Publications Peer reviewed articles (34) Bulk-surface coupling identifies the mechanistic connection between Min-protein patterns in vivo and in vitro Author(s): F. Brauns, G. Pawlik, J. Halatek, J. Kerssemakers, E. Frey, C. Dekker Published in: Nature Comm. 12, 2021, ISSN 2041-1723 Publisher: Nature Publishing Group DOI: 10.1038/s41467-021-23412-5 Palladium Zero-Mode Waveguides for Optical Single Molecule Detection with Nanopores Author(s): Klughammer, Nils; Dekker, Cees Published in: Nanotechnology 32, Issue 2, 2021, ISSN 0957-4484 Publisher: Institute of Physics Publishing DOI: 10.48550/arxiv.2010.00276 High-resolution imaging of bacterial spatial organization with Vertical Cell Imaging by Nanostructured Immobilisation Author(s): K.D. Whitley, S. Middlemiss, C. Jukes, C. Dekker, S. Holden Published in: Nature Protocols 17, 2022, ISSN 1754-2189 Publisher: Nature Publishing Group DOI: 10.1038/s41596-021-00668-1 Studying Phase Separation in Confinement Author(s): S. Deshpande, C. Dekker Published in: Curr. Opin. Colloid Interface Sci. 52, 2021, ISSN 1359-0294 Publisher: Pergamon Press DOI: 10.1016/j.cocis.2021.101419 Quantitative analysis of surface wave patterns of Min proteins Author(s): S. Meindlhumer, J. Kerssemakers, C. Dekker Published in: Frontiers in Physics, 2022, ISSN 2296-424X Publisher: Frontiers Media S.A. DOI: 10.3389/fphy.2022.930811 Reconstitution of Ultrawide DNA Origami Pores in Liposomes for Transmembrane Transport of Macromolecules. Author(s): Alessio Fragasso; Nicola De Franceschi; P. Stoemmer; E. O. Van der Sluis; Hendrik Dietz; Cees Dekker Published in: ACS Nano (online), 15(8), Issue 5, 2021, ISSN 1936-0851 Publisher: American Chemical Society DOI: 10.1021/acsnano.1c01669 Bridging scales in a multiscale pattern-forming system Author(s): L. Würthner, F. Brauns, G. Pawlik, J. Halatek, J. Kerssemakers, C. Dekker, E. Frey Published in: PNAS 119, 2022, ISSN 0027-8424 Publisher: National Academy of Sciences DOI: 10.1073/pnas.2206888119 SMC complexes can traverse physical roadblocks bigger than their ring size Author(s): B. Pradhan, R. Barth, E. Kim, I.F. Davidson, B. Bauer, T. van Laar, W. Yang, J.-K. Ryu, J. van der Torre, J.-M. Peters, C. Dekker Published in: Cell Reports 41, 2022, ISSN 2211-1247 Publisher: Cell Press DOI: 10.1016/j.celrep.2022.111491 DNA sequence-directed cooperation between nucleoid-associated proteins Author(s): A. Japaridze, W. Yang, C. Dekker, W. Nasser, G. Muskhelishvili Published in: iScience 24, 2021, ISSN 1095-9203 Publisher: American Association for the Advancement of Science DOI: 10.1016/j.isci.2021.102408 Comparing current noise in biological and solid-state nanopores Author(s): A. Fragasso, S. Schmid, C. Dekker Published in: ACS Nano 14, 2020, ISSN 1936-0851 Publisher: American Chemical Society DOI: 10.1021/acsnano.9b09353 Nanopores – a Versatile Tool to Study Protein Dynamics Author(s): S. Schmid, C. Dekker Published in: Essays in Biochemistry EBC20200020, 2020, ISSN 0006-2960 Publisher: American Chemical Society DOI: 10.1042/ebc20200020 FtsZ treadmilling is essential for Z-ring condensation and septal constriction initiation in bacterial cell division Author(s): K.D. Whitley, C. Jukes, N. Tregidgo, E. Karinou, P. Almada, R. Henriques, C. Dekker, S. Holden Published in: Nature Comm. 12, 2021, ISSN 2041-1723 Publisher: Nature Publishing Group DOI: 10.1038/s41467-021-22526-0 Condensin-driven loop extrusion on supercoiled DNA Author(s): E. Kim, A. Martin Gonzalez, B. Pradhan, J. van der Torre, C. Dekker Published in: Nature Struct. Molec. Biol. 29, 2022, ISSN 1545-9993 Publisher: Nature Publishing Group DOI: 10.1038/s41594-022-00802-x Multiple re-reading of single proteins at single-amino-acid resolution using nanopores Author(s): H. Brinkerhoff, A.S.W. Kang, J. Liu, A. Aksimentiev, C. Dekker Published in: Science 374, 2021, ISSN 0036-8075 Publisher: American Association for the Advancement of Science DOI: 10.1126/science.abl4381 Transport receptor occupancy in Nuclear Pore Complex mimics Author(s): A. Fragasso, H.W. de Vries, J. Andersson, E.O. van der Sluis, E. van der Giessen, P.R. Onck, C. Dekker Published in: Nano Research, 2022, ISSN 1998-0124 Publisher: Tsinghua Univ Press DOI: 10.1007/s12274-022-4647-1 CENP-B-mediated DNA loops regulate activity and stability of human centromeres Author(s): F. Chardon, A. Japaridze, H. Witt, L. Velikovsky, C. Chakraborty, T. Wihelm, M. Dumont, W. Yang, C. Kikuti, S. Gangnard, G. Wuite, C. Dekker, D. Fachinetti Published in: Molec. Cell 82, 2022, ISSN 1097-2765 Publisher: Cell Press DOI: 10.1016/j.molcel.2022.02.032 Towards a synthetic cell cycle Author(s): L. Olivi, M. Berger, R.N.P. Creyghton, N. De Franceschi, C. Dekker, B.M. Mulder, N.J. Claassens, P.R. ten Wolde, J. van der Oost Published in: Nature Comm.12, 2021, ISSN 2041-1723 Publisher: Nature Publishing Group DOI: 10.1038/s41467-021-24772-8 Probing nanomotion of single bacteria with graphene drums Author(s): Irek Rosłoń; Peter Steeneken; Aleksandre Japaridze; Cees Dekker; Farbod Alijani Published in: Nature Nanotechnology 17, Issue 9, 2022, ISSN 1748-3387 Publisher: Nature Publishing Group DOI: 10.1101/2021.09.21.461186 pH-controlled coacervate-membrane interactions within liposomes Author(s): M.G.F. Last, S. Deshpande, C.Dekker Published in: ACS Nano 14, 2020, ISSN 1936-0851 Publisher: American Chemical Society DOI: 10.1021/acsnano.9b10167 ParB proteins can bypass DNA-bound roadblocks via dimer-dimer recruitment Author(s): M. Tišma, M. Panoukidou, H. Antar, Y.-M. Soh, R. Barth, B. Pradhan, J. van der Torre, D. Michieletto, S. Gruber, C. Dekker Published in: Science Advances 8, 2022, ISSN 0036-8075 Publisher: American Association for the Advancement of Science DOI: 10.1126/sciadv.abn3299 Nanopore electro-osmotic trap for the label-free study of single proteins and their conformations Author(s): S. Schmid, P. Stömmer, H. Dietz, C. Dekker Published in: Nature Nanotechn. 16, 2021, ISSN 1748-3387 Publisher: Nature Publishing Group DOI: 10.1038/s41565-021-00958-5 Mechanisms for Chromosome Segregation in Bacteria Author(s): C. Gogou, A. Japaridze, C. Dekker Published in: Frontiers Microbiol. 12, 2021, ISSN 1664-302X Publisher: Frontiers Media DOI: 10.3389/fmicb.2021.685687 A designer FG-Nup that reconstitutes the selective transport barrier of the Nuclear Pore Complex Author(s): A. Fragasso, H.W. de Vries, E.O. van der Sluis, E. van der Giessen, P.R. Onck, C. Dekker Published in: Nature Comm. 12, 2021, ISSN 2041-1723 Publisher: Nature Publishing Group DOI: 10.1038/s41467-021-22293-y Sustained unidirectional rotation of a self-organized DNA rotor on a nanopore Author(s): X. Shi, A.-K. Pumm, J. Isensee, W. Zhao, D. Verschueren, A. Martin-Gonzalez, R. Golestanian, H. Dietz, C. Dekker Published in: Nature Physics, 2022, ISSN 1745-2473 Publisher: Nature Publishing Group DOI: 10.1038/s41567-022-01683-z DNA-loop extruding condensin complexes can traverse one another Author(s): E. Kim, J. Kerssemakers, I.A. Shaltiel, C.H. Haering, C. Dekker Published in: Nature 579, 2020, ISSN 0028-0836 Publisher: Nature Publishing Group DOI: 10.1038/s41586-020-2067-5 CRISPR-dCas9 based DNA detection scheme for diagnostics in resource limited settings Author(s): M. Bengtson, M. Bharadwaj, O. Franch, J. van der Torre, V. Meerdink, H. Schallig, C. Dekker Published in: Nanoscale 14, 2022, ISSN 2040-3364 Publisher: Royal Society of Chemistry DOI: 10.1039/d1nr06557b Simultaneous orientation and 3D localization microscopy with a Vortex point spread function Author(s): C.N. Hulleman, R.Ø. Thorsen, E. Kim, C. Dekker, S. Stallinga, B. Rieger Published in: Nature Comm. 12, 2021, ISSN 2041-1723 Publisher: Nature Publishing Group DOI: 10.1038/s41467-021-26228-5 Bridging-induced phase separation induced by cohesin SMC protein complexes Author(s): J.‐K. Ryu, C. Bouchoux, H.W. Liu, E. Kim, M. Minamino, R. de Groot, A.J. Katan, A. Bonato, D. Marenduzzo, D. Michieletto, F. Uhlmann, C. Dekker Published in: Science Advances 7, 2021, ISSN 2375-2548 Publisher: American Association for the Advancement of Science DOI: 10.1126/sciadv.abe5905 Condensin extrudes DNA loops in steps up to hundreds of base pairs that are generated by ATP binding events Author(s): J.-K. Ryu, S.-H. Rah, R. Janissen, J.W.J. Kerssemakers, C. Dekker Published in: Nucl. Acid Res. 50, 2022, ISSN 0305-1048 Publisher: Oxford University Press DOI: 10.1093/nar/gkab1268 Genome-in-a-Box: Building a Chromosome from the Bottom Up. Author(s): Anthony Birnie; Cees Dekker Published in: VOLUME=15;ISSUE=1;ISSN=1936-0851;TITLE=ACS Nano (online), Issue 3, 2020, ISSN 1936-0851 Publisher: American Chemical Society DOI: 10.1021/acsnano.0c07397 Direct observation of independently moving replisomes in Escherichia coli Author(s): A. Japaridze, C. Gogou, J. W. J. Kerssemakers, H. M. Nguyen, C. Dekker Published in: Nature Comm. 11, 2020, ISSN 2041-1723 Publisher: Nature Publishing Group DOI: 10.1101/733956 The archaeal division protein CdvB1 assembles into polymers that are depolymerized by CdvC Author(s): A. Blanch Jover, N. De Franceschi, D. Fenel, W. Weissenhorn, C. Dekker Published in: FEBS Lett. 596, 2022, ISSN 0014-5793 Publisher: Elsevier BV DOI: 10.1002/1873-3468.14324 Optimized cDICE for efficient reconstitution of biological systems in giant unilamellar vesicles Author(s): L. Van de Cauter, F. Fanalista, L. van Buren, N. De Franceschi, E. Godino, S. Bouw, C. Danelon, C. Dekker, G.H. Koenderink, K.A. Ganzinger Published in: ACS Synth. Biol. 10, 2021, ISSN 2161-5063 Publisher: American Chemical Society DOI: 10.1021/acssynbio.1c00068 The condensin holocomplex cycles dynamically between open and collapsed states Author(s): J.-K Ryu, A.J. Katan, E.O. van der Sluis, T. Wisse, R. de Groot, C. Haering, C. Dekker Published in: Nature Struct. Molec. Biol. 27, 2020, ISSN 1545-9993 Publisher: Nature Publishing Group DOI: 10.1038/s41594-020-0508-3 Monographic books (1) Single-molecule ionic and optical sensing with nanoapertures Author(s): W. Yang, C. Dekker Published in: Book chapter in ' Single Molecule Nanosensors and Nanosystems' (Eds. W. Bowen, R. Gordon, F. Vollmer; Springer book series Nanostructure Science and Technology), 2021, Page(s) 367-387 Publisher: Springer DOI: 10.1007/978-3-030-90339-8_12 Searching for OpenAIRE data... There was an error trying to search data from OpenAIRE No results available
