Living systems are fundamentally dependent on the ability of proteins to respond to external stimuli. This response is characterized by time dependent changes in structure that occur on multiple time scales, from subpicosecond to seconds. These signal-transduction events are far from being fully understood in all photoreceptor classes. The aim of the project is to measure the real-time structural evolution during photoreceptor-mediated signal transduction, a fundamental cellular process that enables diverse organisms to adapt to changing environmental light conditions and regulate important processes including vision, circadian rhythms and photomovement. Using state-of-the-art time-resolved structural biology techniques, we have monitored the dynamic behaviour of a blue-light photoreceptor. The acquired knowledge may help in the engineering of photoreceptors that will enhance the optogenetics toolbox. It should be mentioned that optogenetics have a great potential in contributing to improved treatments for many diseases (e.g. Alzheimer, Parkinson’s, stroke) and therefore research in that direction may have in the long term a great impact in the society.