7745
Éditeur: Frontiers Media SA
DOI: 10.3389/fmars.2024.1320046

Ecology of Endozoicomonadaceae in three coral genera across the Pacific Ocean

Auteurs: Corentin Hochart; Lucas Paoli; Hans-Joachim Ruscheweyh; Guillem Salazar; Emilie Boissin; Sarah Romac; Julie Poulain; Guillaume Bourdin; Guillaume Iwankow; Clémentine Moulin; Maren Ziegler; Barbara Porro; Eric J. Armstrong; Benjamin C. C. Hume; Jean-Marc Aury; Claudia Pogoreutz; David A. Paz-García; Maggy M. Nugues; Sylvain Agostini; Bernard Banaigs; Emmanuel Boss; Chris Bowler; Colomban de Varga
Publié dans: Nature Communications, 2023, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-023-38502-9

Exploration of marine phytoplankton: from their historical appreciation to the omics era

Auteurs: Juan Jose Pierella Karlusich, Federico M Ibarbalz, Chris Bowler
Publié dans: Journal of Plankton Research, 2020, ISSN 0142-7873
Éditeur: Oxford University Press
DOI: 10.1093/plankt/fbaa049

Contribution of physical processes to variability of dissolved silicate in the Labrador Sea between 1980 and 2015

Auteurs: Alizée Dale, Marion Gehlen, Douglas W. R. Wallace, Germain Bénard, Christian Éthé, Elena Alekseenko
Publié dans: Biogeosciences, 2024, ISSN 1726-4189
Éditeur: Copernicus
DOI: 10.5194/egusphere-2023-2538

Including filter-feeding gelatinous macrozooplankton in a global marine biogeochemical model: model–data comparison and impact on the ocean carbon cycle

Auteurs: Clerc, C., Bopp, L., Benedetti, F., Vogt, M., and Aumont, O
Publié dans: Biogeosciences, 2023, ISSN 1726-4189
Éditeur: Copernicus
DOI: 10.5194/bg-20-869-2023

A lab-on-a-chip system integrating DNA purification and loop-mediated isothermal amplification for the quantification of the toxic diatom <i>Pseudo-nitzschia multistriata</i>

Auteurs: Ahmed I. Alrefaey, Jonathan S. McQuillan, Allison Schaap, Fabrizio Siracusa, Christopher L. Cardwell, John Walk, Daniel Rogers, Reuben Forrester, Matthew C. Mowlem, Julie C. Robidart
Publié dans: Sensors &amp; Diagnostics, Numéro 5, 2026, Page(s) 63-75, ISSN 2635-0998
Éditeur: Royal Society of Chemistry (RSC)
DOI: 10.1039/d5sd00135h

Compound high-temperature and low-chlorophyll extremes in the ocean over the satellite period

Auteurs: Le Grix, Natacha; Zscheischler, Jakob; Laufkötter, Charlotte; Rousseaux, Cecile S.; Frölicher, Thomas L.
Publié dans: Biogeosciences, 2021, ISSN 1726-4189
Éditeur: Copernicus
DOI: 10.5194/bg-18-2119-2021

Drivers of Surface Ocean Acidity Extremes in an Earth System Model

Auteurs: Friedrich A. Burger, Thomas L. Frölicher
Publié dans: Global Biogeochemical Cycles, 2023, ISSN 0886-6236
Éditeur: American Geophysical Union
DOI: 10.1029/2023gb007785

Analysis of a coastal-trapped wave generated by the 2016 extra-tropical cyclonic system in the Southern Brazilian continental shelf with COAWST modeling system

Auteurs: Luis Felipe Ferreira de Mendonça, Antônio Fernando Harter Fetter-Filho, Mauro Michelena Andrade, Fabricio Sanguinetti Cruz de Oliveira, Douglas da Silva Lindemann, Rose Ane Pereira de Freitas, Rafael Afonso do Nascimento Reis, Carlos Alessandre Domingos Lentini, Claudia Klose Parise, Daniel Caetano Santos
Publié dans: Journal of South American Earth Sciences, 2023, ISSN 0895-9811
Éditeur: Earth Sciences and Resources Institute
DOI: 10.1016/j.jsames.2023.104522

Process controlling iron–manganese regulation of the Southern Ocean biological carbon pump

Auteurs: Prima Anugerahanti; Alessandro Tagliabue
Publié dans: Philosophical transactions. Series A, Mathematical, physical, and engineering sciences, 2023, ISSN 1364-503X
Éditeur: Royal Society of London
DOI: 10.1098/rsta.2022.0065

Environmental vulnerability of the global ocean epipelagic plankton community interactome

Auteurs: Chaffron, Samuel;Delage, Erwan;Budinich, Marko;Vintache, Damien;Henry, Nicolas;Nef, Charlotte;Ardyna, Mathieu;Zayed, Ahmed A.;Junger, Pedro C.;Galand, Pierre E.;Lovejoy, Connie;Murray, Alison;Sarmento, Hugo;Tara Oceans Coordinators;Acinas, Silvia G.;Babin, Marcel;Iudicone, Daniele;Jaillon, Olivier;Karsenti, Eric;Wincker, Patrick;Karp-Boss, Lee;Sullivan, Matthew B.;Bowler, Chris;Vargas, Colomban de
Publié dans: Science Advances, 2021, ISSN 2375-2548
Éditeur: American Association for the Advancement of science

The NEREA Augmented Observatory: an integrative approach to marine coastal ecology

Auteurs: Lucia Campese, Luca Russo, Maria Abagnale, Adriana Alberti, Giancarlo Bachi, Cecilia Balestra, Daniele Bellardini, Angela Buondonno, Ulisse Cardini, Ylenia Carotenuto, Giovanni Checcucci, Maria Luisa Chiusano, Isabella D’Ambra, Giuliana d’Ippolito, Iole Di Capua, Vincenzo Donnarumma, Angelo Fontana, Marta Furia, Denisse Galarza-Verkovitch, Roberto Gallia, Karine Labadie, Serena Leone, Priscill
Publié dans: Scientific Data, Numéro 11, 2024, ISSN 2052-4463
Éditeur: Springer Science and Business Media LLC
DOI: 10.1038/s41597-024-03787-y

The European Nucleotide Archive in 2022

Auteurs: Josephine Burgin, Alisha Ahamed, Carla Cummins, Rajkumar Devraj, Khadim Gueye, Dipayan Gupta, Vikas Gupta, Muhammad Haseeb, Maira Ihsan, Eugene Ivanov, Suran Jayathilaka, Vishnukumar Balavenkataraman Kadhirvelu, Manish Kumar, Ankur Lathi, Rasko Leinonen, Milena Mansurova, Jasmine McKinnon, Colman O’Cathail, Joana Paupério, Stéphane Pesant, Nadim Rahman, Gabriele Rinck, Sandeep Selvakumar, Swa
Publié dans: Nucleic Acids Research, Numéro 51, 2023, Page(s) D121-D125, ISSN 0305-1048
Éditeur: Oxford University Press
DOI: 10.1093/nar/gkac1051

The oceanic physical injection pump of organic carbon

Auteurs: Marco Bellacicco, Salvatore Marullo, Giorgio Dall’Olmo, Daniele Iudicone, Bruno Buongiorno Nardelli
Publié dans: Nature Communications, Numéro 16, 2025, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-025-62363-z

Ocean-wide comparisons of mesopelagic planktonic community structures

Auteurs: Rigonato, Janaina; Budinich, Marko; Murillo, Alejandro A.; Brandão, Manoela C.; Pierella Karlusich, Juan J.; Soviadan, Yawouvi Dodji; Gregory, Ann C.; Endo, Hisashi; Kokoszka, Florian; Vik, Dean; Henry, Nicolas; Frémont, Paul; Labadie, Karine; Zayed, Ahmed A.; Dimier, Céline; Picheral, Marc; Searson, Sarah; Poulain, Julie; Kandels, Stefanie; Pesant, Stéphane; Sunagawa, Shinichi; et al.
Publié dans: ISME Communications, 2023, ISSN 2730-6151
Éditeur: Springer Nature
DOI: 10.1038/s43705-023-00279-9

Century-scale carbon sequestration flux throughout the ocean by the biological pump

Auteurs: Florian Ricour, Lionel Guidi, Marion Gehlen, Timothy DeVries, Louis Legendre
Publié dans: nature geoscience, 2023, ISSN 1752-0894
Éditeur: Nature Publishing Group
DOI: 10.1038/s41561-023-01318-9

MGnify Genomes: A Resource for Biome-specific Microbial Genome Catalogues

Auteurs: Tatiana A. Gurbich, Alexandre Almeida, Martin Beracochea, Tony Burdett, Josephine Burgin, Guy Cochrane, Shriya Raj, Lorna Richardson, Alexander B. Rogers, Ekaterina Sakharova, Gustavo A. Salazar, Robert D. Finn
Publié dans: Journal of Molecular Biology, Numéro 435, 2025, Page(s) 168016, ISSN 0022-2836
Éditeur: Academic Press
DOI: 10.1016/j.jmb.2023.168016

BIOMARCADORES ORGÂNICOS E INORGÂNICOS DE AEROSSÓIS ATMOSFÉRICOS DE REGIÕES MARINHAS

Auteurs: Sabrina Martinez, Jeancarlo dos Anjos, Pedro Pereira, Lilian Guarieiro, Gisele da Rocha
Publié dans: Química Nova, 2023, ISSN 0100-4042
Éditeur: Sociedade Brasileira de Quimica
DOI: 10.21577/0100-4042.20230063

Four <i>Lentisphaerae</i> Family Metagenome-Assembled Genomes from the South Atlantic Ocean

Auteurs: Oluwatayo A. Makinde, Percy Mutseka Lunga, Oliver K. I. Bezuidt, Thulani P. Makhalanyane
Publié dans: Microbiology Resource Announcements, Numéro 11, 2022, ISSN 2576-098X
Éditeur: American Society for Microbiology
DOI: 10.1128/mra.00496-22

Priorities for ocean microbiome research

Auteurs: Tara Ocean Foundation; Tara Oceans Consortium; European Molecular Biology Laboratory (EMBL); European Marine Biological Resource Centre - European Research Infrastructure Consortium (EMBRC-ERIC); Acinas, Silvia G.
Publié dans: nature microbiology, 2022, ISSN 2058-5276
Éditeur: Nature portfolio
DOI: 10.1038/s41564-022-01145-5

Plastic debris exposure and effects in rivers: Boundaries for efficient ecological risk assessment

Auteurs: Jean François Ghiglione, Alexandra ter Halle
Publié dans: Environmental Science and Pollution Research, Numéro 32, 2025, Page(s) 10023-10031, ISSN 1614-7499
Éditeur: Springer Science and Business Media LLC
DOI: 10.1007/s11356-024-35201-w

A causality-based method for multi-model comparison: Application to relationships between atmospheric and marine biogeochemical variables

Auteurs: Germain Bénard, Marion Gehlen, Mathieu Vrac
Publié dans: Biogeosciences, 2025, ISSN 1726-4189
Éditeur: Copernicus
DOI: 10.5194/esd-2024-31

Novel Insights into Ocean Trace Element Cycling from Biogeochemical Models

Auteurs: null null, Alessandro Tagliabue, Thomas Weber
Publié dans: Oceanography, Numéro 37, 2024, Page(s) 131-141, ISSN 1042-8275
Éditeur: Oceanography Society
DOI: 10.5670/oceanog.2024.418

Basin-Scale Underway Quantitative Survey of Surface Microplankton Using Affordable Collection and Imaging Tools Deployed From Tara

Auteurs: Zoé Mériguet; Anna Oddone; David Le Guen; Thibaut Pollina; Romain Bazile; Clémentine Moulin; Romain Troublé; Manu Prakash; Colomban de Vargas; Fabien Lombard
Publié dans: Frontiers in Marine Science, 2022, ISSN 2296-7745
Éditeur: Frontiers Media S.A.
DOI: 10.3389/fmars.2022.916025

Major restructuring of marine plankton assemblages under global warming

Auteurs: Fabio Benedetti, Meike Vogt, Urs Hofmann Elizondo, Damiano Righetti, Niklaus E. Zimmermann & Nicolas Gruber
Publié dans: nature communications, 2021, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-021-25385-x

Microbiomes for a stable planet: Embedding microbial processes in global climate action

Auteurs: Emma Rocke, Rob Knight, Guilia Ghisleni, Tim McAllister, Alice Ortmann, Antonia Bruno, Diego J. Jimenez, Jian Xu
Publié dans: Green Carbon, 2026, ISSN 2950-1555
Éditeur: Elsevier BV
DOI: 10.1016/j.greenca.2026.01.001

A coupled physical-biogeochemical modeling approach to investigate the dynamics of the Benguela Upwelling System

Auteurs: Amr Talaat Salama, Tomas Lovato, Momme Butenschön, Marco Zavatarelli
Publié dans: Frontiers in Marine Science, Numéro 12, 2025, ISSN 2296-7745
Éditeur: Frontiers Media SA
DOI: 10.3389/fmars.2025.1601284

The European Nucleotide Archive in 2020

Auteurs: Peter W. Harrison;Alisha Ahamed;Raheela Aslam;Blaise T. F. Alako;Josephine Burgin;Nicola Buso;Melanie Courtot;Jun Fan;Dipayan Gupta;Muhammad Haseeb;Sam Holt;Talal Ibrahim;Eugene Ivanov;Suran Jayathilaka;Vishnukumar Balavenkataraman Kadhirvelu;Manish Kumar;Rodrigo Lopez;Simon Kay;Rasko Leinonen;Xin Liu 0006;Colman O'Cathail;Amir Pakseresht;Young Mi Park;Stephane Pesant;Nadim Rahman;Jeena Rajan;Alex
Publié dans: FEMS Microbiology Ecology, 2020, ISSN 1574-6941
Éditeur: Oxford University Press

Who Is Where in Marine Food Webs? A Trait-Based Analysis of Network Positions

Auteurs: Anett Endrédi; Anett Endrédi; Katalin Patonai; Katalin Patonai; János Podani; Simone Libralato; Ferenc Jordán; Ferenc Jordán
Publié dans: Frontiers in Marine Science, 2021, ISSN 2296-7745
Éditeur: Frontiers Media S.A.
DOI: 10.3389/fmars.2021.636042

A novel multispecies approach for the detection of regime shifts in a plankton community – a case study in the North Sea

Auteurs: Paul Dees, Friederike Fröb, Beatriz Arellano-Nava, David G. Johns, Christoph Heinze
Publié dans: Ocean Science, Numéro 21, 2025, Page(s) 2397-2417, ISSN 1812-0792
Éditeur: Copernicus GmbH
DOI: 10.5194/os-21-2397-2025

Hotspots and drivers of compound marine heatwaves and low net primary production extremes

Auteurs: Natacha Le Grix, Jakob Zscheischler, Keith B. Rodgers, Ryohei Yamaguchi, Thomas L. Frölicher
Publié dans: Biogeosciences, Numéro 19, 2023, Page(s) 5807-5835, ISSN 1726-4189
Éditeur: Copernicus GmbH
DOI: 10.5194/bg-19-5807-2022

From nets to networks: tools for deciphering phytoplankton metabolic interactions within communities and their global significance

Auteurs: Charlotte Nef, Juan José Pierella Karlusich, Chris Bowler
Publié dans: Philosophical Transactions of the Royal Society B: Biological Sciences, Numéro 379, 2024, ISSN 0962-8436
Éditeur: Royal Society of London
DOI: 10.1098/rstb.2023.0172

Surface and Subsurface Compound Marine Heatwave and Biogeochemical Extremes Under Climate Change

Auteurs: Natacha Le Grix, Friedrich A. Burger, Thomas L. Frölicher
Publié dans: Global Biogeochemical Cycles, Numéro 39, 2025, ISSN 0886-6236
Éditeur: American Geophysical Union
DOI: 10.1029/2025gb008514

Integrating environmental variability to broaden the research on coral responses to future ocean conditions

Auteurs: Maren Ziegler; Maren Ziegler; Andrea Anton; Andrea Anton; Shannon G. Klein; Nils Rädecker; Nils Rädecker; Nils Rädecker; Nathan R. Geraldi; Sebastian Schmidt-Roach; Vincent Saderne; Peter J. Mumby; Maha J. Cziesielski; Cecilia Martin; Thomas L. Frölicher; Thomas L. Frölicher; John M. Pandolfi; David J. Suggett; Manuel Aranda; Carlos M. Duarte; Christian R. Voolstra; Christian R. Voolstra
Publié dans: Global Change Biology, 2021, ISSN 1365-2486
Éditeur: Wiley-Blackwell
DOI: 10.1111/gcb.15840

Computing marine plankton connectivity under thermal constraints

Auteurs: Manral, Darshika; Iovino, Doroteaciro; Jaillon, Olivier; Masina, Simona; Sarmento, Hugo; Iudicone, Daniele; Amaral-Zettler, Linda; van Sebille, Erik; Sub Physical Oceanography; Marine and Atmospheric Research
Publié dans: Frontiers in Marine Science, 2023, ISSN 2296-7745
Éditeur: Frontiers Media Ltd
DOI: 10.3389/fmars.2023.1066050

Disentangling microbial networks across pelagic zones in the tropical and subtropical global ocean

Auteurs: Deutschmann, Ina;Delage, Erwan;Giner, Caterina;Sebastian, Marta;Poulain, Julie;ArÃ-stegui, Javier;Duarte, Carlos;Acinas, Silvia;Massana, Ramon;Gasol, Josep;Eveillard, Damien;Chaffron, Samuel;Logares, Ramiro
Publié dans: ISME Communications, 2024, ISSN 2730-6151
Éditeur: Oxford University Press

Late summer northwestward Amazon plume pathway under the action of the North Brazil Current rings

Auteurs: L. Olivier, G. Reverdin, J. Boutin, R. Laxenaire, D. Iudicone, S. Pesant, Paulo H.R. Calil, J. Horstmann, D. Couet, J.M. Erta, P. Huber, H. Sarmento, A. Freire, A. Koch-Larrouy, J.-L. Vergely, P. Rousselot, S. Speich
Publié dans: Remote Sensing of Environment, Numéro 307, 2024, Page(s) 114165, ISSN 0034-4257
Éditeur: Elsevier BV
DOI: 10.1016/j.rse.2024.114165

Oceanographic features boost latitudinal patterns in copepod body size distribution in the South Atlantic

Auteurs: Érica C. Becker, Luis C. P. Macedo‐Soares, Catarina R. Marcolin, Manoela C. Brandão, Lars Stemmann, Maria G. Mazzocchi, Andrea S. Freire
Publié dans: Limnology and Oceanography, Numéro 69, 2024, Page(s) 2668-2679, ISSN 0024-3590
Éditeur: American Society of Limnonogy and Oceanography
DOI: 10.1002/lno.12694

Reinterpreting two regime shifts in North Sea plankton communities through the lens of functional traits

Auteurs: Nicolas Djeghri, Aurélien Boyé, Clare Ostle, Pierre Hélaouët
Publié dans: Global Ecology and Biogeography, 2023, ISSN 1466-822X
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/geb.13659

Trends in Oil Spill Modeling: A Review of the Literature

Auteurs: Rodrigo N. Vasconcelos, André T. Cunha Lima, Carlos A. D. Lentini, José Garcia V. Miranda, Luís F. F. de Mendonça, Diego P. Costa, Soltan G. Duverger, Elaine C. B. Cambui
Publié dans: Water, Numéro 17, 2025, Page(s) 2300, ISSN 2073-4441
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/w17152300

Marine biodegradation of tailor-made polyhydroxyalkanoates (PHA) influenced by the chemical structure and associated bacterial communities

Auteurs: Gabrielle Derippe, Léna Philip, Pierre Lemechko, Boris Eyheraguibel, Anne-Leïla Meistertzheim, Mireille Pujo-Pay, Pascal Conan, Valérie Barbe, Stéphane Bruzaud, Jean-François Ghiglione
Publié dans: Journal of Hazardous Materials, Numéro 462, 2026, Page(s) 132782, ISSN 0304-3894
Éditeur: Elsevier BV
DOI: 10.1016/j.jhazmat.2023.132782

Co-occurrence is associated with horizontal gene transfer across marine bacteria independent of phylogeny

Auteurs: Gavin M Douglas, Nicolas Tromas, Marinna Gaudin, Patrick Lypaczewski, Louis-Marie Bobay, B Jesse Shapiro, Samuel Chaffron
Publié dans: The ISME Journal, Numéro 20, 2026, ISSN 1751-7362
Éditeur: Nature Publishing Group
DOI: 10.1093/ismejo/wraf275

Global gradients in species richness of marine plankton functional groups

Auteurs: Fabio Benedetti, Nicolas Gruber, Meike Vogt
Publié dans: Journal of Plankton Research, 2023, ISSN 0142-7873
Éditeur: Oxford University Press
DOI: 10.1093/plankt/fbad044

Copepod functional traits and groups show divergent biogeographies in the global ocean

Auteurs: Fabio Benedetti; Jonas Wydler; Meike Vogt
Publié dans: Journal of Biogeography, 2022, ISSN 0305-0270
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/jbi.14512

Toward a Global Public Repository of Community Protocols to Encourage Best Practices in Biomolecular Ocean Observing and Research

Auteurs: Robyn M. Samuel, Raissa Meyer, Pier Luigi Buttigieg, Neil Davies, Nicholas W. Jeffery, Christopher Meyer, Christina Pavloudi, Kathleen Johnson Pitz, Maxime Sweetlove, Susanna Theroux, Jodie van de Kamp and Alison Watts
Publié dans: Frontiers in Marine Science, 2021, ISSN 2296-7745
Éditeur: Frontiers Media S.A.
DOI: 10.3389/fmars.2021.758694

Independent transitions to fully planktonic life cycles shaped the global distribution of medusozoans in the epipelagic zone

Auteurs: Manon Boosten, Camille Sant, Ophélie Da Silva, Samuel Chaffron, Lionel Guidi, Lucas Leclère
Publié dans: Proceedings of the National Academy of Sciences, Numéro 122, 2025, ISSN 0027-8424
Éditeur: National Academy of Sciences
DOI: 10.1073/pnas.2415979122

Response of Southern Ocean Resource Stress in a Changing Climate

Auteurs: Prima Anugerahanti, Alessandro Tagliabue
Publié dans: Geophysical Research Letters, Numéro 51, 2024, ISSN 0094-8276
Éditeur: American Geophysical Union
DOI: 10.1029/2023gl107870

Metocean Modulators of the First Recorded South Atlantic Hurricane: Catarina

Auteurs: Gustavo Lauton, Martinho Marta-Almeida, Geoff S. Dorfschäfer, Carlos A. D. Lentini
Publié dans: Geophysical Research Letters, 2021, ISSN 1944-8007
Éditeur: Wiley-Blackwell
DOI: 10.1029/2020gl091416

Environmental vulnerability of the global ocean plankton community interactome

Auteurs: Samuel Chaffron; Erwan Delage; Marko Budinich; Damien Vintache; Nelly Henry; Charlotte Nef; Mathieu Ardyna; Mathieu Ardyna; Ahmed A. Zayed; Pedro C. Junger; Pierre E. Galand; Connie Lovejoy; Alison E. Murray; Hugo Sarmento; Silvia G. Acinas; Marcel Babin; Marcel Babin; Daniele Iudicone; Olivier Jaillon; Eric Karsenti; Patrick Wincker; Lee Karp-Boss; Matthew B. Sullivan; Chris Bowler; C. de Vargas;
Publié dans: Science Advances, 2021, ISSN 2375-2548
Éditeur: American Association for the Advancement of science
DOI: 10.1126/sciadv.abg1921

Quantitative imaging datasets of surface micro- to mesoplankton communities and microplastic across the Pacific and North Atlantic oceans from the Tara Pacific expedition

Auteurs: Zoé Mériguet, Guillaume Bourdin, Nathaniel Kristan, Laetitia Jalabert, Olivier Bun, Marc Picheral, Louis Caray-Counil, Juliette Maury, Maria-Luiza Pedrotti, Amanda Elineau, David A. Paz-Garcia, Lee Karp-Boss, Gaby Gorsky, Fabien Lombard, null null
Publié dans: Earth System Science Data, Numéro 17, 2025, Page(s) 2761-2792, ISSN 1866-3516
Éditeur: Copernicus GmbH
DOI: 10.5194/essd-17-2761-2025

MGnify: the microbiome sequence data analysis resource in 2023

Auteurs: Lorna Richardson, Ben Allen, Germana Baldi, Martin Beracochea, Maxwell L Bileschi, Tony Burdett, Josephine Burgin, Juan Caballero-Pérez, Guy Cochrane, Lucy J Colwell, Tom Curtis, Alejandra Escobar-Zepeda, Tatiana A Gurbich, Varsha Kale, Anton Korobeynikov, Shriya Raj, Alexander B Rogers, Ekaterina Sakharova, Santiago Sanchez, Darren J Wilkinson, Robert D Finn
Publié dans: Nucleic Acids Research, Numéro 51, 2023, Page(s) D753-D759, ISSN 0305-1048
Éditeur: Oxford University Press
DOI: 10.1093/nar/gkac1080

Compound high temperature and low chlorophyll extremes in theocean over the satellite period

Auteurs: Natacha Le Grix, Jakob Zscheischler, Charlotte Laufkötter, Cécile S. Rousseaux, Thomas L. Frölicher
Publié dans: Biogeosciences, 2025, ISSN 1726-4189
Éditeur: Copernicus
DOI: 10.5194/bg-2020-412

Evaluation of the CMCC global eddying ocean model for the Ocean Model Intercomparison Project (OMIP2)

Auteurs: Doroteaciro Iovino; Pier Giuseppe Fogli; Simona Masina
Publié dans: Geoscientific Model Development, 2023, ISSN 1991-959X
Éditeur: Copernicus Gesellschaft mbH
DOI: 10.5194/gmd-16-6127-2023

Macroscale patterns of oceanic zooplankton composition and size structure

Auteurs: Manoela C. Brandão, Fabio Benedetti, Séverine Martini, Yawouvi Dodji Soviadan, Jean-Olivier Irisson, Jean-Baptiste Romagnan, Amanda Elineau, Corinne Desnos, Laëtitia Jalabert, Andrea S. Freire, Marc Picheral, Lionel Guidi, Gabriel Gorsky, Chris Bowler, Lee Karp-Boss, Nicolas Henry, Colomban de Vargas, Matthew B. Sullivan, Tara Oceans Consortium Coordinators, Lars Stemmann & Fabien Lombard
Publié dans: Scientific Reports, 2021, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-021-94615-5

Restructuring of plankton genomic biogeography in the surface ocean under climate change

Auteurs: Frémont, P., Gehlen, M., Vrac, M., Leconte, J., Delmont, T. O., Wincker, P., Iudicone, D.and Jaillon, O.
Publié dans: Nature Climate Change, 2022, ISSN 1758-6798
Éditeur: Nature Publishing Group
DOI: 10.1038/s41558-022-01314-8

Exploring the CO ₂ fugacity along the east coast of South America aboard the schooner Tara

Auteurs: Léa Olivier, Jacqueline Boutin, Gilles Reverdin, Christopher Hunt, Thomas Linkowski, Alison Chase, Nils Haentjens, Pedro C. Junger, Stephane Pesant, Douglas Vandemark
Publié dans: Biogeosciences, 2025, ISSN 1726-4189
Éditeur: Copernicus
DOI: 10.5194/essd-2024-452

A dataset of Oceanographic and biogeochemical anomalies in the Caribbean Sea.

Auteurs: Casals, Reinaldo;Varona, Humberto L.;Calzada, Amilcar E.;Lentini, Carlos A. D.;Noriega, Carlos;Borges, Dayanis M.;Lira, Simone M. A.;Santana, Claudeilton S. de;Araujo, Moacyr;Schwamborn, Ralf;Rodriguez, Alejandro
Publié dans: Latin American Data in Science, 2022, ISSN 0000-0000
Éditeur: NA

Spatial and temporal variability of mode-1 and mode-2 internal solitary waves from MODIS/TERRA sunglint off the Amazon shelf

Auteurs: Carina Regina de Macedo; Ariane Koch-Larrouy; José Carlos Bastos da Silva; Jorge Manuel Magalhães; Carlos Alessandre Domingos Lentini; Trung Kien Tran; Marcelo Caetano Barreto Rosa; Vincent Vantrepotte
Publié dans: Ocean Science, 2023, ISSN 1812-0784
Éditeur: Copernicus Gesellschaften
DOI: 10.5194/os-19-1357-2023

Phylogenomic analysis expands the known repertoire of single-stranded DNA viruses in benthic zones of the South Indian Ocean

Auteurs: Oliver K I Bezuidt, Thulani P Makhalanyane
Publié dans: ISME Communications, Numéro 4, 2024, ISSN 2730-6151
Éditeur: Oxford University Press (OUP)
DOI: 10.1093/ismeco/ycae065

The Marine Biodiversity Observation Network Plankton Workshops: Plankton Ecosystem Function, Biodiversity, and Forecasting - Research Requirements and Applications

Auteurs: Grigoratou, Maria;Montes, Enrique;Richardson, Anthony J.;Everett, Jason D.;Acevedo-Trejos, Esteban;Anderson, Clarissa;Chen, Bingzhang;Guy-Haim, Tamar;Hinners, Jana;Lindemann, Christian;Garcia, Tatiane Martins;Moeller, Klas O.;Monteiro, Fanny M.;Neeley, Aimee R.;O'Brien, Todd D.;Palacz, Artur P.;Poulton, Alex J.;Prowe, A. E. Friederike;RodrÃ-guez-Santiago, Áurea E.;Rousseaux, Cecile S.;Runge, J
Publié dans: Limnology and Oceanography Bulletin, 2022, ISSN 1539-6088
Éditeur: Wiley-Blackwell

The influence of the land-sea breeze on coastal upwelling systems: locally forced vs internal wave vertical mixing and implications for thermal fronts

Auteurs: Fearon, Giles;Herbette, Steven;Veitch, Jennifer;Cambon, Gildas;Vichi, Marcello
Publié dans: Ecological Indicators, 2022, ISSN 1470-160X
Éditeur: Elsevier BV

Contribution of genome scale metabolic modeling to niche theory

Auteurs: Regimbeau, Antoine;Budinich, Marko;Larhlimi, Abdelhalim;Pierella Karlusich, Juan Jose;Aumont, Olivier;Memery, Laurent;Bowler, Chris;Eveillard, Damien;Jordan, Ferenc
Publié dans: Ecology letters, 2021, ISSN 1461-0248
Éditeur: Wiley-Blackwell

Aligning Standards Communities for Omics Biodiversity Data: Sustainable Darwin Core-MIxS Interoperability

Auteurs: Raïssa Meyer, Ward Appeltans, William Duncan, Mariya Dimitrova, Yi-Ming Gan, Thomas Stjernegaard Jeppesen, Christopher Mungall, Deborah Paul, Pieter Provoost, Tim Robertson, Lynn Schriml, Saara Suominen, Ramona Walls, Maxime Sweetlove, Visotheary Ung, Anton Van de Putte, Elycia Wallis, John Wieczorek, Pier Buttigieg
Publié dans: Biodiversity Data Journal, Numéro 11, 2023, ISSN 1314-2828
Éditeur: Pensoft Publishers
DOI: 10.3897/bdj.11.e112420

Planktonic ecological networks support quantification of changes in ecosystem health and functioning

Auteurs: Matteo Loschi; Domenico D’Alelio; Elisa Camatti; Fabrizio Bernardi Aubry; Alfred Beran; Simone Libralato
Publié dans: Scientific reports, 2023, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-023-43738-y

The southern gap in ocean microbiome science

Auteurs: Hugo Sarmento, Paula Huber, Célio Dias Santos-Júnior, André Abreu, Thulani P. Makhalanyane, Natasha Karenyi, Emma Rocke, null null, Silvia G. Acinas, Linda Amaral-Zettler, Moacyr Araujo, Clara Arboleda-Baena, Giancarlo Bachi, Daniela Bănaru, Érica C. Becker, Marco Bellacicco, Fabio Benedetti, Chris Bowler, Bruno Buongiorno Nardelli, Lucia Campese, Donata Canu, Ulisse Cardini, Raffaella Casott
Publié dans: Ocean Microbiology, Numéro 1, 2025, ISSN 3005-107X
Éditeur: Springer Science and Business Media LLC
DOI: 10.1186/s44375-025-00006-w

Niche partitioning and plastisphere core microbiomes in the two most plastic polluted zones of the world ocean

Auteurs: Justine Jacquin, Marko Budinich, Samuel Chaffron, Valérie Barbe, Fabien Lombard, Maria-Luiza Pedrotti, Gabriel Gorsky, Alexandra ter Halle, Stéphane Bruzaud, Mikaël Kedzierski, Jean-François Ghiglione
Publié dans: Environmental Science and Pollution Research, Numéro 31, 2024, Page(s) 41118-41136, ISSN 1614-7499
Éditeur: Springer Science and Business Media LLC
DOI: 10.1007/s11356-024-33847-0

The Effect of Currents on Large Surface Gravity Waves Under Cyclonic Conditions in the South/Southeastern Brazil

Auteurs: Gustavo Lauton, Martinho Marta-Almeida, Carlos A. D. Lentini
Publié dans: Journal of Geophysical Research: Oceans, 2023, ISSN 2169-9275
Éditeur: Wiley-Blackwell
DOI: 10.1029/2022jc018472

Untargeted metabolomic insights into plastisphere communities in European rivers

Auteurs: Boris Eyheraguibel, Binta Diémé, Marie Lagrée, Stéphanie Durand, Valérie Barbe, Anne-Leila Meistertzheim, Alexandra ter Halle, Gaétan Burgaud, Jean-François Ghiglione
Publié dans: Environmental Science and Pollution Research, Numéro 32, 2025, Page(s) 10181-10194, ISSN 1614-7499
Éditeur: Springer Science and Business Media LLC
DOI: 10.1007/s11356-024-34214-9

The polar night shift: seasonal dynamics and drivers of Arctic Ocean microbiomes revealed by autonomous sampling

Auteurs: Matthias Wietz, Christina Bienhold, Katja Metfies, Sinhué Torres-Valdés, Wilken-Jon von Appen, Ian Salter, Antje Boetius
Publié dans: ISME Communications, Numéro 1, 2024, ISSN 2730-6151
Éditeur: Oxford University Press (OUP)
DOI: 10.1038/s43705-021-00074-4

CEPHALOPOD, a package to standardize marine habitat‐modelling practices and enhance inter‐comparability across biological observations

Auteurs: Alexandre Schickele, Corentin Clerc, Fabio Benedetti, Daniele De Angelis, Urs Hofmann Elizondo, Matthias Münnich, Jean‐Olivier Irisson, Meike Vogt
Publié dans: Methods in Ecology and Evolution, Numéro 16, 2025, Page(s) 1126-1135, ISSN 2041-210X
Éditeur: John Wiley and Sons Inc.
DOI: 10.1111/2041-210x.70040

Temporal dynamics in zooplankton δ13C and δ15N isoscapes for the North Atlantic Ocean: Decadal cycles, seasonality, and implications for predator ecology

Auteurs: Boris Espinasse, Anthony Sturbois, Sünnje L. Basedow, Pierre Hélaouët, David G. Johns, Jason Newton, Clive N. Trueman
Publié dans: Frontiers in Ecology and Evolution, Numéro 10, 2022, ISSN 2296-701X
Éditeur: Frontiers Media SA
DOI: 10.3389/fevo.2022.986082

The impact of zooplankton calcifiers on the marine carbon cycle

Auteurs: Nielja S. Knecht; Fabio Benedetti; Urs Hofmann Elizondo; Nina Bednaršek; Sonia Chaabane; Catharina de Weerd; Katja T. C. A. Peijnenburg; Ralf Schiebel; Meike Vogt
Publié dans: Global Biogeochemical Cycles, 2023, ISSN 0886-6236
Éditeur: American Geophysical Union
DOI: 10.1029/2022gb007685

Three major mesoplanktonic communities resolved by in situ imaging in the upper 500 m of the global ocean

Auteurs: Thelma Panaïotis, Marcel Babin, Tristan Biard, François Carlotti, Laurent Coppola, Lionel Guidi, Helena Hauss, Lee Karp‐Boss, Rainer Kiko, Fabien Lombard, Andrew M. P. McDonnell, Marc Picheral, Andreas Rogge, Anya M. Waite, Lars Stemmann, Jean‐Olivier Irisson
Publié dans: Global Ecology and Biogeography, Numéro 32, 2023, Page(s) 1991-2005, ISSN 1466-822X
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/geb.13741

Phytoplankton life strategies, phenological shifts and climate change in the North Atlantic Ocean from 1850 to 2100

Auteurs: Loïck Kléparski, Grégory Beaugrand, Martin Edwards, Clare Ostle
Publié dans: Global Change Biology, 2023, ISSN 1365-2486
Éditeur: Wiley-Blackwell
DOI: 10.1111/gcb.16709

Mission Tara Microplastics: a holistic set of protocols and data resources for the field investigation of plastic pollution along the land-sea continuum in Europe

Auteurs: Jean-François Ghiglione, Valérie Barbe, Stéphane Bruzaud, Gaëtan Burgaud, Jérôme Cachot, Boris Eyheraguibel, Franck Lartaud, Wolfgang Ludwig, Anne-Leila Meistertzheim, Ika Paul-Pont, Stéphane Pesant, Alexandra ter Halle, Odon Thiebeauld, null null, J. F. Ghiglione, L. Philip, C. Odobel, C. Pandin, M. Pujo-Pay, P. Conan, N. Luckas, V. Barbe, P. Wincker, S. Bruzaud, M. Kedzierski, M. Palazot,
Publié dans: Environmental Science and Pollution Research, Numéro 32, 2025, Page(s) 10032-10049, ISSN 1614-7499
Éditeur: Springer Science and Business Media LLC
DOI: 10.1007/s11356-023-26883-9

Local drivers of marine heatwaves: A global analysis with an Earth system model

Auteurs: Linus Vogt; Friedrich Burger; Stephen Griffies; Thomas Frölicher
Publié dans: Frontiers in Climate, 2022, ISSN 2624-9553
Éditeur: Frontiers Media S.A
DOI: 10.3389/fclim.2022.847995

Climate-driven variability of the Southern Ocean CO

Auteurs: Mayot, Nicolas;Le Quere, Corinne Corinne;Roedenbeck, Christian;Bernardello, Raffaele;Bopp, Laurent;Djeutchouang, Laique M.;Gehlen, Marion;Gregor, Luke;Gruber, Nicolas;Hauck, Judith;Iida, Yosuke;Ilyina, Tatiana V.;Keeling, Ralph F.;Landschutzer, Peter;Manning, Andrew C.;Patara, Lavinia;Resplandy, Laure;Schwinger, Joerg;Seferian, Roland;Watson, Andrew J.;Wright, Rebecca Mary;Zeng, J.
Publié dans: Biology Letters, 2023, ISSN 1744-9561
Éditeur: The Royal Society

A network-based measure of functional diversity in food webs

Auteurs: Lin Wen-hsien, Lai Shu-mei, Davis Andrew J., Liu Wei-chung and Jordán Ferenc
Publié dans: Biology Letters, 2022, ISSN 1744-9561
Éditeur: The Royal Society
DOI: 10.1098/rsbl.2022.0183

Contribution of genome-scale metabolic modelling to niche theory

Auteurs: Antoine Régimbeau, Marko Budinich, Abdelhalim Larhlimi, Juan José Pierella Karlusich, Olivier Aumont, Laurent Memery, Chris Bowler, Damien Eveillard
Publié dans: Ecology Letters, 2022, Page(s) 1352-1364, ISSN 1461-0248
Éditeur: Wiley-Blackwell
DOI: 10.1111/ele.13954

Climate change drives shifts in straddling fish stocks in the world’s ocean

Auteurs: Juliano Palacios-Abrantes, Bianca S. Santos, Thomas L. Frölicher, Gabriel Reygondeau, U. Sumaila, Colette C. C. Wabnitz, William W. L. Cheung
Publié dans: Science Advances, Numéro 11, 2025, ISSN 2375-2548
Éditeur: American Association for the Advancement of Science (AAAS)
DOI: 10.1126/sciadv.adq5976

Genomic adaptation of giant viruses in polar oceans

Auteurs: Lingjie Meng; Tom O. Delmont; Morgan Gaïa; Eric Pelletier; Antonio Fernàndez-Guerra; Samuel Chaffron; Russell Y. Neches; Junyi Wu; Hiroto Kaneko; Hisashi Endo; Hiroyuki Ogata
Publié dans: Nature Communications, 2023, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1101/2023.02.09.527846

Climate-driven variability of the Southern Ocean CO2 sink

Auteurs: N. Mayot, C. Le Quéré, C. Rödenbeck, R. Bernardello, L. Bopp, L. M. Djeutchouang, M. Gehlen, L. Gregor, N. Gruber, J. Hauck, Y. Iida, T. Ilyina, R. F. Keeling, P. Landschützer, A. C. Manning, L. Patara, L. Resplandy, J. Schwinger, R. Séférian, A. J. Watson, R. M. Wright and J. Zeng
Publié dans: Philosophical transactions. Series A, Mathematical, physical, and engineering sciences, 2023, ISSN 1364-503X
Éditeur: Royal Society of London
DOI: 10.1098/rsta.2022.0055

A dataset of Oceanographic and biogeochemical anomalies in the Caribbean Sea

Auteurs: CASALS, R.; VARONA, H. L.; CALZADA, A. E.; LENTINI, C. A. D.; NORIEGA, C.; BORGES, D. M.; LIRA, S. M. A.; SANTANA, C. S. de; ARAUJO, M.; SCHWAMBORN, R.; RODRIGUEZ, A.
Publié dans: Latin America Data in Science, 2022, ISSN 2763-9290
Éditeur: Alex Bager
DOI: 10.53805/lads.v2i1.50

Uncertainties of particulate organic carbon concentrations in the mesopelagic zone of the Atlantic ocean

Auteurs: Paul Strubinger Sandoval; Giorgio Dall'Olmo; Keith Haines; Rafael Rasse; Jelizaveta Ross; Jelizaveta Ross
Publié dans: Open Research Europe, 2021, ISSN 2732-5121
Éditeur: F1000 Research Limited
DOI: 10.12688/openreseurope.13395.1

A Conceptual Approach to Partitioning a Vertical Profile of Phytoplankton Biomass Into Contributions From Two Communities

Auteurs: Robert J. W. Brewin, Giorgio Dall’Olmo, John Gittings, Xuerong Sun, Priscila K. Lange, Dionysios E. Raitsos, Heather A. Bouman, Ibrahim Hoteit, Jim Aiken, Shubha Sathyendranath
Publié dans: Journal of Geophysical Research: Oceans, Numéro 127, 2024, ISSN 2169-9275
Éditeur: American Geophysical Union (AGU)
DOI: 10.1029/2021jc018195

The European Nucleotide Archive in 2020.

Auteurs: Peter W. Harrison; Alisha Ahamed; Raheela Aslam; Blaise T. F. Alako; Josephine Burgin; Nicola Buso; Mélanie Courtot; Jun Fan; Dipayan Gupta; Muhammad Haseeb; Sam Holt; Talal Ibrahim; Eugene Ivanov; Suran Jayathilaka; Vishnukumar Balavenkataraman Kadhirvelu; Manish Kumar; Rodrigo Lopez; Simon Kay; Rasko Leinonen; Xin Liu; Colman O’Cathail; Amir Pakseresht; Youngmi Park; Stephane Pesant; Nadim Ra
Publié dans: Nucleic Acids Research, 2021, ISSN 1362-4962
Éditeur: Oxford University Press
DOI: 10.1093/nar/gkaa1028

The founding charter of the Omic Biodiversity Observation Network (Omic BON)

Auteurs: Raïssa Meyer, Neil Davies, Kathleen J Pitz, Chris Meyer, Robyn Samuel, Jane Anderson, Ward Appeltans, Katharine Barker, Francisco P Chavez, J Emmett Duffy, Kelly D Goodwin, Maui Hudson, Margaret E Hunter, Johannes Karstensen, Christine M Laney, Margaret Leinen, Paula Mabee, James A Macklin, Frank Muller-Karger, Nicolas Pade, Jay Pearlman, Lori Phillips, Pieter Provoost, Ioulia Santi, Dmitry Schig
Publié dans: GigaScience, 2023, ISSN 2047-217X
Éditeur: Oxford University Press
DOI: 10.1093/gigascience/giad068

At what scale should we assess the health of pelagic habitats? Trade-offs between small-scale manageable pressures and the need for regional upscaling

Auteurs: C.A. Graves, M. Best, A. Atkinson, B. Bear, E. Bresnan, M. Holland, D.G. Johns, M. Machairopoulou, A. McQuatters-Gollop, A. Mellor, C. Ostle, K. Paxman, S. Pitois, P. Tett, M. Devlin
Publié dans: Ecological indicators, 2023, ISSN 1470-160X
Éditeur: Elsevier BV
DOI: 10.1016/j.ecolind.2023.110571

Effects of Mesozooplankton Growth and Reproduction on Plankton and Organic Carbon Dynamics in a Marine Biogeochemical Model

Auteurs: Corentin Clerc, Laurent Bopp, Fabio Benedetti, Nielja Knecht, Meike Vogt, Olivier Aumont
Publié dans: Global Biogeochemical Cycles, Numéro 38, 2024, ISSN 0886-6236
Éditeur: American Geophysical Union
DOI: 10.1029/2024gb008153

Microbial ecology of the Southern Ocean

Auteurs: Diego J Castillo; Choaro D Dithugoe; Oliver K Bezuidt; Thulani P Makhalanyane
Publié dans: FEMS Microbiology Ecology, 2022, ISSN 1574-6941
Éditeur: Oxford university Press
DOI: 10.1093/femsec/fiac123

Mechanisms of spacer acquisition by sequential assembly of the adaptation module in <i>Synechocystis</i>

Auteurs: Chengyong Wu, Dongmei Tang, Jie Cheng, Daojun Hu, Zejing Yang, Xue Ma, Haihuai He, Shaohua Yao, Tian-Min Fu, Yamei Yu, Qiang Chen
Publié dans: Nucleic Acids Research, Numéro 49, 2021, Page(s) 2973-2984, ISSN 0305-1048
Éditeur: Oxford University Press
DOI: 10.1093/nar/gkab105

Combining Environmental <scp>DNA</scp> Data With Oceanography, Life History and Ecology for Detecting Climate‐Induced Range Shifts

Auteurs: Karolina M. Zarzyczny, Julie C. Robidart, Phillip B. Fenberg, Alexander Forryan, Michael E. Hellberg, Suzanne T. Williams, David A. Paz‐García, Alberto C. Naveira Garabato, Marc Rius
Publié dans: Diversity and Distributions, Numéro 31, 2026, ISSN 1366-9516
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/ddi.70064

Ecological associations distribution modelling of marine plankton at a global scale

Auteurs: Marinna Gaudin, Damien Eveillard, Samuel Chaffron
Publié dans: Philosophical Transactions of the Royal Society B: Biological Sciences, Numéro 379, 2025, ISSN 0962-8436
Éditeur: Royal Society of London
DOI: 10.1098/rstb.2023.0169

Non-peer reviewed articles (11)

Virus-Host Interactions Reveal Potential Roles Towards Phosphorus Cycling in South Atlantic Ocean Euphotic Zones

Auteurs: Percy Mutseka Lunga, Oliver K.I Bezuidt, Miho Hirai, Yoshihiro Takaki, Taichi Yokokawa, Takuro Nunoura, J. Colin Murrell, Thulani Makhalanyane
Publié dans: Reasearch Square, 2022, ISSN 0000-0000
Éditeur: NA
DOI: 10.21203/rs.3.rs-1021375/v1

Ubiquity of inverted 'gelatinous' ecosystem pyramids in the global ocean

Auteurs: Lombard Fabien;Guidi Lionel;Manoela C. Brandao;Coelho Luis Pedro;Colin Sebastien;Dolan John Richard;Elineau Amanda;Josep M Gasol;Grondin Pierre Luc;Henry Nicolas;Federico M Ibarbalz;Jalabert Laëtitia;Loreau Michel;Martini Severinne;Meriguet Zoe;Picheral Marc;Juan Jose Pierella Karlusich;Rainer Pepperkok;Romagnan Jean-Baptiste;Zinger Lucie;Stemmann Lars;Silvia G Acinas;Karp-Boss Lee;Boss Emmanue
Publié dans: BioRXiv, 2024, ISSN 0000-0000
Éditeur: NA

Predicting The Sign of Trophic Effects: Individual-Based Simulation Versus Loop Analysis

Auteurs: Virág Adrienn Fábián, Ferenc Jordán
Publié dans: Reasearch Square, 2022, ISSN 0000-0000
Éditeur: NA
DOI: 10.21203/rs.3.rs-524228/v1

Genomics-based quantitative biogeography of marine plankton

Auteurs: Margaux Crédeville, Roy El Hourany, Swan L. S. Sow, Julie Poulain, Manon Depaty, Eric Pelletier, Zoé Mériguet, Marie-Fanny Racault, null null, Aude Perdereau, Laurie Bertrand, Frédérick Gavory, Priscillia Gourvil, Céline Orvain, Morgane Ratin, Laurence Garczarek, Tom O Delmont, Adrien Thurotte, Corinne Le Quéré, Juan J Pierella Karlusich, Chris Bowler, Samuel Chaffron, Patrick Wincker, Fab
Publié dans: BioRXiv, 2026, ISSN 0000-0000
Éditeur: NA
DOI: 10.1101/2025.10.25.684415

SATELLITE OCEANOGRAPHY: HARNESSING THE TECHNOLOGICAL REVOLUTION

Auteurs: Carlos Alessandro Domingos Lentini, Luís Felipe F. de Mendonça
Publié dans: Arquivos de Ciências do Mar, Numéro 55, 2025, Page(s) 163-179, ISSN 2526-7639
Éditeur: Universidade Federal do Ceará (UFC)
DOI: 10.32360/acmar.v55iespecial.78516

Ubiquity of inverted ’gelatinous’ ecosystem pyramids in the global ocean

Auteurs: Lombard Fabien, Guidi Lionel, Manoela C. Brandão, Coelho Luis Pedro, Colin Sébastien, Dolan John Richard, Elineau Amanda, Josep M Gasol, Grondin Pierre Luc, Henry Nicolas, Federico M Ibarbalz, Jalabert Laëtitia, Loreau Michel, Martini Séverinne, Mériguet Zoé, Picheral Marc, Juan José Pierella Karlusich, Rainer Pepperkok, Romagnan Jean-Baptiste, Zinger Lucie, null null, Stemmann Lars, Silvia
Publié dans: BioRXiv, 2026, ISSN 0000-0000
Éditeur: NA
DOI: 10.1101/2024.02.09.579612

Combined in vivo and in situ genome-resolved metagenomics reveals novel symbiotic nitrogen fixing interactions between non-cyanobacterial diazotrophs and microalgae

Auteurs: UDITA CHANDOLA, CAMILLE TROTTIER, MARINNA GAUDIN, ERIC MANIRAKIZA, SAMUEL MENICOT, ISABELLE LOUVET, THOMAS LACOUR, TIMOTHEE CHAUMIER, ATSUKO TANAKA, Samuel Chaffron, Leila Tirichine
Publié dans: Reasearch Square, 2024, ISSN 0000-0000
Éditeur: NA
DOI: 10.21203/rs.3.rs-2361194/v1

Editorial: Technological advances for measuring planktonic components of the pelagic ecosystem: An integrated approach to data collection and analysis

Auteurs: Sophie G. Pitois, Elaine S. Fileman, Mark C. Benfield, Peter H. Wiebe, Fabien Lombard
Publié dans: Frontiers in Marine Science, 2023, ISSN 2296-7745
Éditeur: Frontiers Media S.A.
DOI: 10.3389/fmars.2023.1100998

Restructuring of genomic provinces of surface ocean plankton under climate change

Auteurs: Paul Frémont, Marion Gehlen, Mathieu Vrac, Jade Leconte, Tom O. Delmont, Patrick Wincker, Daniele Iudicone, Olivier Jaillon
Publié dans: BioRXiv, 2026, ISSN 0000-0000
Éditeur: NA
DOI: 10.1101/2020.10.20.347237

Trends in Marine Plankton Biodiversity over the 21st Century under Different Climate Change Scenarios

Auteurs: Li, Xinhang
Publié dans: ETHZ, 2023, ISSN 0000-0000
Éditeur: NA

Patterns of mesozooplankton community composition and vertical fluxes in the global ocean

Auteurs: Yawouvi Dodji Soviadan, View ORCID ProfileFabio Benedetti, View ORCID ProfileManoela C. Brandão, View ORCID ProfileSakina-Dorothée Ayata, View ORCID ProfileJean-Olivier Irisson, View ORCID ProfileJean Louis Jamet, Rainer Kiko, Fabien Lombard, Kissao Gnandi, Lars Stemmann
Publié dans: Progress in Oceanography, 2022, ISSN 0079-6611
Éditeur: Pergamon Press Ltd.
DOI: 10.1016/j.pocean.2021.102717

Thesis and dissertations (5)

Quantification de l'abondance du plancton marin à l'échelle génomique

Auteurs: null null, Margaux Crédeville
Publié dans: 2026, ISSN 0000-0000
Éditeur: Agence Bibliographique de l'Enseignement Supérieur
DOI: 10.70675/bf3a1dc2zbd6dz49edz955ez270050b15324

Trends in Marine Plankton Biodiversity over the 21st Century under Different Climate Change Scenarios

Auteurs: Li, Xinhang
Publié dans: 2023
Éditeur: ETH Zurich
DOI: 10.3929/ethz-b-000652200

Ecological processes structuring the ocean microbiome across space and time

Auteurs: Junger, Pedro C.
Publié dans: 2023
Éditeur: Universidade Federal de São Carlos CSIC - Instituto de Ciencias del Mar (ICM)

The potential of machine learning algorithms for mapping microplastic concentrations in the global ocean

Auteurs: Poli Giacomo
Publié dans: 2023
Éditeur: Zenodo
DOI: 10.5281/zenodo.10245292

Comparing models and observations of the surface accumulation zone of floating plastic in the North Atlantic subtropical gyre

Auteurs: Schmiz, Sophie
Publié dans: 2021
Éditeur: Zenodo
DOI: 10.5281/zenodo.5338790

Other (4)

Nitrogen fixation rates increase with diazotroph richness in the global ocean

Auteurs: Dominic Eriksson, Nicolas Gruber, Fabio Benedetti, Damiano Righetti, Lucas Paoli, Guillem Salazar, Shinichi Sunagawa, Meike Vogt
Publié dans: ecoevorxiv, 2023
Éditeur: ecoevorxiv
DOI: 10.32942/x2z323

Planktoscope protocol for plankton imaging V.2

Auteurs: Lombard Fabien
Publié dans: 2023, ISSN 2473-1838
Éditeur: Springer Nature
DOI: 10.17504/protocols.io.bp2l6bq3zgqe/v2

Linking satellites to genes with machine learning to estimate major phytoplankton groups from space

Auteurs: Roy El Hourany, Juan Pierella Karlusich, Lucie Zinger, Hubert Loisel, Marina Levy, and Chris Bowler
Publié dans: EGUsphere, 2022
Éditeur: Copernicus
DOI: 10.5194/egusphere-2022-1421

Mapping global marine biodiversity under sparse data conditions

Auteurs: Damiano Righetti, Meike Vogt, Nicolas Gruber, Niklaus E. Zimmermann
Publié dans: bioRxiv, 2023
Éditeur: bioRxiv
DOI: 10.1101/2023.02.28.530497

Conference proceedings (1)

The Marine Biodiversity Observation Network Plankton Workshops: Plankton Ecosystem Function, Biodiversity, and Forecasting—Research Requirements and Applications

Auteurs: Grigoratou, Maria; Montes, Enrique; Richardson, Anthony J.; Everett, Jason D.; Acevedo‐Trejos, Esteban; Anderson, Clarissa; Chen, Bingzhang; Guy-Haim, Tamar; Hinners, Jana; Lindemann, Christian; Garcia, Tatiane Martins; Möller, Klas O.; Monteiro, Fanny M.; Neeley, Aimee R.; O'Brien, Todd D.; Palacz, Artur P.; Poulton, Alex J.; Prowe, A.E. Friederike; Rodríguez‐Santiago, Áurea E.; Rousseaux,
Publié dans: Limnology and Oceanography Bulletin, 2022, ISSN 1539-6088
Éditeur: Wiley-Blackwell
DOI: 10.1002/lob.10479

Book chapters (1)

Towards a Global Perspective of the Marine Microbiome

Auteurs: Silvia G. Acinas; Marta Sebastián; Isabel Ferrera
Publié dans: The Marine Microbiome, 2022
Éditeur: Springer Cham
DOI: 10.1007/978-3-030-90383-1_8