Modes of genome evolution during major metazoan transitions

Project Information

METASCALE

Grant agreement ID: 945026

DOI 10.3030/945026

EC signature date 15 October 2020

Start date 1 July 2021

End date 30 June 2026

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost € 1 483 477,00

EU contribution € 1 483 477,00

Coordinated by

UNIVERSITAT WIEN
Austria

Publications

Peer reviewed articles (9)

Gene modelling and annotation for the Hawaiian bobtail squid, Euprymna scolopes

Author(s): Rogers, T. F., Yalçın, G., Briseno, J., Vijayan, N., Nyholm, S. V. & Simakov, O.
Published in: Scientific Data, 2024, ISSN 2052-4463
Publisher: 2052-4463
DOI: 10.1038/s41597-023-02903-8

Robust 3D modelling reveals spatiosyntenic properties of animal genomes

Author(s): Clarence T, Robert NSM, Sarigoel F, Fu X, Bates P, Simakov O
Published in: iScience, 2023, ISSN 2589-0042
Publisher: Cell Press
DOI: 10.1016/j.isci.2023.106136

Chromosome-level genome of the three-spot damselfish, <i>Dascyllus trimaculatus</i>

Author(s): May B. Roberts; Darrin T. Schultz; Remy Gatins; Merly Escalona; Giacomo Bernardi
Published in: G3: Genes, Genomes, Genetics, vol 13, iss 4, Issue 4, 2022, ISSN 2160-1836
Publisher: Genetics Society of America
DOI: 10.1101/2022.08.16.504202

Deeply conserved synteny and the evolution of metazoan chromosomes

Author(s): Simakov O, Bredeson J, Berkoff K, Marletaz F, Mitros T, Schultz DT, O'Connell BL, Dear P, Martinez DE, Steele RE, Green RE, David CN, Rokhsar DS.
Published in: Science Advances, 2022, ISSN 2375-2548
Publisher: American Association for the Advancement of Science
DOI: 10.1126/sciadv.abi5884

A chromosome-level reference genome for the common octopus, Octopus vulgaris (Cuvier, 1797)

Author(s): Destanović, D., Schultz, D. T., Styfhals, R., Cruz, F., Gómez-Garrido, J., Gut, M., Gut, I., Fiorito, G., Simakov, O., Alioto, T. S., Ponte, G., Seuntjens, E.
Published in: G3, 2023, ISSN 2160-1836
Publisher: Genetics Society of America
DOI: 10.1093/g3journal/jkad220

Ancient gene linkages support ctenophores as sister to other animals

Author(s): Darrin T Schultz, Steven H D Haddock, Jessen V Bredeson, Richard E Green, Oleg Simakov, Daniel S Rokhsar
Published in: Nature, 2023, ISSN 1476-4687
Publisher: Nature
DOI: 10.1038/s41586-023-05936-6

Emergence of novel genomic regulatory regions associated with light-organ development in the bobtail squid

Author(s): Lisa Rouressol; John Briseno; Nidhi Vijayan; Grischa Y. Chen; Elena A. Ritschard; Gustavo Sanchez; Spencer V. Nyholm; Margaret J. McFall-Ngai; Oleg Simakov
Published in: iScience, Issue 4, 2023, ISSN 2589-0042
Publisher: Cell Press Elsevier Inc.
DOI: 10.1016/j.isci.2023.107091

Emerging questions on the mechanisms and dynamics of 3D genome evolution in spiralians

Author(s): Rogers, T. F., Simakov, O.
Published in: Briefungs in Functional Genomics, 2023, ISSN 2041-2649
Publisher: Oxford University Press
DOI: 10.1093/bfgp/elad043

The complete mitochondrial genome of <i>Dascyllus trimaculatus</i> (Rüppell, 1829)

Author(s): Juliana Limón; May B. Roberts; Darrin T. Schultz; Giacomo Bernardi
Published in: Mitochondrial DNA Part B, Issue 4, 2023, ISSN 2380-2359
Publisher: Taylor and Francis Online
DOI: 10.1080/23802359.2022.2161838