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Metatranscriptomics to discover root microbiome functions activated during recognition of stressed and non-stressed plants (MetaFun)

Project description

Understanding who helps plants respond to environmental stress and how

Stress is not good for anyone, plants included, and much as the human microbiome is important in health and disease, so is the plant microbiome. When subjected to environmental stress, plants recruit help from certain members of their microbiome family to recover. Given the increasing incidence of severe weather events and overall climate change, understanding how plant microbiota help their host to survive environmental threats will be important to ensuring crop performance in the future and could also aid in enhancing it now. The EU-funded MetaFun project is investigating microbiota activities as well as microbe–microbe interactions in the root that are activated under various conditions. Insight will be important for the present and future of agricultural crop performance.

Objective

Plants benefit from their microbiome for specific functions such as nutrient uptake, defense and growth. When exposed to environmental stress conditions, plants are able to recruit specific helper microbiota to aid in the recovery from the stress. Understanding mechanisms underlying the interaction between plants and the myriad of microorganisms living in association with them is fundamental to fully harness the genomic potential of these microbes to improve crop agricultural performance. With a metatranscriptomics approach, MetaFun aims at investigating:
1) the microbiome functions involved in chemical communication with the host plant;
2) microbiome functions that become activated in response to recognition of a plant in need and act in co-operation within a community to help the plant to adapt to environmental stress.
The innovative approach of MetaFun is based on the identification of microbial activities that become activated in response to specific biotic/abiotic stresses using a metagenomics and metatranscriptomics approach. Moreover, by combining a powerful experimental design, high resolution RNA-sequencing and advanced computational tools, MetaFun aims to decipher microbe-microbe interactions within the plant-associated microbiomes. The implementation of the MetaFun research project, combined with its training program carried out in an excellent scientific environment, represent a unique opportunity to restart the career of the experienced researcher and become an independent scientist.

Keywords

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Programme(s)

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Topic(s)

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Funding Scheme

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MSCA-IF - Marie Skłodowska-Curie Individual Fellowships (IF)

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Call for proposal

Procedure for inviting applicants to submit project proposals, with the aim of receiving EU funding.

(opens in new window) H2020-MSCA-IF-2019

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Coordinator

UNIVERSITEIT UTRECHT
Net EU contribution

Net EU financial contribution. The sum of money that the participant receives, deducted by the EU contribution to its linked third party. It considers the distribution of the EU financial contribution between direct beneficiaries of the project and other types of participants, like third-party participants.

€ 263 358,72
Address
HEIDELBERGLAAN 8
3584 CS Utrecht
Netherlands

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Activity type
Higher or Secondary Education Establishments
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Total cost

The total costs incurred by this organisation to participate in the project, including direct and indirect costs. This amount is a subset of the overall project budget.

€ 263 358,72
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